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<prev • 145 results • page 1 of 5 • next >
7
votes
1
answer
261
views
1
answer
Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 12 weeks ago by msimmer92 • 100
0
votes
0
answers
138
views
0
answers
Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 7 weeks ago by vitorgomesbio • 0
12
votes
2
answers
5.6k
views
2
answers
What is a bad GATK Genotype Quality?
quality snp written 3.7 years ago by devenvyas • 550 • updated 10 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
1.4k
views
1
answer
Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 8.7 years ago by Joseph Hughes • 2.7k • updated 5 months ago by RamRS ♦ 20k
13
votes
3
answers
6.6k
views
3
answers
What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 8.8 years ago by Allpowerde • 1.2k • updated 5 months ago by RamRS ♦ 20k
1
vote
1
answer
195
views
1
answer
miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 5 months ago by kim.malek90 • 0 • updated 5 months ago by genomax ♦ 62k
2
votes
1
answer
246
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 6 months ago by f.a.galkin • 10 • updated 6 months ago by finswimmer ♦ 9.8k
79
votes
9
answers
20k
views
29 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 6.1 years ago by diltsjeri • 420 • updated 7 months ago by alslonik • 70
3
votes
2
answers
411
views
2
answers
Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 8 months ago by Nalini • 10 • updated 8 months ago by d-cameron • 2.0k
4
votes
1
answer
293
views
1
answer
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 8 months ago by Volka • 30 • updated 8 months ago by Devon Ryan ♦ 88k
1
vote
1
answer
373
views
1
answer
Per tail sequence quality fail
quality tile fastqc written 8 months ago by bwczech • 60 • updated 8 months ago by Devon Ryan ♦ 88k
1
vote
2
answers
216
views
2
answers
Removal of non quality read in fastq file
fastq quality written 8 months ago by akbioinfo14 • 0 • updated 8 months ago by Bastien Hervé ♦ 3.3k
0
votes
1
answer
313
views
1
answer
Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 8 months ago by brismiller • 10 • updated 8 months ago by Wietje • 180
0
votes
0
answers
368
views
0
answers
Per base sequence quality and per base N content
quality fastqc written 9 months ago by bwczech • 60
2
votes
1
answer
592
views
1
answer
Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 12 months ago by oxfordsoccer • 10 • updated 12 months ago by Sej Modha ♦ 4.0k
1
vote
1
answer
435
views
1
answer
Opinion on Quality basecall threshold to use
vcf filter quality qual written 14 months ago by ricfoz • 20
0
votes
0
answers
645
views
0
answers
How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 14 months ago by jule • 0
0
votes
0
answers
454
views
0
answers
Quality controls with plink
controls quality plink written 14 months ago by vgenepi • 10
3
votes
1
answer
1.1k
views
1
answer
Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 17 months ago by cristian • 180 • updated 17 months ago by biokoala ♦ 3.6k
4
votes
1
answer
1.2k
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 18 months ago by deepti1rao • 20
88
votes
5
answers
2.0k
views
18 follow
5
answers
Forum: Declining quality of biostars
quality forum written 19 months ago by mforde84 • 1.2k • updated 19 months ago by Charles Plessy • 2.6k
0
votes
2
answers
537
views
2
answers
How to measure the quality of a predicted protein?
quality prediction protein written 20 months ago by l.souza • 60 • updated 19 months ago by jrj.healey ♦ 10k
1
vote
0
answers
455
views
0
answers
What's the difference between Unaligned and Unmatched in rnaQUAST output?
assembly quality rna-seq rnaquast written 20 months ago by lcsousapaula • 10
3
votes
2
answers
1.2k
views
2
answers
Publication-Quality Multiple Sequence Alignment
image graphics quality msa publication written 20 months ago by l.souza • 60
2
votes
0
answers
612
views
0
answers
What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 20 months ago by biokoala ♦ 3.6k
3
votes
1
answer
945
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 21 months ago by ognjen011 • 150 • updated 21 months ago by mastal511 • 2.0k
8
votes
1
answer
2.1k
views
6 follow
1
answer
MiSeq reagent kit version 3 : bad reads qualities
illumina quality miseq phred fastqt written 22 months ago by sacha • 1.6k • updated 22 months ago by h.mon ♦ 23k
3
votes
1
answer
1.4k
views
1
answer
How to clean bad tiles from Illumina reads?
illumina quality rna-seq trim fastqc written 2.0 years ago by blazer9191 • 0 • updated 2.0 years ago by harold.smith.tarheel • 4.3k
1
vote
0
answers
1.5k
views
0
answers
What is genotype quality scale?
varscan quality genotype written 2.2 years ago by agata88 • 760
3
votes
2
answers
3.0k
views
2
answers
Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 6.3 years ago by Aaron Diaz • 20 • updated 2.5 years ago by paul.e.gradie • 80
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