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<prev • 151 results • page 1 of 6 • next >
3
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131
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How to calculate TIN score of the GSE dataset to perform some post quality checks on RNASeq dataset
quality rna-seq written 5 weeks ago by naseerkhan861 • 0 • updated 5 weeks ago by i.sudbery ♦ 6.3k
0
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0
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186
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0
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How can I use BBMap reformat.sh to correctly retrieve fastq quality scores from a bam file?
software error reformat.sh quality bam bbmap written 10 weeks ago by thequokka • 0
2
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1
answer
213
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1
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In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 12 weeks ago by Joseph Hughes • 2.8k • updated 12 weeks ago by h.mon ♦ 28k
0
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2
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273
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2
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Trimmomatic is removing excessive reads after trimmimg
trimmomatic quality rna-seq written 3 months ago by sneha108ss • 10
0
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0
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215
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0
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 4 months ago by bz3 • 0
3
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0
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1.8k
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0
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Which Msa Scoring Methods Did You Use?
quality multiple written 8.3 years ago by Aleksandr Levchuk ♦ 3.2k • updated 7 months ago by Biostar ♦♦ 20
2
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3
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8.1k
views
8 follow
3
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.6 years ago by siyu • 130 • updated 7 months ago by Biostar ♦♦ 20
51
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3
answers
3.5k
views
7 follow
3
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What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 9.0 years ago by Jeremy Leipzig ♦ 18k • updated 9 months ago by Biostar ♦♦ 20
4
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0
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539
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0
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Unexpected hump in GC content distribution from FasQC report in ChIP-seq
quality chip-seq fastqc written 9 months ago by msimmer92 • 210
8
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1
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1.3k
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1
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Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 12 months ago by msimmer92 • 210
0
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0
answers
320
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0
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Problem in Sequence Length Distribution
trimmomatic quality sequence lenght fastqc written 11 months ago by vitorgomesbio • 0
12
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2
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6.9k
views
2
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What is a bad GATK Genotype Quality?
quality snp written 4.5 years ago by devenvyas • 600 • updated 12 months ago by Biostar ♦♦ 20
2
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1
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1.5k
views
1
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Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 9.5 years ago by Joseph Hughes • 2.8k • updated 15 months ago by RamRS ♦ 25k
13
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3
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7.0k
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3
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What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 9.7 years ago by Allpowerde • 1.2k • updated 15 months ago by RamRS ♦ 25k
1
vote
1
answer
459
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1
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miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 15 months ago by kim.malek90 • 0 • updated 15 months ago by genomax ♦ 75k
2
votes
1
answer
474
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 16 months ago by f.a.galkin • 40 • updated 16 months ago by finswimmer ♦ 13k
81
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9
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24k
views
31 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 6.9 years ago by diltsjeri • 440 • updated 17 months ago by alslonik • 120
3
votes
2
answers
881
views
2
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Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 17 months ago by Nalini • 10 • updated 17 months ago by d-cameron • 2.1k
4
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1
answer
463
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1
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Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 18 months ago by Volka • 50 • updated 18 months ago by Devon Ryan ♦ 93k
2
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1
answer
734
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1
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Per tail sequence quality fail
quality tile fastqc written 18 months ago by bwczech • 90 • updated 18 months ago by Devon Ryan ♦ 93k
1
vote
1
answer
401
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1
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Removal of non quality read in fastq file
fastq quality written 18 months ago by akbioinfo14 • 0 • updated 18 months ago by Bastien Hervé ♦ 4.5k
0
votes
1
answer
540
views
1
answer
Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 18 months ago by brismiller • 10 • updated 18 months ago by Wietje • 220
0
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0
answers
692
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0
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Per base sequence quality and per base N content
quality fastqc written 18 months ago by bwczech • 90
2
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1
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1.2k
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1
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Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 22 months ago by oxfordsoccer • 10 • updated 22 months ago by Sej Modha ♦ 4.5k
1
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1
answer
590
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1
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Opinion on Quality basecall threshold to use
vcf filter quality qual written 24 months ago by ricfoz • 30
0
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0
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966
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0
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How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 24 months ago by jule • 0
0
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0
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780
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0
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Quality controls with plink
controls quality plink written 2.0 years ago by vgenepi • 10
3
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1
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1.8k
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1
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Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 2.2 years ago by cristian • 240 • updated 2.2 years ago by lakhujanivijay ♦ 4.6k
4
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1
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1.7k
views
1
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Minimum length of reads
reads processing ngs trimming quality written 2.3 years ago by deepti1rao • 30
91
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5
answers
2.2k
views
18 follow
5
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Forum: Declining quality of biostars
quality forum written 2.4 years ago by mforde84 • 1.2k • updated 2.4 years ago by Charles Plessy • 2.7k
<prev • 151 results • page 1 of 6 • next >
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