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Quality Control After Alignment
scrna-seq quality control rna-seq hisat2 written 6 weeks ago by asumani • 60
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Alternatives to Transrate
assembly evaluation quality control rna-seq written 9 weeks ago by Dunois • 150 • updated 6 weeks ago by Biostar ♦♦ 20
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100
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QC with RNA-SeQC output weird
alignment quality control rna-seq star written 6 weeks ago by koaeb • 10
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106
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Sequence of steps in quality control of genetic data
genome quality control imputation plink written 4 months ago by kl • 10 • updated 4 months ago by genomax ♦ 91k
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161
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FASTQC result FAILED in adapter content and k-mer section!!!
wgs quality control fastqc written 4 months ago by dpc • 150
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What are the normal ranges of RNA-seq quality control metrics (with picard)?
alignment quality control rna-seq written 5 months ago by 513185288ccf • 0
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306
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use samtools stats to plot quality of alignment
alignment visualization quality control written 6 months ago by marongiu.luigi • 520 • updated 6 months ago by ATpoint ♦ 40k
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224
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WES NGS Quality Control
gatk ngs quality control bwa written 7 months ago by SurdanBurasi • 0 • updated 7 months ago by igor ♦ 11k
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281
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Hardy-Weinberg Equilibrium Quality Control
gwas hwe hardy-weinberg quality control snp written 11 months ago by sarvism • 0
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293
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how to confirm that mapped read are accurate?
wgs next-gen confirmation quality control written 13 months ago by marongiu.luigi • 520
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AB SOLiD small RNA-seq data handling
quality control rna-seq written 13 months ago by Rodrigo Streit • 10
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1
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504
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1
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Host Decontamination: bbTools or Samtools?
metagenomics quality control decontamination written 15 months ago by lotus28 • 70 • updated 15 months ago by genomax ♦ 91k
6
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1
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414
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1
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Bbduk filters away good reads
preprocessing next-gen quality control filtering written 17 months ago by dt • 30
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325
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Grateful for advice on proteomic QC
proteomics mass spectrometry quality control written 17 months ago by andrew • 0
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325
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Affymetrix Probe detection call
probes quality control rna-seq affymetrix written 18 months ago by maxininfa • 0
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how to remove warning and failures observed inQuality report by Fastqc for RNA-Seq data
quality control rna-seq fastqc written 18 months ago by aiswaryabioinfo • 20
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ChIP-Seq Quality Control and the RelCC measure
quality control chip-seq chipqc written 19 months ago by ldyer2006 • 40
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1
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930
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1
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Quality control on 1000 genome vcf file
vcf quality control 1000 genome written 20 months ago by seta • 1.4k • updated 20 months ago by regmkbl ♦ 66k
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1
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300
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1
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'Reverse' quality trimming
fastq quality control sequencing written 21 months ago by SV13 • 0 • updated 21 months ago by genomax ♦ 91k
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1
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386
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Threshold Quality Default Number
trimmomatic leading quality control threshold written 24 months ago by vitorgomesbio • 0 • updated 24 months ago by finswimmer ♦ 13k
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471
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The quality of intermediate base of read is not good.
rnaseq quality control fastqqc written 2.0 years ago by 11yj3312 • 0
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1
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Fix per tile sequence quality?
dnaseq quality control fastqc illumina written 2.3 years ago by serpalma.v • 40 • updated 2.3 years ago by genomax ♦ 91k
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Quality control & Processing of RNA seq data
quality control rna-seq written 5.8 years ago by David_emir • 370 • updated 2.4 years ago by Biostar ♦♦ 20
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Isn't fastq file header suppose to have barcode sequence?
quality control chip-seq written 2.7 years ago by salamandra • 330 • updated 2.5 years ago by Biostar ♦♦ 20
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5 follow
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fastqc adapter content
sequencing quality control fastqc written 2.7 years ago by prasundutta87 • 380 • updated 2.7 years ago by genomax ♦ 91k
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4
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4
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Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 4.5 years ago by chen • 2.1k • updated 2.8 years ago by zhimenggan • 0
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News: Upcoming Hands-On NGS Data Analysis Workshops 2018
dna-seq news mapping rna-seq quality control workshop written 2.9 years ago by David Langenberger ♦ 9.5k
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539
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"ChAMP" package quality controls
R quality control packages champ written 2.9 years ago by niutster • 100
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Evaluation of RSeQC report
rseqc quality control rna-seq bam_stat.py written 2.9 years ago by fawazfebin • 100 • updated 2.9 years ago by regmkbl ♦ 66k
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is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 3.0 years ago by Lila M • 860
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