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<prev • 15 results • page 1 of 1 • next >
19
votes
2
answers
167
views
11 follow
2
answers
Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
bamqc multi-bamqc qualimap written 12 days ago by dare_devil • 1.3k
1
vote
1
answer
129
views
1
answer
Problem with qualimap BAM file
qualimap bam bamfile error rna-seq written 5 weeks ago by luzglongoria • 40 • updated 5 weeks ago by Pierre Lindenbaum ♦ 133k
1
vote
1
answer
141
views
1
answer
Count coverage WGS data
genome bam qc qualimap written 3 months ago by mailard • 0
2
votes
2
answers
374
views
2
answers
Why there are low assigned reads in featureCounts output and different outputs for quality checks?
reads alignment featurecounts qualimap rna-seq written 3 months ago by newbie • 90 • updated 3 months ago by rpolicastro ♦ 3.2k
0
votes
0
answers
239
views
0
answers
lower exon percentage
alignment paired-end qualimap star rna-seq written 5 months ago by anubratadas • 0
2
votes
0
answers
411
views
0
answers
Qualimap out of memory
qualimap qc memory rna-seq written 7 months ago by mar77 • 20
2
votes
1
answer
755
views
1
answer
why my WGS bam file (after alignment) shows more reads than the starting fastq file
total read wgs qualimap qc fastqc written 15 months ago by maria2019 • 130
0
votes
1
answer
634
views
1
answer
qualimap error:Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using 'localhost:22.0' as the value of the DISPLAY variable.
x11 qualimap written 16 months ago by Nich • 10 • updated 16 months ago by Pierre Lindenbaum ♦ 133k
0
votes
0
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597
views
0
answers
Target mean coverage : Picard Versus Qualimap, why so different?
metrics ngs picard target mean coverage qualimap written 20 months ago by pegeot.henri • 0
0
votes
1
answer
859
views
1
answer
why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
bwamem bowtie2 wes qualimap written 22 months ago by maria2019 • 130 • updated 22 months ago by h.mon ♦ 32k
8
votes
2
answers
779
views
5 follow
2
answers
Good mean coverage but big std in coverage
bamqc rnaseq qualimap coverage written 2.4 years ago by Pin.Bioinf • 280
4
votes
0
answers
1.5k
views
0
answers
Why difference in Hisat2 and bamqc from qualimap results?
bamqc qualimap rna-seq hisat2 written 2.8 years ago by Vasu • 510 • updated 2.8 years ago by Biostar ♦♦ 20
5
votes
1
answer
3.2k
views
7 follow
1
answer
understanding contig statistics
assembly mapping reads qualimap coverage spades written 3.9 years ago by mary • 0 • updated 3.9 years ago by Brian Bushnell ♦ 17k
0
votes
0
answers
973
views
0
answers
Abnormal coverage profile
quality qualimap rna-seq rna degradation written 4.6 years ago by Gary • 480
1
vote
1
answer
2.7k
views
1
answer
Qualimap result interpretation
qualimap written 6.1 years ago by Aura • 0 • updated 6.1 years ago by Antonio R. Franco • 4.5k
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