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<prev • 157 results • page 1 of 6 • next >
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Clustering of SNPs toward same QUAL values
quality freebayes snp variants written 15 days ago by Begonia_pavonina • 20 • updated 15 days ago by Biostar ♦♦ 20
1
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1
answer
139
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1
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sequencing depth vs quality assembly
assembly quality written 11 weeks ago by v.shapovalova1 • 10 • updated 11 weeks ago by Mensur Dlakic • 6.0k
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1
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107
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1
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How can I filter RNA-seq reads to remove reads where more than 50% of the read is low quality (Q<20)?
genome quality rna-seq filtering written 11 weeks ago by mar77 • 0
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2
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233
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2
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quality check of bam files
gatk quality bam sam written 12 weeks ago by gabri.mochales • 30 • updated 12 weeks ago by Pierre Lindenbaum ♦ 129k
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2
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838
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How to measure the quality of a predicted protein?
quality prediction protein written 3.1 years ago by l.souza • 70 • updated 3 months ago by geethus2009 • 0
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4.5k
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How To Set A Threshold On Mapping Quality
quality mapping written 9.5 years ago by Junfeng • 330 • updated 5 months ago by caro-ca • 20
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1
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175
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1
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What kind of biological factors can reduce the quality of reads?
quality sequence low sequencing written 7 months ago by ericjanhoekstra • 0 • updated 7 months ago by genomax ♦ 87k
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200
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Read quality only 14
sequencing quality quality score identical fastqc written 7 months ago by ericjanhoekstra • 0 • updated 7 months ago by genomax ♦ 87k
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1
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296
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1
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How to calculate TIN score of the GSE dataset to perform some post quality checks on RNASeq dataset
quality rna-seq written 9 months ago by naseerkhan861 • 0 • updated 9 months ago by i.sudbery ♦ 8.4k
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How can I use BBMap reformat.sh to correctly retrieve fastq quality scores from a bam file?
software error reformat.sh quality bam bbmap written 10 months ago by thequokka • 0
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1
answer
324
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In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 11 months ago by Joseph Hughes • 2.8k • updated 11 months ago by h.mon ♦ 30k
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2
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 12 months ago by sneha108ss • 10
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540
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 12 months ago by bz3 • 0
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Which Msa Scoring Methods Did You Use?
quality multiple written 9.0 years ago by Aleksandr Levchuk ♦ 3.2k • updated 15 months ago by Biostar ♦♦ 20
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3
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8.5k
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8 follow
3
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 7.3 years ago by siyu • 130 • updated 15 months ago by Biostar ♦♦ 20
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3
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3.7k
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7 follow
3
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What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 9.7 years ago by Jeremy Leipzig ♦ 19k • updated 17 months ago by Biostar ♦♦ 20
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858
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Unexpected hump in GC content distribution from FasQC report in ChIP-seq
quality chip-seq fastqc written 17 months ago by msimmer92 • 250
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1
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Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 20 months ago by msimmer92 • 250
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420
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 19 months ago by vitorgomesbio • 0
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2
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2
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What is a bad GATK Genotype Quality?
quality snp written 5.1 years ago by devenvyas • 640 • updated 20 months ago by Biostar ♦♦ 20
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1
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1.6k
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1
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Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 10.2 years ago by Joseph Hughes • 2.8k • updated 23 months ago by RamRS ♦ 28k
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3
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7.2k
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3
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What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 10.3 years ago by Allpowerde • 1.2k • updated 23 months ago by RamRS ♦ 28k
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1
answer
601
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1
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miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 23 months ago by kim.malek90 • 0 • updated 23 months ago by genomax ♦ 87k
2
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1
answer
643
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1
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Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 2.0 years ago by f.a.galkin • 40 • updated 2.0 years ago by finswimmer ♦ 13k
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9
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27k
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31 follow
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How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 7.5 years ago by diltsjeri • 440 • updated 2.1 years ago by alslonik • 140
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2
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1.3k
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2
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Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 2.1 years ago by Nalini • 10 • updated 2.1 years ago by d-cameron • 2.2k
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Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 2.2 years ago by Volka • 90 • updated 2.2 years ago by Devon Ryan ♦ 96k
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1.0k
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1
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Per tail sequence quality fail
quality tile fastqc written 2.2 years ago by misterie • 90 • updated 2.2 years ago by Devon Ryan ♦ 96k
1
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1
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621
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1
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Removal of non quality read in fastq file
fastq quality written 2.2 years ago by akbioinfo14 • 0 • updated 2.2 years ago by Bastien Hervé ♦ 4.7k
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1
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746
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1
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Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 2.2 years ago by brismiller • 40 • updated 2.2 years ago by Wietje • 210
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