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<prev • 142 results • page 1 of 5 • next >
9
votes
4
answers
870
views
4
answers
Cases where indexing is efficient for read retrieval
read fastq speed database index written 3.1 years ago by blaise.li__biostars • 40 • updated 23 days ago by Biostar ♦♦ 20
2
votes
3
answers
3.9k
views
5 follow
3
answers
Does Bam File Include Unmapped Reads As Well?
read bam mapping written 5.4 years ago by Jordan • 1.0k • updated 5 weeks ago by ammar.husami • 0
9
votes
1
answer
843
views
8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 18 months ago by pmarijon • 110
1
vote
0
answers
178
views
0
answers
Normalization of read counts
read counts written 3 months ago by dllopezr • 20
5
votes
2
answers
205
views
2
answers
How to check if a read in a SAM file contains substitutions
read bam sam c++ written 4 months ago by omariqbal2017 • 0 • updated 4 months ago by d-cameron • 1.9k
6
votes
1
answer
204
views
1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 5 months ago by Aleksandra • 0 • updated 5 months ago by grant.hovhannisyan • 950
2
votes
1
answer
326
views
5 follow
1
answer
is there any fast and accurate read mapper which provides and easy-to-use API?
read alignment written 5 months ago by Ameerosein • 70 • updated 5 months ago by Pierre Lindenbaum ♦ 111k
30
votes
3
answers
13k
views
16 follow
3
answers
Forward Strand Or Reverse Strand
read strand written 5.7 years ago by siyu • 120 • updated 8 months ago by h.mon ♦ 18k
4
votes
1
answer
364
views
1
answer
CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 8 months ago by Macspider • 2.5k • updated 8 months ago by h.mon ♦ 18k
2
votes
0
answers
405
views
6 follow
0
answers
How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 8 months ago by prototommaso • 0
2
votes
2
answers
1.6k
views
2
answers
What Do Marked Reads Mean In An Xsq File?
read solid written 5.5 years ago by Jordan • 1.0k • updated 9 months ago by Biostar ♦♦ 20
27
votes
2
answers
6.6k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 4.2 years ago by Malachi Griffith ♦ 16k • updated 9 months ago by anu014 • 150
0
votes
0
answers
280
views
0
answers
count of reads having multiple references
read alignment multiple references written 10 months ago by haro • 230
0
votes
0
answers
398
views
0
answers
Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 11 months ago by O.rka • 50
6
votes
2
answers
3.0k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 6.9 years ago by Abhi • 1.5k • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
1.0k
views
0
answers
FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 15 months ago by seta • 1000
0
votes
2
answers
502
views
5 follow
2
answers
Modification of fastq header
read fastq header modification written 16 months ago by seta • 1000 • updated 16 months ago by Charles Plessy • 2.5k
4
votes
2
answers
759
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 17 months ago by xd_d • 90 • updated 17 months ago by d-cameron • 1.9k
3
votes
3
answers
5.7k
views
7 follow
3
answers
Remove Duplicate Reads From Fasta File
fasta read written 5.9 years ago by deepthithomaskannan • 230 • updated 18 months ago by Eslam Samir • 100
0
votes
0
answers
565
views
0
answers
How to identify read depth from maf files?
maf read sequencing depth written 18 months ago by omd • 10
1
vote
1
answer
582
views
1
answer
how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 19 months ago by Ameerosein • 70 • updated 19 months ago by mforde84 • 1.2k
2
votes
2
answers
1.0k
views
2
answers
Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 2.8 years ago by a.s.c • 0 • updated 19 months ago by Biostar ♦♦ 20
17
votes
2
answers
11k
views
7 follow
2
answers
What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 7.5 years ago by Chronos • 530 • updated 20 months ago by anderspitman • 40
3
votes
1
answer
1.8k
views
1
answer
Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 4.1 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.2 years ago by Biostar ♦♦ 20
7
votes
1
answer
2.6k
views
1
answer
Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 2.3 years ago by dovah • 30 • updated 2.3 years ago by Devon Ryan ♦ 82k
1
vote
0
answers
613
views
0
answers
Showing the original subject when running BLAST
command read alignment blast dna written 2.5 years ago by kdsilva • 0
2
votes
0
answers
2.0k
views
0
answers
Reads, Cluster Numbers, Study Design Comparison
read cluster number written 2.5 years ago by carabiniero8 • 10
0
votes
1
answer
1.0k
views
1
answer
How many reads used by a assembler for transcriptome assembly
read rna-seq transcriptome assembly written 2.7 years ago by seta • 1000 • updated 2.7 years ago by Antonio R. Franco • 3.7k
18
votes
4
answers
3.1k
views
7 follow
4
answers
Help Me Understand Why So Many Reads Do Not Align!
read tophat alignment written 7.4 years ago by Pfs • 30 • updated 2.8 years ago by Biostar ♦♦ 20
10
votes
3
answers
2.2k
views
3
answers
How to confirm forward primer matches each read without removing primer sequence?
read filtering sequencing written 2.8 years ago by gavinmdouglas • 10 • updated 2.8 years ago by ashwini • 90
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