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<prev • 134 results • page 1 of 5 • next >
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FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 10 weeks ago by seta • 900
23
votes
3
answers
9.0k
views
12 follow
3
answers
Forward Stand Or Reverse Strand
read strand written 4.6 years ago by siyu • 100 • updated 12 weeks ago by liangqinsi • 20
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2
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183
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5 follow
2
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Modification of fastq header
read fastq header modification written 3 months ago by seta • 900 • updated 3 months ago by Charles Plessy • 2.1k
1
vote
2
answers
222
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6 follow
2
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NGS overlapping reads
read ngs alignment read-depth rna-seq written 4 months ago by xd_d • 50 • updated 4 months ago by d-cameron • 740
3
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3
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4.3k
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7 follow
3
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Remove Duplicate Reads From Fasta File
fasta read written 4.8 years ago by deepthithomaskannan • 190 • updated 5 months ago by Eslam Samir • 90
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0
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243
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0
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How to identify read depth from maf files?
maf read sequencing depth written 5 months ago by omd • 10
3
votes
1
answer
365
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6 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 5 months ago by pmarijon • 30 • updated 5 months ago by Brian Bushnell ♦ 13k
1
vote
1
answer
274
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1
answer
how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 6 months ago by Ameerosein • 70 • updated 6 months ago by mforde84 • 700
2
votes
2
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616
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2
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Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 21 months ago by a.s.c • 0 • updated 7 months ago by Biostar ♦♦ 20
13
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2
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8.2k
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6 follow
2
answers
What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 6.5 years ago by Chronos • 480 • updated 7 months ago by anderspitman • 20
3
votes
1
answer
1.4k
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1
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Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 3.0 years ago by QVINTVS_FABIVS_MAXIMVS • 1.9k • updated 13 months ago by Biostar ♦♦ 20
5
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1
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1.5k
views
1
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Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 14 months ago by dovah • 30 • updated 14 months ago by Devon Ryan ♦ 69k
1
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0
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361
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0
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Showing the original subject when running BLAST
command read alignment blast dna written 17 months ago by kdsilva • 0
2
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0
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845
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0
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Reads, Cluster Numbers, Study Design Comparison
read cluster number written 17 months ago by carabiniero8 • 10
0
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1
answer
674
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1
answer
How many reads used by a assembler for transcriptome assembly
read rna-seq transcriptome assembly written 19 months ago by seta • 900 • updated 19 months ago by Antonio R. Franco • 3.3k
18
votes
4
answers
2.4k
views
7 follow
4
answers
Help Me Understand Why So Many Reads Do Not Align!
read tophat alignment written 6.3 years ago by Pfs • 30 • updated 21 months ago by Biostar ♦♦ 20
10
votes
3
answers
1.5k
views
3
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How to confirm forward primer matches each read without removing primer sequence?
read filtering sequencing written 21 months ago by gavinmdouglas • 10 • updated 21 months ago by ashwini • 90
8
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4
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595
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4
answers
Cases where indexing is efficient for read retrieval
read fastq speed database index written 2.0 years ago by blaise.li__biostars • 30 • updated 2.0 years ago by Alex Reynolds ♦ 19k
5
votes
1
answer
1.4k
views
1
answer
the defination of insert size in RNA-seq, including the length of read, or not?
inner_distance read rna-seq insert_size written 2.1 years ago by zju.whw • 30
3
votes
2
answers
862
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2
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What does this mean in my read (samtools)
read ngs samtools wgs written 2.1 years ago by QVINTVS_FABIVS_MAXIMVS • 1.9k • updated 2.1 years ago by Pierre Lindenbaum ♦ 96k
10
votes
3
answers
2.8k
views
5 follow
3
answers
Paired End Vs Single End Detection
perl illumina paired-end read written 5.2 years ago by Lee Katz • 2.8k • updated 2.5 years ago by Brian Bushnell ♦ 13k
5
votes
2
answers
2.7k
views
2
answers
Should I merge forward and reverse reads before mapping
genome illumina sequencing mapping read written 2.6 years ago by qiyunzhu • 120 • updated 2.6 years ago by epistatic • 160
4
votes
0
answers
801
views
0
answers
reads mapped in proper pair (99/147) but mapq=0 ?
read bam mapq written 2.6 years ago by Pierre Lindenbaum ♦ 96k
2
votes
1
answer
1.5k
views
1
answer
Metagenomic read recruitment: best software
software read metagenomics recruitment written 2.8 years ago by fhsantanna • 290
1
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2
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1.0k
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2
answers
Where Can I Download Some Short Dna Reads That Only Contains Snps?
short read dna seq written 3.7 years ago by Sami Salami • 0 • updated 3.0 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.5k
views
1
answer
Fastq file and Fa file,How to create?
read fastq sequence written 3.0 years ago by jafarzadeh91 • 0 • updated 3.0 years ago by Devon Ryan ♦ 69k
6
votes
1
answer
1.8k
views
6 follow
1
answer
Filtration Of Reads With Length Lower Than 30 From Bam
read length bam written 3.4 years ago by filipzembol • 90 • updated 3.0 years ago by Biostar ♦♦ 20
18
votes
1
answer
6.0k
views
5 follow
1
answer
What is the difference between a Read and a Fragment in RNA-seq?
read sequencing fragment rna-seq insert written 3.0 years ago by M K • 290 • updated 3.0 years ago by Malachi Griffith ♦ 15k
11
votes
1
answer
1.8k
views
9 follow
1
answer
Bio.Phylo.Paml.Codeml'S Results Parser Quietly Fails To Read All The Data
python parser biopython codeml read written 3.6 years ago by a1ultima • 600 • updated 3.1 years ago by Biostar ♦♦ 20
24
votes
1
answer
5.4k
views
14 follow
1
answer
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 3.1 years ago by Malachi Griffith ♦ 15k
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