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Answer: Difference between a bin and a MAG

A: converting lowercase letters to uppercase letters in fasta file

SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Answer: High throughput protein structure homology prediction

Answer: What are the major advances in Bioinformatics since 2016

Comment: What are the major advances in Bioinformatics since 2016

Comment: Different coverage depth

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Popular Question to Bioinfonext ▴ 340

Recent Replies

Comment: Difference between a bin and a MAG by Maria Laura • 0

Thank you very for the help!!!

Comment: Running Salmon RNA quantification with pre-computed index by saipra003 • 0

I don't think that I can because this command is running on a remote cluster.

Comment: Error: RSEM Bam file for variant calling by GenoMax 104k

It is better to use `101010` button to format code portion of your post.

Comment: extracting Genus abundance info from Kraken 2 output file by arshad1292 ▴ 40

Yes that's correct that I want a subset of matrix that contains only "G". I tried your script but it produced nothing...

Comment: gene expression of specifics gene by Hyper_Odin ▴ 90

You don't have necessary package installed/loaded in your workspace. - If already installed then do this- library("gplots") - If not the…

Comment: Network construction and analysis using WGCNA by andres.firrincieli ★ 1.6k

> I think of doing WGCNA analysis in two different ways, 1) consider all > subtypes as different traits and doing the analysis and 2) doing…

Comment: Different coverage depth by wes ▴ 50

Thanks Carlo for answering my first question. I had rerun the samtools mpileup by increasing the depth coverage in the -d option. Hopefully…

Comment: color coded PCA plot in R for a combined set by raalsuwaidi ▴ 10

thanks for such an answer. seems very simple. but for some reason its not working for me. i get the below diagram which doesnt represent t…

Comment: PCA results shows mixed population ? by putty • 0

Thank you for the response. Yup the server does ask you about population ethnicity (i am not sure whether this is for the reference panel o…

Comment: How to get orthologs between Two species in orthodb by hemantcnaik • 0

@GenoMax Thank you for the replay I have seen already this page, need orthologs genes between mouse and Chiken. is it possible to get on t…

Answer: Reliable Fastq compression programs by Divon ▴ 10

You might also want to try my software Genozip - it provides much better compression than .gz, and has several other advantages too: - Y…

Comment: Running Salmon RNA quantification with pre-computed index by Mensur Dlakic ★ 12k

This could be a memory problem. Can you monitor the RAM usage in a separate window while this is running? You may want to copy the program…

Answer: Defining residues as buried or exposed based in ASAs/RSAs by Mensur Dlakic ★ 12k

> But how can we make the classification based on these numbers? First, it doesn't have to be a classification - it can be a regression.…

Comment: rMATS BAM file MemoryError Issue by saipra003 • 0

Hi GenoMax, Please look at Pierre Lindenbaum's response below. Instead of passing a .txt file with pathways to the .bam files, I was passi…

Comment: error in R by Bioinformatics1 • 0

Did you read the whole of my questions?

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