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<prev • 111 results • page 1 of 4 • next >
88
votes
2
answers
24k
views
51 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.6 years ago by Istvan Albert ♦♦ 76k • updated 3.4 years ago by caelyn5201314 • 10
67
votes
0
answers
7.5k
views
65 follow
0
answers
Tutorial: Bioinformatics For Metagenomic Analyses
bioinformatics tutorial taxonomy qc metagenomics written 4.0 years ago by umer.zeeshan.ijaz • 1.7k
19
votes
2
answers
4.7k
views
8 follow
2
answers
Tool: deepTools: user-friendly tools for the normalization and visualization of deep-sequencing data
chip-seq visualisation qc tool rna-seq written 3.9 years ago by Björn • 640 • updated 3.5 years ago by xfliwz • 50
27
votes
2
answers
6.2k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 3.8 years ago by Malachi Griffith ♦ 16k • updated 5 months ago by anu014 • 140
24
votes
3
answers
11k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.9 years ago by Christian • 2.6k • updated 22 months ago by Michael Dondrup ♦ 43k
9
votes
0
answers
5.8k
views
0
answers
Tool: Rseqqc And Rna-Seqqc - Quality Control Software For Rna-Seq Data
qc tool rna-seq written 5.6 years ago by Istvan Albert ♦♦ 76k
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.8 years ago by Rad • 790
9
votes
0
answers
1.4k
views
0
answers
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
qc rna-seq written 2.9 years ago by Niek De Klein • 2.4k
13
votes
1
answer
1.9k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 6.1 years ago by Ido Tamir ♦ 4.8k • updated 6.1 years ago by Obi Griffith ♦ 16k
8
votes
2
answers
6.3k
views
2
answers
Checking kinship coefficients and relationships and comparing genotyping data to exomes
vcf pedigree kinship qc snp written 3.6 years ago by Dan Gaston ♦ 7.0k • updated 2.2 years ago by SteveL • 30
13
votes
2
answers
512
views
7 follow
2
answers
Tool: Collaboration on an empirical QC tool
qc tool rna-seq sequencing written 11 months ago by Michael Dondrup ♦ 43k
12
votes
4
answers
6.1k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.6 years ago by dataminer89 • 50 • updated 5.6 years ago by Madelaine Gogol ♦ 4.9k
8
votes
1
answer
1.6k
views
1
answer
How To Handle Ns In The Middle Of Reads
qc fastqc written 4.3 years ago by kautilya • 360 • updated 3.0 years ago by Gabriel R. • 2.3k
6
votes
1
answer
1.0k
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 6.2 years ago by Angel • 190 • updated 6.1 years ago by Pascal • 1.4k
3
votes
0
answers
1.5k
views
0
answers
Forum: Using Fastqc To Check The Quality Of High Throughput Sequence
forum qc fastqc written 5.9 years ago by Istvan Albert ♦♦ 76k
7
votes
2
answers
5.5k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 5.1 years ago by Johan • 770 • updated 3.4 years ago by Kamil • 1.8k
20
votes
3
answers
4.7k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.9 years ago by venkateshr89 • 680 • updated 4.7 years ago by rob234king • 550
7
votes
1
answer
2.8k
views
1
answer
Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 3.8 years ago by DoubleD • 130 • updated 3.8 years ago by Cyriac Kandoth ♦ 4.9k
3
votes
1
answer
1.2k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 6.5 years ago by Thomas • 720 • updated 6.3 years ago by Matt Shirley ♦ 8.3k
3
votes
1
answer
1.1k
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 6.4 years ago by Holly • 30 • updated 6.3 years ago by Chris Penkett • 470
3
votes
1
answer
2.9k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 6.1 years ago by Dan D ♦ 6.4k • updated 6.1 years ago by Sean Davis ♦ 24k
3
votes
1
answer
1.9k
views
1
answer
String Of "B" In Illumina Qseq Files From Paired-End Sequencing Run - Yet Qc Passed
illumina paired next-gen qc sequencing written 6.1 years ago by Sebastian Kurscheid • 300 • updated 6.1 years ago by Eric Fournier • 1.4k
3
votes
2
answers
2.7k
views
2
answers
Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 5.5 years ago by Aaron Diaz • 20 • updated 20 months ago by paul.e.gradie • 60
4
votes
1
answer
2.1k
views
1
answer
Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 5.2 years ago by William • 4.2k • updated 5.0 years ago by Fennan • 30
9
votes
6
answers
3.8k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.9 years ago by abc • 40 • updated 4.5 years ago by Biomonika (Noolean) ♦ 3.0k
3
votes
1
answer
3.0k
views
1
answer
Rna-Seq Read Mapping Stats/Metrics
alignment qc rna-seq written 4.8 years ago by pm2013 • 50 • updated 4.8 years ago by Mikael Huss ♦ 4.6k
3
votes
0
answers
2.2k
views
0
answers
Removing low complexity reads from RNA-seq
low-complexity qc rna-seq written 2.8 years ago by Asaf ♦ 4.8k
9
votes
3
answers
3.4k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 2.0 years ago by Picasa • 340 • updated 23 months ago by Nick • 40
2
votes
0
answers
787
views
0
answers
Is it advisable to re-sequence ChIPSeq data having reads lower than 20 million for histone marks?
chip-seq qc written 2.0 years ago by vchris_ngs • 4.4k
9
votes
4
answers
5.6k
views
4
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 23 months ago by chefarov • 80 • updated 9 weeks ago by Stephane Plaisance • 360
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