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Comment: Intersect multiple BED files
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Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
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Recent Replies
Comment: Help for coding: Trinity for differential gene expression studies
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rhossen
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It should be great if I have any assistance in my build up command using trinity package...
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
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I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
Answer: Help for coding: Trinity for differential gene expression studies
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Hello, I would recommend following RSEM wiki for more information about the options, or even run RSEM directly, not with the script provi…
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This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
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this is names.dmp:![names.dmp][1] and nodes.dmp![nodes.dmp][2] [1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185 [2]: /media/i…
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
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Pierre Lindenbaum
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see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
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Pierre Lindenbaum
161k
what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
Comment: interpretartion of a vcf file
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Pierre Lindenbaum
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yes if there is more than one sample genotyped.
Comment: interpretartion of a vcf file
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samuelkalandarov2002
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Is it typical to observe such a profile in the context of diploid organism ?
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Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
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This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
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Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1]. Then follow …
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let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
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how is this query itself originating?
Comment: Redirection of Duplicate PMIDs
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dominickd
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I was able to come up with a workaround using the requests library: import requests pmid = 30134295 url = 'https://pubmed.ncbi…
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