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written 24 days ago by
carlopecoraro2 • 840
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RamRS ♦ 20k
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ATpoint ♦ 13k
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written 16 months ago by
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Istvan Albert ♦♦ 79k
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21 months ago by
h.mon ♦ 23k
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William • 4.4k
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written 2.1 years ago by
beausoleilmo • 230
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2.1 years ago by
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Recent Replies
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C: samtools filter proper paired alignment by
ATpoint ♦ 13k
`BWA mem` alignments? If so see https://www.biostars.org/p/319966/
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C: How to interpret Bayesian network for selected genes by
afli • 160
hello, how can I learn the probabilistic modeling of gene expression? Thank you!
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C: Command line tool for translated multifasta nucleotide to aminoacid sequence by
rmf • 540
It keeps the fasta headers but seems to do some cleaning. In my case, commas (,) were converted t...
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C: VCF file filtration by
Kevin Blighe ♦ 37k
Cool. For that, I recommend `bcftools view`, with the following option: -q/Q, --min-af/--max...
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C: VCF file filtration by
jaafari.omid • 10
I meant my own data set, filtering my reads on vcf file based on MAF.
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C: VCF file filtration by
Kevin Blighe ♦ 37k
Do you mean the MAF in your own dataset or the MAFs from the large consortia, like 1000 Genomes?
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C: DEseq three-group comparison by
Kevin Blighe ♦ 37k
Oh, no problem.
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C: New to Whole Exome Sequencing and Manhattan Plot and I need to understand how to by
Kevin Blighe ♦ 37k
Ahora será mejor abrir una nueva pregunta. En la nueva pregunta, relata sobre lo que ya has hecho...
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C: New to Whole Exome Sequencing and Manhattan Plot and I need to understand how to by
Kevin Blighe ♦ 37k
> By Not answering my question you just pushed me to do better and take > this as a challen...
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C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by
Kevin Blighe ♦ 37k
I doubt that many will respond as you have not made it easy for anyone. We just want to see the c...
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C: How to get proteins from GFF file resulted from MAKER annotation by
jean.elbers • 510
I don’t know about the stop codons. I guess it depends what seqtk does when parsing the * . I wo...
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C: New to Whole Exome Sequencing and Manhattan Plot and I need to understand how to by
Kevin Blighe ♦ 37k
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