Showing: qiimereset
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qiime error join read
qiime written 3 months ago by genomebiomex0 • updated 9 weeks ago by Biostar ♦♦ 20
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Qiime - problem with biom package in normalization
R biom qiime written 3 months ago by kperlejewski0 • updated 3 months ago by Dattatray Mongad200
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Microbiome 16s sequencing raw data analysis
microbiome 16s next-gen fastq qiime written 19 months ago by aidpranculis0 • updated 3 months ago by gtrwst90
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QIIME filter_fasta.py not removing chimeric sequences
python 16s rrna qiime chimera written 5 months ago by samanthabird0 • updated 5 months ago by toralmanvar650
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error in basespace qiime preprocessing
illumina basespace emp qiime preprocessing qiime written 7 months ago by nagpal5110 • updated 6 months ago by Kevin Blighe31k
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16S rRNA de novo otu picking analysis
de novo otu 16s sequencing qiime written 7 months ago by dcron1310 • updated 7 months ago by 5heikki7.8k
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What is the input file for kraken to create krona plots?
krona kraken qiime written 10 months ago by arunsaikirans0 • updated 10 months ago by Sej Modha3.8k
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Names are not identical in mapping file and the otu file.
R phyloseq qiime written 10 months ago by arunsaikirans0 • updated 10 months ago by Hussain Ather880
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How reads are divided into taxonomy level in Qiime?
16s qiime written 12 months ago by agata88760 • updated 12 months ago by YaGalbi1.4k
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Making a taxonomic plot for .biom file
taxonomic plot ngs next-gen .biom qiime written 13 months ago by arunsaikirans0 • updated 13 months ago by Vijay Lakhujani3.1k
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Heat map qiime
sequencing otu qiime biom heatmap written 14 months ago by arunsaikirans0
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Microbial diversity analysis using whole-genome metagenomic data
mothur taxonomy metagenome qiime written 14 months ago by elsoja30 • updated 14 months ago by Brian Bushnell16k
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Qiime Split_libraries.py Unassigned reads output not present
arguments splitlibraries.py qiime written 4.0 years ago by vincentc0 • updated 15 months ago by Biostar ♦♦ 20
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Metagenome 16S reference
16s qiime written 16 months ago by agata88760
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Rarefaction curve at different sequencing depths
rarefaction metagenomics 16s qiime written 16 months ago by bioinfo680 • updated 16 months ago by Istvan Albert ♦♦ 78k
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Qiime file for Krona pie chart?
krona qiime written 2.5 years ago by manekineko130 • updated 16 months ago by ferstar40
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Using qiime (or mothur) with 16S V1-V3 data
mothur 16s qiime written 17 months ago by Nick250 • updated 17 months ago by Istvan Albert ♦♦ 78k
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Anyone with experience in Phyloseq in R?
R phyloseq qiime written 2.4 years ago by espop2360 • updated 17 months ago by Bioinformatics_NewComer310
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Looking for an alternative to DeSeq2 for taxa higher than OTU level
R deseq2 qiime written 22 months ago by sarahmacdonald860 • updated 21 months ago by Biostar ♦♦ 20
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