Showing: qiimereset
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What is the input file for kraken to create krona plots?
krona kraken qiime written 12 days ago by arunsaikirans0 • updated 12 days ago by Sej Modha2.4k
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Names are not identical in mapping file and the otu file.
R phyloseq qiime written 28 days ago by arunsaikirans0 • updated 28 days ago by Hussain Ather680
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How reads are divided into taxonomy level in Qiime?
16s qiime written 3 months ago by agata88630 • updated 3 months ago by kennethcondon20071.1k
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Making a taxonomic plot for .biom file
taxonomic plot ngs next-gen .biom qiime written 3 months ago by arunsaikirans0 • updated 3 months ago by Vijay Lakhujani1.6k
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Heat map qiime
sequencing otu qiime biom heatmap written 4 months ago by arunsaikirans0
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Qiime Split_libraries.py Unassigned reads output not present
arguments splitlibraries.py qiime written 3.1 years ago by vincentc0 • updated 6 months ago by Biostar ♦♦ 20
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Metagenome 16S reference
16s qiime written 6 months ago by agata88630
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Rarefaction curve at different sequencing depths
rarefaction metagenomics 16s qiime written 6 months ago by bioinfo660 • updated 6 months ago by Istvan Albert ♦♦ 75k
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Qiime file for Krona pie chart?
krona qiime written 20 months ago by manekineko90 • updated 6 months ago by ferstar40
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Using qiime (or mothur) with 16S V1-V3 data
mothur 16s qiime written 7 months ago by Nick240 • updated 7 months ago by Istvan Albert ♦♦ 75k
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Anyone with experience in Phyloseq in R?
R phyloseq qiime written 18 months ago by espop2350 • updated 7 months ago by Bioinformatics_NewComer210
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Microbiome 16s sequencing raw data analysis
microbiome 16s next-gen fastq qiime written 9 months ago by aidpranculis0 • updated 9 months ago by genomax40k
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Looking for an alternative to DeSeq2 for taxa higher than OTU level
R deseq2 qiime written 12 months ago by sarahmacdonald860 • updated 11 months ago by Biostar ♦♦ 20
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Illumina Miseq fastq file, barcode or no barcode? for Qiime Processing
miseq qiime barcode written 13 months ago by nidhiv0 • updated 13 months ago by Devon Ryan74k
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QIIME: OTU-picking works way too long
otu 16s qiime written 13 months ago by lotus2820
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BOLD systems database for qiime?
bold qiime written 13 months ago by agata88630 • updated 13 months ago by Jon270
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