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<prev • 142 results • page 1 of 5 • next >
9
votes
1
answer
767
views
8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 17 months ago by pmarijon • 110
1
vote
0
answers
136
views
0
answers
Normalization of read counts
read counts written 5 weeks ago by dllopezr • 10
5
votes
2
answers
167
views
2
answers
How to check if a read in a SAM file contains substitutions
read bam sam c++ written 3 months ago by omariqbal2017 • 0 • updated 3 months ago by d-cameron • 1.8k
6
votes
1
answer
177
views
1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 3 months ago by Aleksandra • 0 • updated 3 months ago by grant.hovhannisyan • 880
2
votes
1
answer
259
views
5 follow
1
answer
is there any fast and accurate read mapper which provides and easy-to-use API?
read alignment written 4 months ago by Ameerosein • 70 • updated 4 months ago by Pierre Lindenbaum ♦ 108k
30
votes
3
answers
12k
views
16 follow
3
answers
Forward Strand Or Reverse Strand
read strand written 5.5 years ago by siyu • 120 • updated 6 months ago by h.mon ♦ 15k
4
votes
1
answer
301
views
1
answer
CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 6 months ago by Macspider • 2.4k • updated 6 months ago by h.mon ♦ 15k
2
votes
0
answers
349
views
6 follow
0
answers
How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 6 months ago by prototommaso • 0
2
votes
2
answers
1.5k
views
2
answers
What Do Marked Reads Mean In An Xsq File?
read solid written 5.4 years ago by Jordan • 1.0k • updated 7 months ago by Biostar ♦♦ 20
27
votes
2
answers
6.4k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 4.0 years ago by Malachi Griffith ♦ 16k • updated 7 months ago by anu014 • 150
0
votes
0
answers
238
views
0
answers
count of reads having multiple references
read alignment multiple references written 8 months ago by haro • 220
0
votes
0
answers
364
views
0
answers
Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 9 months ago by O.rka • 40
6
votes
2
answers
2.9k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 6.7 years ago by Abhi • 1.5k • updated 9 months ago by Biostar ♦♦ 20
0
votes
0
answers
905
views
0
answers
FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 13 months ago by seta • 990
0
votes
2
answers
439
views
5 follow
2
answers
Modification of fastq header
read fastq header modification written 14 months ago by seta • 990 • updated 14 months ago by Charles Plessy • 2.5k
4
votes
2
answers
665
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 15 months ago by xd_d • 90 • updated 15 months ago by d-cameron • 1.8k
3
votes
3
answers
5.5k
views
7 follow
3
answers
Remove Duplicate Reads From Fasta File
fasta read written 5.7 years ago by deepthithomaskannan • 210 • updated 16 months ago by Eslam Samir • 100
0
votes
0
answers
529
views
0
answers
How to identify read depth from maf files?
maf read sequencing depth written 16 months ago by omd • 10
1
vote
1
answer
525
views
1
answer
how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 17 months ago by Ameerosein • 70 • updated 17 months ago by mforde84 • 1.1k
2
votes
2
answers
940
views
2
answers
Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 2.7 years ago by a.s.c • 0 • updated 18 months ago by Biostar ♦♦ 20
17
votes
2
answers
11k
views
7 follow
2
answers
What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 7.4 years ago by Chronos • 530 • updated 19 months ago by anderspitman • 40
3
votes
1
answer
1.8k
views
1
answer
Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 3.9 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.0 years ago by Biostar ♦♦ 20
7
votes
1
answer
2.5k
views
1
answer
Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 2.1 years ago by dovah • 30 • updated 2.1 years ago by Devon Ryan ♦ 81k
1
vote
0
answers
590
views
0
answers
Showing the original subject when running BLAST
command read alignment blast dna written 2.3 years ago by kdsilva • 0
2
votes
0
answers
1.9k
views
0
answers
Reads, Cluster Numbers, Study Design Comparison
read cluster number written 2.4 years ago by carabiniero8 • 10
0
votes
1
answer
964
views
1
answer
How many reads used by a assembler for transcriptome assembly
read rna-seq transcriptome assembly written 2.5 years ago by seta • 990 • updated 2.5 years ago by Antonio R. Franco • 3.7k
18
votes
4
answers
3.0k
views
7 follow
4
answers
Help Me Understand Why So Many Reads Do Not Align!
read tophat alignment written 7.2 years ago by Pfs • 30 • updated 2.6 years ago by Biostar ♦♦ 20
10
votes
3
answers
2.1k
views
3
answers
How to confirm forward primer matches each read without removing primer sequence?
read filtering sequencing written 2.6 years ago by gavinmdouglas • 10 • updated 2.6 years ago by ashwini • 90
9
votes
4
answers
802
views
4
answers
Cases where indexing is efficient for read retrieval
read fastq speed database index written 2.9 years ago by blaise.li__biostars • 40 • updated 2.9 years ago by Alex Reynolds ♦ 24k
5
votes
1
answer
1.9k
views
1
answer
the defination of insert size in RNA-seq, including the length of read, or not?
inner_distance read rna-seq insert_size written 3.0 years ago by zju.whw • 30
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