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<prev • 144 results • page 1 of 5 • next >
1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 19 days ago by c.clarido • 30
1
vote
0
answers
660
views
0
answers
Showing the original subject when running BLAST
command read alignment blast dna written 2.7 years ago by kdsilva • 0 • updated 29 days ago by RamRS ♦ 18k
6
votes
1
answer
197
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6 follow
1
answer
Finding some specific SNPs in aligned sam file
sam file read snp written 8 weeks ago by hasani.iut6 • 30 • updated 8 weeks ago by b.nota ♦ 5.0k
9
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4
answers
929
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4
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Cases where indexing is efficient for read retrieval
read fastq speed database index written 3.3 years ago by blaise.li__biostars • 50 • updated 12 weeks ago by Biostar ♦♦ 20
2
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3
answers
4.1k
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5 follow
3
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Does Bam File Include Unmapped Reads As Well?
read bam mapping written 5.6 years ago by Jordan • 1.0k • updated 3 months ago by ammar.husami • 0
9
votes
1
answer
951
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8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 21 months ago by pmarijon • 110
1
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0
answers
209
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0
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Normalization of read counts
read counts written 5 months ago by dllopezr • 30
5
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2
answers
273
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2
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How to check if a read in a SAM file contains substitutions
read bam sam c++ written 7 months ago by omariqbal2017 • 0 • updated 7 months ago by d-cameron • 1.9k
6
votes
1
answer
245
views
1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 7 months ago by Aleksandra • 0 • updated 7 months ago by grant.hovhannisyan • 1.1k
2
votes
1
answer
406
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5 follow
1
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is there any fast and accurate read mapper which provides and easy-to-use API?
read alignment written 8 months ago by Ameerosein • 70 • updated 8 months ago by Pierre Lindenbaum ♦ 113k
32
votes
3
answers
13k
views
16 follow
3
answers
Forward Strand Or Reverse Strand
read strand written 5.8 years ago by siyu • 130 • updated 10 months ago by h.mon ♦ 20k
4
votes
1
answer
437
views
1
answer
CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 10 months ago by Macspider • 2.6k • updated 10 months ago by h.mon ♦ 20k
2
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0
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480
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6 follow
0
answers
How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 10 months ago by prototommaso • 0
2
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2
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1.6k
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2
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What Do Marked Reads Mean In An Xsq File?
read solid written 5.7 years ago by Jordan • 1.0k • updated 11 months ago by Biostar ♦♦ 20
27
votes
2
answers
6.7k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 4.3 years ago by Malachi Griffith ♦ 16k • updated 11 months ago by anu014 • 150
0
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0
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316
views
0
answers
count of reads having multiple references
read alignment multiple references written 12 months ago by haro • 230
0
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0
answers
441
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0
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Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 13 months ago by O.rka • 60
6
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2
answers
3.0k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 7.1 years ago by Abhi • 1.5k • updated 13 months ago by Biostar ♦♦ 20
0
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0
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1.1k
views
0
answers
FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 17 months ago by seta • 1.0k
0
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2
answers
613
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5 follow
2
answers
Modification of fastq header
read fastq header modification written 18 months ago by seta • 1.0k • updated 18 months ago by Charles Plessy • 2.5k
4
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2
answers
1.0k
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 19 months ago by xd_d • 90 • updated 19 months ago by d-cameron • 1.9k
3
votes
3
answers
5.9k
views
7 follow
3
answers
Remove Duplicate Reads From Fasta File
fasta read written 6.1 years ago by deepthithomaskannan • 230 • updated 20 months ago by Eslam Samir • 100
0
votes
0
answers
609
views
0
answers
How to identify read depth from maf files?
maf read sequencing depth written 21 months ago by omd • 10
1
vote
1
answer
633
views
1
answer
how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 21 months ago by Ameerosein • 70 • updated 21 months ago by mforde84 • 1.2k
2
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2
answers
1.1k
views
2
answers
Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 3.0 years ago by a.s.c • 0 • updated 22 months ago by Biostar ♦♦ 20
19
votes
2
answers
12k
views
9 follow
2
answers
What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 7.7 years ago by Chronos • 550 • updated 23 months ago by anderspitman • 50
3
votes
1
answer
1.9k
views
1
answer
Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 4.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.4 years ago by Biostar ♦♦ 20
7
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1
answer
2.8k
views
1
answer
Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 2.5 years ago by dovah • 30 • updated 2.5 years ago by Devon Ryan ♦ 85k
2
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0
answers
2.3k
views
0
answers
Reads, Cluster Numbers, Study Design Comparison
read cluster number written 2.7 years ago by carabiniero8 • 10
0
votes
1
answer
1.0k
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1
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How many reads used by a assembler for transcriptome assembly
read rna-seq transcriptome assembly written 2.9 years ago by seta • 1.0k • updated 2.9 years ago by Antonio R. Franco • 3.9k
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