Showing: qiimereset
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16S rRNA de novo otu picking analysis
de novo otu 16s sequencing qiime written 28 days ago by dcron1310 • updated 28 days ago by 5heikki7.2k
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error in basespace qiime preprocessing
illumina basespace emp qiime preprocessing qiime written 4 weeks ago by nagpal5110 • updated 4 weeks ago by Biostar ♦♦ 20
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What is the input file for kraken to create krona plots?
krona kraken qiime written 3 months ago by arunsaikirans0 • updated 3 months ago by Sej Modha2.8k
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Names are not identical in mapping file and the otu file.
R phyloseq qiime written 4 months ago by arunsaikirans0 • updated 4 months ago by Hussain Ather820
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How reads are divided into taxonomy level in Qiime?
16s qiime written 6 months ago by agata88650 • updated 6 months ago by YaGalbi1.1k
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Making a taxonomic plot for .biom file
taxonomic plot ngs next-gen .biom qiime written 6 months ago by arunsaikirans0 • updated 6 months ago by Vijay Lakhujani1.9k
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Heat map qiime
sequencing otu qiime biom heatmap written 7 months ago by arunsaikirans0
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Qiime Split_libraries.py Unassigned reads output not present
arguments splitlibraries.py qiime written 3.4 years ago by vincentc0 • updated 9 months ago by Biostar ♦♦ 20
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Metagenome 16S reference
16s qiime written 9 months ago by agata88650
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Rarefaction curve at different sequencing depths
rarefaction metagenomics 16s qiime written 9 months ago by bioinfo680 • updated 9 months ago by Istvan Albert ♦♦ 76k
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Qiime file for Krona pie chart?
krona qiime written 23 months ago by manekineko90 • updated 10 months ago by ferstar40
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Using qiime (or mothur) with 16S V1-V3 data
mothur 16s qiime written 10 months ago by Nick240 • updated 10 months ago by Istvan Albert ♦♦ 76k
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Anyone with experience in Phyloseq in R?
R phyloseq qiime written 21 months ago by espop2360 • updated 10 months ago by Bioinformatics_NewComer300
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Microbiome 16s sequencing raw data analysis
microbiome 16s next-gen fastq qiime written 12 months ago by aidpranculis0 • updated 12 months ago by genomax46k
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Looking for an alternative to DeSeq2 for taxa higher than OTU level
R deseq2 qiime written 15 months ago by sarahmacdonald860 • updated 14 months ago by Biostar ♦♦ 20
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Illumina Miseq fastq file, barcode or no barcode? for Qiime Processing
miseq qiime barcode written 16 months ago by nidhiv0 • updated 16 months ago by Devon Ryan78k
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QIIME: OTU-picking works way too long
otu 16s qiime written 17 months ago by lotus2820
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BOLD systems database for qiime?
bold qiime written 17 months ago by agata88650 • updated 17 months ago by Jon270
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