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Why sequence length disturbution failed after adapter trimming: fastqc?
adaptertrimming fastqc rna-seq qualitycontrol written 4 months ago by newbie • 90 • updated 4 months ago by Sam • 120
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642
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1
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Many 35nt reads with N bases in R1(paired-end) when sequencing with Illumina NextSeq
illumina rna-seq qualitycontrol written 21 months ago by mgdrnl • 10 • updated 17 months ago by Biostar ♦♦ 20
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RNAseq paper with good data overview (quality, stats) figures?
visualization statgraphs rna-seq qualitycontrol written 5.1 years ago by Mamta • 460
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2
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Quality Control For Cnv Calling
genotyping cnv qualitycontrol written 7.0 years ago by Astoulpho • 10 • updated 5.6 years ago by jglessnd • 20
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Estimating Empirical Error Rate In Illumina Sequencing Data
illumina quality ngs qualitycontrol written 7.9 years ago by Abhi • 1.5k • updated 6.3 years ago by Biostar ♦♦ 20
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20 follow
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Tutorial: So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
tutorial fastqc qualitycontrol written 7.3 years ago by Istvan Albert ♦♦ 86k
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1
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How To Check Quality Of Snps
filter snp qualitycontrol written 7.0 years ago by roll • 330 • updated 7.0 years ago by Zev.Kronenberg ♦ 11k
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1
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Ngs-Qc-Per Base Sequence Content Failed
illumina qualitycontrol fastqc written 7.0 years ago by williamjohn360 • 90 • updated 7.0 years ago by Sean Davis ♦ 26k
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2.6k
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1
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Ngs-Qc & K-Mer
qualitycontrol written 7.0 years ago by williamjohn360 • 90 • updated 7.0 years ago by jackuser1979 • 880
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Java Error "Concurrent.Executionexception" While Running Trimmomatic V0.32
java qualitycontrol written 7.0 years ago by arnstrm • 1.8k
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How To Check The Concordance Of Genotypes In Duplicate Samples In Bed And Ped Formats (Produced Via Plink)
duplicates snps genotype qualitycontrol written 7.2 years ago by snp_cook12 • 0 • updated 7.2 years ago by Istvan Albert ♦♦ 86k
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Set Genotype Of Specific Sample/Genotype Comb To Unknown In Multisample Vcf File
vcf qualitycontrol written 7.2 years ago by Maarten • 0 • updated 7.2 years ago by Pierre Lindenbaum ♦ 133k
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6 follow
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What Are The Best Qc Tools For Exome Seq, Rna Seq, Single/Paired End, Etc?
sequencing pipeline qualitycontrol written 7.2 years ago by bw. • 150 • updated 7.2 years ago by Michele Busby • 2.1k
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Fixing Up Read Quality: Trimming First Or Filtering First?
reads trimming filtering qualitycontrol written 7.2 years ago by seraphya • 0 • updated 7.2 years ago by Rohit • 1.4k
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5 follow
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What Is Best Strategy To Use Miseq 2X300 Reads To Improve De Novo Transcriptome Assembly Based On Hiseq 2X100 Reads?
illumina hiseq miseq qualitycontrol written 7.3 years ago by lzwright • 150
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Calculate Aligment Metrics For Ngs Data (Zero Mismatches And Uniquely Mappable Reads)
ngs alignment qualitycontrol written 7.3 years ago by User6891 • 290 • updated 7.3 years ago by Ashutosh Pandey ♦ 12k
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5.8k
views
2
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Interpreting Flagstat Output
tophat2 alignment samtools qualitycontrol written 7.3 years ago by roll • 330 • updated 7.3 years ago by swbarnes2 ♦ 9.3k
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5 follow
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How To Visualize The Quality Of Sequencing Data In Colorspace (Solid) Format?
read qualitycontrol written 7.3 years ago by Roger • 0 • updated 7.3 years ago by Istvan Albert ♦♦ 86k
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7 follow
3
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Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 7.6 years ago by venks • 720 • updated 7.5 years ago by rob234king • 600
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Fastx-Toolkit -- More Extensive Reference
fastx qualitycontrol written 7.5 years ago by malherbologist • 0
6
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2
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3.6k
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What Do You Expect As The False Positive And Negative Rate For Snp'S And Indels In Wgs?
indel genotype snp qualitycontrol written 7.5 years ago by William • 4.7k • updated 7.5 years ago by Vitis • 2.4k
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3
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How To Call Snp And Indel Based On A Sanger Sequences Based Bac Contig Vs Reference?
indel sanger snp qualitycontrol written 7.6 years ago by William • 4.7k
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3.9k
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What Figure You Make For Qc Of Whole Exome Sequencing Data
exome qualitycontrol written 7.7 years ago by User 1933 • 340 • updated 7.7 years ago by Sean Davis ♦ 26k
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What Kind Of Analysis And Visualization Methods Would One Use For Checking The Quality Of Rna Seq Count Data?
quality rna rna-seq qualitycontrol written 7.8 years ago by k.nirmalraman • 1.0k • updated 7.8 years ago by epistatic • 180
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Whole Genome Dna Amplification Before Applying Wgs
indel ngs dna snp qualitycontrol written 7.8 years ago by Thomas • 730 • updated 7.8 years ago by Chris Miller ♦ 21k
47
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13 follow
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Tutorial: Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
tutorial fastqc qualitycontrol written 7.9 years ago by Istvan Albert ♦♦ 86k • updated 7.9 years ago by assafgordon • 140
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4.5k
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Fastq Quality Filter Parameters
ngs fastq qualitycontrol written 7.9 years ago by madbessoul • 220 • updated 7.9 years ago by Istvan Albert ♦♦ 86k
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