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<prev • 143 results • page 1 of 5 • next >
2
votes
1
answer
1.3k
views
1
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Assembly With Phrap With Some Missing Quality Files.
fasta assembly quality written 8.4 years ago by Joseph Hughes • 2.6k • updated 5 weeks ago by RamRS ♦ 18k
13
votes
3
answers
6.4k
views
3
answers
What To Do With An Error In The Fastq Illumina Quality Scores
quality next-gen fastx fastq sequencing written 8.5 years ago by Allpowerde • 1.2k • updated 5 weeks ago by RamRS ♦ 18k
1
vote
1
answer
104
views
1
answer
miRNA-seq quality drops at certain positions
quality mirna rna-seq fastqc written 7 weeks ago by kim.malek90 • 0 • updated 7 weeks ago by genomax ♦ 57k
2
votes
1
answer
152
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 11 weeks ago by f.a.galkin • 0 • updated 11 weeks ago by finswimmer ♦ 6.0k
75
votes
9
answers
18k
views
28 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 5.7 years ago by diltsjeri • 420 • updated 3 months ago by alslonik • 30
3
votes
2
answers
255
views
2
answers
Difference between marking duplicates and filtering BAM on phred score
duplicates next-gen picard quality alignment written 4 months ago by Nalini • 10 • updated 4 months ago by d-cameron • 1.9k
4
votes
1
answer
221
views
1
answer
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
control quality autosomes microarray probesets written 4 months ago by Volka • 30 • updated 4 months ago by Devon Ryan ♦ 85k
1
vote
1
answer
234
views
1
answer
Per tail sequence quality fail
quality tile fastqc written 4 months ago by bwczech • 0 • updated 4 months ago by Devon Ryan ♦ 85k
1
vote
2
answers
160
views
2
answers
Removal of non quality read in fastq file
fastq quality written 4 months ago by akbioinfo14 • 0 • updated 4 months ago by Bastien Hervé • 2.2k
0
votes
1
answer
221
views
1
answer
Decreased base quality at start of RNA seq reads
base quality position rna-seq sequencing written 4 months ago by brismiller • 10 • updated 4 months ago by Wietje • 150
0
votes
0
answers
242
views
0
answers
Per base sequence quality and per base N content
quality fastqc written 4 months ago by bwczech • 0
2
votes
1
answer
426
views
1
answer
Is there any alternative to QUAST software to evaluate de novo assembly results?
assembly quality evaluation quast written 8 months ago by oxfordsoccer • 10 • updated 8 months ago by Sej Modha ♦ 3.7k
1
vote
1
answer
360
views
1
answer
Opinion on Quality basecall threshold to use
vcf filter quality qual written 10 months ago by ricfoz • 20
0
votes
0
answers
483
views
0
answers
How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 10 months ago by jule • 0
0
votes
0
answers
325
views
0
answers
Quality controls with plink
controls quality plink written 10 months ago by vgenepi • 10
2
votes
1
answer
787
views
1
answer
Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 13 months ago by cristian • 130 • updated 13 months ago by Vijay Lakhujani ♦ 3.1k
4
votes
1
answer
956
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 14 months ago by deepti1rao • 20
88
votes
5
answers
1.8k
views
18 follow
5
answers
Forum: Declining quality of biostars
quality forum written 15 months ago by mforde84 • 1.2k • updated 15 months ago by Charles Plessy • 2.5k
0
votes
2
answers
469
views
2
answers
How to measure the quality of a predicted protein?
quality prediction protein written 15 months ago by l.souza • 60 • updated 15 months ago by jrj.healey ♦ 7.5k
1
vote
0
answers
394
views
0
answers
What's the difference between Unaligned and Unmatched in rnaQUAST output?
assembly quality rna-seq rnaquast written 16 months ago by lcsousapaula • 10
3
votes
2
answers
1.0k
views
2
answers
Publication-Quality Multiple Sequence Alignment
image graphics quality msa publication written 16 months ago by l.souza • 60
2
votes
0
answers
497
views
0
answers
What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 16 months ago by Vijay Lakhujani ♦ 3.1k
3
votes
1
answer
792
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 17 months ago by ognjen011 • 150 • updated 17 months ago by mastal511 • 2.0k
8
votes
1
answer
1.7k
views
6 follow
1
answer
MiSeq reagent kit version 3 : bad reads qualities
illumina quality miseq phred fastqt written 17 months ago by sacha • 1.5k • updated 17 months ago by h.mon ♦ 20k
3
votes
1
answer
1.2k
views
1
answer
How to clean bad tiles from Illumina reads?
illumina quality rna-seq trim fastqc written 20 months ago by blazer9191 • 0 • updated 20 months ago by harold.smith.tarheel • 4.2k
1
vote
0
answers
1.3k
views
0
answers
What is genotype quality scale?
varscan quality genotype written 22 months ago by agata88 • 740
3
votes
2
answers
2.9k
views
2
answers
Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 5.9 years ago by Aaron Diaz • 20 • updated 2.2 years ago by paul.e.gradie • 80
0
votes
0
answers
597
views
0
answers
Abnormal coverage profile
quality qualimap rna-seq rna degradation written 2.3 years ago by Gary • 450
24
votes
0
answers
6.1k
views
13 follow
0
answers
Tool: Quast Is A Convenient Tool For Assembly Evaluation
assembly quality tool written 5.6 years ago by Nikolay Vyahhi • 1.2k • updated 2.3 years ago by Vijay Lakhujani ♦ 3.1k
0
votes
1
answer
976
views
1
answer
GATK Mapping quality value
gatk quality map written 2.3 years ago by Kritika • 250 • updated 2.3 years ago by Pierre Lindenbaum ♦ 112k
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