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written 21 months ago by
mary • 0
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21 months ago by
Brian Bushnell ♦ 16k
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written 3.9 years ago by
Aura • 0
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3.9 years ago by
Antonio R. Franco • 3.9k
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C: awk and sed in bash script and no output by
cpad0112 • 9.9k
I am not sure if `tr -d '\r' > $i_get_signals.sh` works. This should be `tr -d '\r' > $i"...
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C: How to remove duplicate sequences in fasta file using python? by
jrj.healey ♦ 8.5k
It should be noted this only checks for duplicates based on their IDs, which is not always going ...
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C: Can't load Bioconductor package genomewidesnp6cdf in R by
andbeonetraveler • 0
Please see above; if I do that I get: Error in getCdfInfo(object) : Could not obtain ...
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A: Remove duplicates in fasta file based on ID by
michau • 10
Copied from my other post: https://www.biostars.org/p/292207/#349551 Learn to use Biopython libr...
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A: How to remove duplicate sequences in fasta file using python? by
michau • 10
Learn to use Biopython library. It's handy as hell. You can use any format as in/out from Bi...
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A: awk and sed in bash script and no output by
Alex Reynolds ♦ 26k
Here's another way to do things that might be a little simpler and help with debugging: #!/b...
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A: How To Remove The Same Sequences In The Fasta Files? by
michau • 10
In Jalview (best alignment viewer) option "remove redundancy". You can select treshold. Ctrl + D ...
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C: awk and sed in bash script and no output by
WouterDeCoster ♦ 34k
It is related to bioinformatics, but only borderline. It is essentially just unix text processing...
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C: awk and sed in bash script and no output by
WouterDeCoster ♦ 34k
It shouldn't make a difference, but with the extension `.sh` you suggest this is a shell script.
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C: awk and sed in bash script and no output by
WouterDeCoster ♦ 34k
Yeah, of course, and while file extensions have almost no meaning in unix it is quite confusing t...
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A: What is the Sleuth intercept and how can Sleuth be used when you have >2 treatme by
lalvarez • 10
Did you get it? I'm now in the same situation. Thanks!! Lucía
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C: May I use numreads for doing DGE after quantifying by Salmon by
lkianmehr • 30
but I taught that tximport should be used just for summarizing transcript_id to gene_id
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