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Recent Replies
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C: How get read group information from fastq files in SRA by
genomax ♦ 89k
If you are going to use GATK then you will have to use read groups. You can [make up basic RG inf...
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C: The gene names ending with *like suffix ? by
genomax ♦ 89k
The interpretation may be based on simple sequence similarity searches/alignment. That is likely ...
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C: DESeq2 with one sample eliminated by
ATpoint ♦ 38k
I will move this to acomment since it is unrelated to the actual question. OP asks about missing ...
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C: Different number of introns, exons, transcripts across RNA-Seq samples by
ATpoint ♦ 38k
Let me ask the same as here before answering: https://www.biostars.org/p/462091/#462099 In short...
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A: Blacklisted regions for mm10 by
ATpoint ♦ 38k
Current NGS blacklists based on the official paper: **Official Nature Paper (Amamiya, Kundaje, B...
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C: How to convert gallus gallus entrezID into human entrezID by
camillab. • 20
thank you for the detailed answer. Reactome has chick database and I run itthere at the end but t...
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C: How get read group information from fastq files in SRA by
zamani_2012 • 0
Many thanks for your comment. If I do not enter this information, will it not have a negative eff...
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A: How get read group information from fastq files in SRA by
ATpoint ♦ 38k
This option is not mandatory, just leave it blank. There is no formal definition of a read group,...
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C: How to download synteny form ENSEMBL by
yunzhe.jiang97 • 0
Hi, I am not familiar with Perl at all. Is there another way to get syntenic regions?
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C: How to download synteny form ENSEMBL by
yunzhe.jiang97 • 0
Hi, I am not familiar with Perl at all. Is there another way to get syntenic regions?
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C: What is RNAref? by
ATpoint ♦ 38k
The tophit on google directy to your question. Please give some context and how this is related t...
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C: Is it valid to use differential gene expression analysis tool for scRNA-seq with by
tofukaj • 10
More significant genes acquired.
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