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2
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216
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Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 10 weeks ago by oxfordsoccer • 10 • updated 10 weeks ago by Sej Modha • 2.8k
1
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1
answer
218
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1
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Opinion on Quality basecall threshold to use
vcf filter quality qual written 4 months ago by ricfoz • 20
0
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0
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274
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0
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How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 4 months ago by jule • 0
0
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0
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206
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0
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Quality controls with plink
controls quality plink written 4 months ago by vgenepi • 0
2
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1
answer
485
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1
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Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 7 months ago by cristian • 80 • updated 7 months ago by Vijay Lakhujani • 1.9k
4
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1
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651
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1
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Minimum length of reads
reads processing ngs trimming quality written 8 months ago by deepti1rao • 0
88
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5
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1.6k
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18 follow
5
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Forum: Declining quality of biostars
quality forum written 10 months ago by mforde84 • 1.1k • updated 9 months ago by Charles Plessy • 2.4k
0
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2
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360
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2
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How to measure the quality of a predicted protein?
quality prediction protein written 10 months ago by l.souza • 60 • updated 10 months ago by jrj.healey • 3.9k
1
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0
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297
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0
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What's the difference between Unaligned and Unmatched in rnaQUAST output?
assembly quality rna-seq rnaquast written 10 months ago by lcsousapaula • 10
3
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2
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658
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2
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Publication-Quality Multiple Sequence Alignment
image graphics quality msa publication written 10 months ago by l.souza • 60
2
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0
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349
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0
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What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 10 months ago by Vijay Lakhujani • 1.9k
3
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1
answer
559
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1
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FastQC and adapters
adapters quality sequence sequencing written 11 months ago by ognjen011 • 150 • updated 11 months ago by mastal511 • 1.8k
8
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1
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1.1k
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6 follow
1
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MiSeq reagent kit version 3 : bad reads qualities
illumina quality miseq phred fastqt written 12 months ago by sacha • 1.1k • updated 12 months ago by h.mon ♦ 13k
3
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1
answer
833
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1
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How to clean bad tiles from Illumina reads?
illumina quality rna-seq trim fastqc written 14 months ago by blazer9191 • 0 • updated 14 months ago by harold.smith.tarheel • 4.1k
1
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0
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995
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0
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What is genotype quality scale?
varscan quality genotype written 16 months ago by agata88 • 650
3
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2
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2.8k
views
2
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Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 5.5 years ago by Aaron Diaz • 20 • updated 20 months ago by paul.e.gradie • 60
0
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0
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504
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0
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Abnormal coverage profile
quality qualimap rna-seq rna degradation written 21 months ago by Gary • 440
23
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0
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5.5k
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13 follow
0
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Tool: Quast Is A Convenient Tool For Assembly Evaluation
assembly quality tool written 5.2 years ago by Nikolay Vyahhi • 1.1k • updated 22 months ago by Vijay Lakhujani • 1.9k
0
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1
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788
views
1
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GATK Mapping quality value
gatk quality map written 22 months ago by Kritika • 250 • updated 22 months ago by Pierre Lindenbaum ♦ 106k
4
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2
answers
1.7k
views
2
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reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 22 months ago by Assa Yeroslaviz • 1.1k • updated 22 months ago by Brian Bushnell ♦ 15k
0
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2
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789
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2
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Galaxy NGS Tutorial (Stuck at a point)
ngs galaxy quality workshop rna-seq written 23 months ago by pablosolar.r • 20
3
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2
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597
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2
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Data from the sequencing of the whole genome with LOW quality.
genome sra quality next-gen sequencing written 2.0 years ago by mieszko91 • 30 • updated 2.0 years ago by jotan • 1.2k
0
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0
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655
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0
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Pick highest quality fastq reads
filter fastq quality written 2.1 years ago by Biomonika (Noolean) ♦ 3.0k
0
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0
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1.3k
views
0
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ASCII conversion from bam file
quality ascii written 3.4 years ago by Korsocius • 80 • updated 2.1 years ago by Biostar ♦♦ 20
6
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2
answers
889
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2
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How to plot a histogram for billions of genotype quality values?
vcf R quality python written 2.1 years ago by William • 4.2k • updated 2.1 years ago by biocyberman • 650
9
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1
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2.0k
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1
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Illumina X ten samples have phred scores out of range [0,41]
sequencing quality next-gen phred-encoding written 2.2 years ago by Wai Yi Leung • 30 • updated 2.2 years ago by Dan D ♦ 6.4k
0
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2
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949
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2
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Generating Read Length?
quality phred rna-seq read length written 2.2 years ago by nikelle.petrillo • 80 • updated 2.2 years ago by Chris Miller ♦ 19k
13
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2
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4.0k
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2
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FreeBayes vs GATK's HaplotypeCaller
vcf gatk quality freebayes variant caller written 2.2 years ago by Hatem Elshazly • 50 • updated 2.2 years ago by Carlos Borroto • 1.6k
2
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1
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2.4k
views
1
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What are the cut-offs during read quality filtering in Bowtie/TopHat before mapping?
tophat quality rna-seq filtering bowtie written 3.1 years ago by glados • 20 • updated 2.3 years ago by dbrowne.up • 60
0
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1
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675
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1
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Is there any program for automatically assess multialignment
quality multialignment clustal omega assess written 2.3 years ago by siso • 20 • updated 2.3 years ago by dendrov.kan • 20
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