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<prev • 146 results • page 1 of 5 • next >
3
votes
0
answers
1.7k
views
0
answers
Which Msa Scoring Methods Did You Use?
quality multiple written 7.8 years ago by Aleksandr Levchuk ♦ 3.1k • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
3
answers
7.8k
views
8 follow
3
answers
Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.2 years ago by siyu • 130 • updated 7 weeks ago by Biostar ♦♦ 20
51
votes
3
answers
3.4k
views
7 follow
3
answers
What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 8.5 years ago by Jeremy Leipzig ♦ 18k • updated 3 months ago by Biostar ♦♦ 20
4
votes
0
answers
319
views
0
answers
Unexpected hump in GC content distribution from FasQC report in ChIP-seq
quality chip-seq fastqc written 3 months ago by msimmer92 • 180
7
votes
1
answer
575
views
1
answer
Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 6 months ago by msimmer92 • 180
0
votes
0
answers
212
views
0
answers
Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 5 months ago by vitorgomesbio • 0
12
votes
2
answers
6.2k
views
2
answers
What is a bad GATK Genotype Quality?
quality snp written 4.0 years ago by devenvyas • 570 • updated 6 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.5k
views
1
answer
Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 9.0 years ago by Joseph Hughes • 2.7k • updated 9 months ago by RamRS ♦ 21k
13
votes
3
answers
6.8k
views
3
answers
What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 9.2 years ago by Allpowerde • 1.2k • updated 9 months ago by RamRS ♦ 21k
1
vote
1
answer
297
views
1
answer
miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 9 months ago by kim.malek90 • 0 • updated 9 months ago by genomax ♦ 68k
2
votes
1
answer
335
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 10 months ago by f.a.galkin • 40 • updated 10 months ago by finswimmer ♦ 11k
81
votes
9
answers
22k
views
31 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 6.4 years ago by diltsjeri • 440 • updated 11 months ago by alslonik • 90
3
votes
2
answers
619
views
2
answers
Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 12 months ago by Nalini • 10 • updated 12 months ago by d-cameron • 2.0k
4
votes
1
answer
361
views
1
answer
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 12 months ago by Volka • 50 • updated 12 months ago by Devon Ryan ♦ 90k
1
vote
1
answer
528
views
1
answer
Per tail sequence quality fail
quality tile fastqc written 12 months ago by bwczech • 70 • updated 12 months ago by Devon Ryan ♦ 90k
1
vote
2
answers
273
views
2
answers
Removal of non quality read in fastq file
fastq quality written 12 months ago by akbioinfo14 • 0 • updated 12 months ago by Bastien Hervé ♦ 4.2k
0
votes
1
answer
410
views
1
answer
Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 12 months ago by brismiller • 10 • updated 12 months ago by Wietje • 200
0
votes
0
answers
510
views
0
answers
Per base sequence quality and per base N content
quality fastqc written 13 months ago by bwczech • 70
2
votes
1
answer
828
views
1
answer
Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 16 months ago by oxfordsoccer • 10 • updated 16 months ago by Sej Modha ♦ 4.2k
1
vote
1
answer
501
views
1
answer
Opinion on Quality basecall threshold to use
vcf filter quality qual written 18 months ago by ricfoz • 30
0
votes
0
answers
796
views
0
answers
How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 18 months ago by jule • 0
0
votes
0
answers
582
views
0
answers
Quality controls with plink
controls quality plink written 18 months ago by vgenepi • 10
3
votes
1
answer
1.4k
views
1
answer
Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 21 months ago by cristian • 220 • updated 21 months ago by Vijay Lakhujani ♦ 4.1k
4
votes
1
answer
1.4k
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 22 months ago by deepti1rao • 20
88
votes
5
answers
2.1k
views
18 follow
5
answers
Forum: Declining quality of biostars
quality forum written 23 months ago by mforde84 • 1.2k • updated 23 months ago by Charles Plessy • 2.7k
0
votes
2
answers
606
views
2
answers
How to measure the quality of a predicted protein?
quality prediction protein written 24 months ago by l.souza • 70 • updated 23 months ago by jrj.healey ♦ 12k
1
vote
0
answers
515
views
0
answers
What's the difference between Unaligned and Unmatched in rnaQUAST output?
assembly quality rna-seq rnaquast written 24 months ago by lcsousapaula • 10
3
votes
2
answers
1.4k
views
2
answers
Publication-Quality Multiple Sequence Alignment
image graphics quality msa publication written 2.0 years ago by l.souza • 70
2
votes
0
answers
736
views
0
answers
What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 2.0 years ago by Vijay Lakhujani ♦ 4.1k
3
votes
1
answer
1.1k
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 2.1 years ago by ognjen011 • 170 • updated 2.1 years ago by mastal511 • 2.0k
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