Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 26 results • page 1 of 1 • next >
2
votes
1
answer
504
views
1
answer
Many 35nt reads with N bases in R1(paired-end) when sequencing with Illumina NextSeq
illumina rna-seq qualitycontrol written 16 months ago by mgdrnl • 10 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
753
views
0
answers
RNAseq paper with good data overview (quality, stats) figures?
visualization statgraphs rna-seq qualitycontrol written 4.7 years ago by Mamta • 450
0
votes
2
answers
1.8k
views
2
answers
Quality Control For Cnv Calling
genotyping cnv qualitycontrol written 6.6 years ago by Astoulpho • 10 • updated 5.1 years ago by jglessnd • 20
3
votes
1
answer
3.3k
views
1
answer
Estimating Empirical Error Rate In Illumina Sequencing Data
illumina quality ngs qualitycontrol written 7.4 years ago by Abhi • 1.5k • updated 5.8 years ago by Biostar ♦♦ 20
28
votes
2
answers
19k
views
20 follow
2
answers
Tutorial: So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
tutorial fastqc qualitycontrol written 6.8 years ago by Istvan Albert ♦♦ 84k
0
votes
1
answer
1.3k
views
1
answer
How To Check Quality Of Snps
filter snp qualitycontrol written 6.5 years ago by roll • 320 • updated 6.5 years ago by Zev.Kronenberg ♦ 11k
1
vote
1
answer
3.9k
views
1
answer
Ngs-Qc-Per Base Sequence Content Failed
illumina qualitycontrol fastqc written 6.5 years ago by williamjohn360 • 90 • updated 6.5 years ago by Sean Davis ♦ 26k
2
votes
1
answer
2.5k
views
1
answer
Ngs-Qc & K-Mer
qualitycontrol written 6.5 years ago by williamjohn360 • 90 • updated 6.5 years ago by jackuser1979 • 870
1
vote
0
answers
5.8k
views
0
answers
Java Error "Concurrent.Executionexception" While Running Trimmomatic V0.32
java qualitycontrol written 6.6 years ago by arnstrm • 1.8k
0
votes
0
answers
3.0k
views
0
answers
How To Check The Concordance Of Genotypes In Duplicate Samples In Bed And Ped Formats (Produced Via Plink)
duplicates snps genotype qualitycontrol written 6.7 years ago by snp_cook12 • 0 • updated 6.7 years ago by Istvan Albert ♦♦ 84k
2
votes
1
answer
2.0k
views
1
answer
Set Genotype Of Specific Sample/Genotype Comb To Unknown In Multisample Vcf File
vcf qualitycontrol written 6.7 years ago by Maarten • 0 • updated 6.7 years ago by Pierre Lindenbaum ♦ 129k
6
votes
3
answers
3.9k
views
6 follow
3
answers
What Are The Best Qc Tools For Exome Seq, Rna Seq, Single/Paired End, Etc?
sequencing pipeline qualitycontrol written 6.8 years ago by bw. • 150 • updated 6.8 years ago by Michele Busby • 2.1k
0
votes
2
answers
2.3k
views
2
answers
Fixing Up Read Quality: Trimming First Or Filtering First?
reads trimming filtering qualitycontrol written 6.8 years ago by seraphya • 0 • updated 6.8 years ago by Rohit • 1.4k
7
votes
1
answer
5.4k
views
5 follow
1
answer
What Is Best Strategy To Use Miseq 2X300 Reads To Improve De Novo Transcriptome Assembly Based On Hiseq 2X100 Reads?
illumina hiseq miseq qualitycontrol written 6.8 years ago by lzwright • 150
0
votes
1
answer
2.0k
views
1
answer
Calculate Aligment Metrics For Ngs Data (Zero Mismatches And Uniquely Mappable Reads)
ngs alignment qualitycontrol written 6.8 years ago by User6891 • 270 • updated 6.8 years ago by Ashutosh Pandey ♦ 12k
2
votes
2
answers
5.5k
views
2
answers
Interpreting Flagstat Output
tophat2 alignment samtools qualitycontrol written 6.9 years ago by roll • 320 • updated 6.8 years ago by swbarnes2 ♦ 8.1k
2
votes
1
answer
2.6k
views
5 follow
1
answer
How To Visualize The Quality Of Sequencing Data In Colorspace (Solid) Format?
read qualitycontrol written 6.9 years ago by Roger • 0 • updated 6.9 years ago by Istvan Albert ♦♦ 84k
20
votes
3
answers
6.4k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 7.2 years ago by venks • 710 • updated 7.0 years ago by rob234king • 600
1
vote
0
answers
2.6k
views
0
answers
Fastx-Toolkit -- More Extensive Reference
fastx qualitycontrol written 7.0 years ago by malherbologist • 0
6
votes
2
answers
3.5k
views
2
answers
What Do You Expect As The False Positive And Negative Rate For Snp'S And Indels In Wgs?
indel genotype snp qualitycontrol written 7.0 years ago by William • 4.7k • updated 7.0 years ago by Vitis • 2.4k
4
votes
3
answers
4.0k
views
3
answers
How To Call Snp And Indel Based On A Sanger Sequences Based Bac Contig Vs Reference?
indel sanger snp qualitycontrol written 7.1 years ago by William • 4.7k
5
votes
1
answer
3.7k
views
1
answer
What Figure You Make For Qc Of Whole Exome Sequencing Data
exome qualitycontrol written 7.3 years ago by User 1933 • 340 • updated 7.3 years ago by Sean Davis ♦ 26k
0
votes
1
answer
1.8k
views
1
answer
What Kind Of Analysis And Visualization Methods Would One Use For Checking The Quality Of Rna Seq Count Data?
quality rna rna-seq qualitycontrol written 7.3 years ago by k.nirmalraman • 1.0k • updated 7.3 years ago by epistatic • 180
7
votes
3
answers
3.4k
views
3
answers
Whole Genome Dna Amplification Before Applying Wgs
indel ngs dna snp qualitycontrol written 7.4 years ago by Thomas • 730 • updated 7.4 years ago by Chris Miller ♦ 21k
47
votes
1
answer
10k
views
13 follow
1
answer
Tutorial: Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
tutorial fastqc qualitycontrol written 7.4 years ago by Istvan Albert ♦♦ 84k • updated 7.4 years ago by assafgordon • 140
0
votes
1
answer
4.2k
views
1
answer
Fastq Quality Filter Parameters
ngs fastq qualitycontrol written 7.5 years ago by madbessoul • 210 • updated 7.5 years ago by Istvan Albert ♦♦ 84k
<prev • 26 results • page 1 of 1 • next >
Recent Votes
Recent Locations • All »
  • London, UK, 1 minute ago
  • University of Maryland, 3 minutes ago
  • Potsdam, Germay, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1363 users visited in the last hour