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<prev • 149 results • page 1 of 5 • next >
2
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1
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121
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In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 8 days ago by Joseph Hughes • 2.7k • updated 7 days ago by h.mon ♦ 27k
0
votes
2
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187
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2
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 5 weeks ago by sneha108ss • 10
0
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0
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134
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0
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 8 weeks ago by bz3 • 0
3
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0
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1.7k
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0
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Which Msa Scoring Methods Did You Use?
quality multiple written 8.1 years ago by Aleksandr Levchuk ♦ 3.2k • updated 4 months ago by Biostar ♦♦ 20
2
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3
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8.0k
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8 follow
3
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.4 years ago by siyu • 130 • updated 4 months ago by Biostar ♦♦ 20
51
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3
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3.5k
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7 follow
3
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What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 8.8 years ago by Jeremy Leipzig ♦ 18k • updated 6 months ago by Biostar ♦♦ 20
4
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0
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447
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0
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Unexpected hump in GC content distribution from FasQC report in ChIP-seq
quality chip-seq fastqc written 6 months ago by msimmer92 • 200
7
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1
answer
943
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1
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Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 10 months ago by msimmer92 • 200
0
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0
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282
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0
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 8 months ago by vitorgomesbio • 0
12
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2
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6.6k
views
2
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What is a bad GATK Genotype Quality?
quality snp written 4.2 years ago by devenvyas • 590 • updated 9 months ago by Biostar ♦♦ 20
2
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1
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1.5k
views
1
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Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 9.3 years ago by Joseph Hughes • 2.7k • updated 12 months ago by RamRS ♦ 24k
13
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3
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6.9k
views
3
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What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 9.4 years ago by Allpowerde • 1.2k • updated 12 months ago by RamRS ♦ 24k
1
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1
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405
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1
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miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 13 months ago by kim.malek90 • 0 • updated 13 months ago by genomax ♦ 71k
2
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1
answer
406
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1
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Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 14 months ago by f.a.galkin • 40 • updated 14 months ago by finswimmer ♦ 12k
81
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9
answers
23k
views
31 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 6.7 years ago by diltsjeri • 440 • updated 14 months ago by alslonik • 110
3
votes
2
answers
746
views
2
answers
Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 15 months ago by Nalini • 10 • updated 15 months ago by d-cameron • 2.1k
4
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1
answer
416
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1
answer
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 15 months ago by Volka • 50 • updated 15 months ago by Devon Ryan ♦ 91k
1
vote
1
answer
632
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1
answer
Per tail sequence quality fail
quality tile fastqc written 15 months ago by bwczech • 70 • updated 15 months ago by Devon Ryan ♦ 91k
1
vote
2
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347
views
2
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Removal of non quality read in fastq file
fastq quality written 15 months ago by akbioinfo14 • 0 • updated 15 months ago by Bastien Hervé ♦ 4.4k
0
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1
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482
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1
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Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 15 months ago by brismiller • 10 • updated 15 months ago by Wietje • 200
0
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0
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617
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0
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Per base sequence quality and per base N content
quality fastqc written 16 months ago by bwczech • 70
2
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1
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1.0k
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1
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Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 19 months ago by oxfordsoccer • 10 • updated 19 months ago by Sej Modha ♦ 4.4k
1
vote
1
answer
552
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1
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Opinion on Quality basecall threshold to use
vcf filter quality qual written 21 months ago by ricfoz • 30
0
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0
answers
892
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0
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How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 21 months ago by jule • 0
0
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0
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680
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0
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Quality controls with plink
controls quality plink written 21 months ago by vgenepi • 10
3
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1
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1.6k
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1
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Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 2.0 years ago by cristian • 230 • updated 2.0 years ago by lakhujanivijay ♦ 4.4k
4
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1
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1.5k
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1
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Minimum length of reads
reads processing ngs trimming quality written 2.1 years ago by deepti1rao • 20
88
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5
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2.2k
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18 follow
5
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Forum: Declining quality of biostars
quality forum written 2.2 years ago by mforde84 • 1.2k • updated 2.2 years ago by Charles Plessy • 2.7k
0
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2
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661
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2
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How to measure the quality of a predicted protein?
quality prediction protein written 2.2 years ago by l.souza • 70 • updated 2.2 years ago by Joe ♦ 14k
1
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0
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572
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0
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What's the difference between Unaligned and Unmatched in rnaQUAST output?
assembly quality rna-seq rnaquast written 2.2 years ago by lcsousapaula • 10
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