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Forum: Workstation : More RAM or Faster RAM

forum ram configuration workstation written 12 days ago by venuraherath • 10 • updated 12 days ago by Eli Korvigo • 130

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"Optimal" setting of CPU and max_memory in Trinity

trinity ram cpu written 21 months ago by al-ash • 50 • updated 18 months ago by euduca • 0

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2.3k

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memory consumption of bwa-mem

bwa-mem ram mapping memory written 19 months ago by Lars • 580 • updated 19 months ago by d-cameron • 1.9k

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656

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Whole exomes: Rsamtools, RAM issue

R ram rsamtools bam whole exome written 20 months ago by bioinfo8 • 90

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1.4k

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Local blast memory usage

ram blast written 2.2 years ago by haylogo • 20

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904

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Pacbio assembler for mid genome ?

ram cpu written 2.5 years ago by Picasa • 380

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1.4k

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Where are the different RAM versions of IGB in v8.3.0

mac ram igb written 3.7 years ago by Chris Cole • 670 • updated 3.7 years ago by dcnorris • 270

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Preview temporary outputfile blast

ram blast written 4.2 years ago by sara • 0

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918

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RAM limitation on trinity using DIAG computational resource

diag ram rna-seq written 4.2 years ago by sckinta • 480

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Recent Replies

C: How to convert .cel to .fastq for miRNA analysis? by genomax ♦ 57k
`.cel` files likely refer to miRNA data that was obtained from a microarray. You can't convert th...
C: How to convert .cel to .fastq for miRNA analysis? by cpad0112 • 9.4k
.cel files are affymetrix array file and .fastq are from sequencing as I understand. Look at the ...
C: R package to extract fasta sequence using gene names by cpad0112 • 9.4k
Using R for such a task is over kill IMO. Use seqtk or seqkit or fasomerecords or grep (if you ha...
A: RNA-SeQC error shortly after start by wbliu • 0
Thanks RamRS! I will ask them to check it.
C: The size of the genome in pb of an organism before sequencing? by genomax ♦ 57k
You may need to do a bit of sequencing to estimate that. Then you can follow the tutorials [here]...
C: The size of the genome in pb of an organism before sequencing? by ismaelrg21 • 0
Yeah, sorry I was referring to bp.
C: The size of the genome in pb of an organism before sequencing? by WouterDeCoster ♦ 32k
> pb I don't know what pb means, but I assume you mean bp.
C: The size of the genome in pb of an organism before sequencing? by ATpoint ♦ 8.2k
Please elaborate. You have an organism of which you do not know the genome size, right? What kind...
C: SPAdes output with assembling warning by jrj.healey ♦ 7.7k
Sorry, my mistake. I meant Qualimap, not Quast.
C: no gene_id for tRNA in GFF3 by lieven.sterck • 2.6k
you're welcome! if this has resolved your issue would you mind flagging this one as 'solved'? (p...
C: Is it fair to compare 2x75 bp and 2x150 bp exome performances after downsampling by pegeot.henri • 0
To give more context I work in an hospital and I am looking for the most performant sequencing ki...
C: How To Write Data In A Granges Object To A Bed File. by eric.kern13 • 100
Your link currently gives this thread as the first hit. Profit indeed.

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