Showing: qcreset
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84
votes
2
answers
23k
views
45 follow
2
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Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.8 years ago by Istvan Albert ♦♦ 73k • updated 2.6 years ago by caelyn520131410
67
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0
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6.7k
views
65 follow
0
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18
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2
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3.1k
views
8 follow
2
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24
votes
3
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8.9k
views
24 follow
3
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Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.1 years ago by Christian2.5k • updated 13 months ago by Michael Dondrup42k
24
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1
answer
5.4k
views
14 follow
1
answer
9
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0
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5.4k
views
0
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22
votes
4
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10.0k
views
11 follow
4
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FastQ quality check : what can we correct ?
fastq qc written 3.0 years ago by Rad780
9
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0
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1.1k
views
0
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12
votes
1
answer
1.6k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 5.3 years ago by Ido Tamir4.7k • updated 5.3 years ago by Obi Griffith15k
8
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2
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5.2k
views
2
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13
votes
2
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271
views
7 follow
2
answers
12
votes
4
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5.3k
views
6 follow
4
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Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.9 years ago by dataminer8950 • updated 4.9 years ago by Madelaine Gogol4.8k
8
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1
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1.4k
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1
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How To Handle Ns In The Middle Of Reads
qc fastqc written 3.5 years ago by kautilya340 • updated 2.3 years ago by Gabriel R.1.9k
6
votes
1
answer
878
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 5.4 years ago by Angel190 • updated 5.3 years ago by Pascal1.4k
3
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0
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1.3k
views
0
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7
votes
2
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4.5k
views
5 follow
2
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Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.3 years ago by Johan760 • updated 2.6 years ago by Kamil1.5k
20
votes
3
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4.1k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.2 years ago by venkateshr89650 • updated 4.0 years ago by rob234king530
7
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1
answer
2.3k
views
1
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Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 3.1 years ago by DoubleD130 • updated 3.1 years ago by Cyriac Kandoth4.6k
3
votes
1
answer
1.0k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 5.7 years ago by Thomas700 • updated 5.5 years ago by Matt Shirley7.5k
3
votes
1
answer
973
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.6 years ago by Holly30 • updated 5.5 years ago by Chris Penkett470
3
votes
1
answer
2.5k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 5.4 years ago by Dan D6.0k • updated 5.4 years ago by Sean Davis23k
3
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1
answer
1.7k
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1
answer
3
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2
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2.5k
views
2
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4
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1
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1.8k
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1
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Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 4.4 years ago by William3.9k • updated 4.3 years ago by Fennan30
9
votes
6
answers
3.4k
views
7 follow
6
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Illumina Mate Pair Read Duplication Level
illumina qc written 4.1 years ago by abc40 • updated 3.8 years ago by Biomonika (Noolean)2.9k
3
votes
1
answer
2.6k
views
1
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Rna-Seq Read Mapping Stats/Metrics
alignment qc rna-seq written 4.0 years ago by pm201350 • updated 4.0 years ago by Mikael Huss4.5k
3
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0
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1.7k
views
0
answers
6
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3
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1.7k
views
3
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LD pruning and other QC before association analysis ?
gwas qc written 15 months ago by Picasa290 • updated 13 months ago by Nick20
2
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0
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490
views
0
answers
3
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2
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5.5k
views
2
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What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.5 years ago by KJ Lim110 • updated 5.5 years ago by Lim0
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