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<prev • 146 results • page 1 of 5 • next >
0
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121
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Problem to Read my file : infinite loop
python infinite loop file read written 8 days ago by amandinelecerfdefer • 10 • updated 8 days ago by WouterDeCoster ♦ 39k
4
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2
answers
764
views
2
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 18 months ago by Macspider • 2.8k • updated 7 weeks ago by shouldsee.gem • 0
1
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1
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226
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 11 weeks ago by nute11a • 0 • updated 11 weeks ago by Istvan Albert ♦♦ 80k
4
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1
answer
512
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1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 8 months ago by c.clarido • 50 • updated 7 months ago by Biostar ♦♦ 20
2
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1
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644
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5 follow
1
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is there any fast and accurate read mapper which provides an easy-to-use API?
read alignment written 16 months ago by Amirosein • 70
1
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0
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798
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Showing the original subject when running BLAST
command read alignment blast dna written 3.3 years ago by kdsilva • 0 • updated 9 months ago by RamRS ♦ 22k
6
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1
answer
504
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6 follow
1
answer
Finding some specific SNPs in aligned sam file
sam file read snp written 10 months ago by hasani.iut6 • 40 • updated 10 months ago by Benn ♦ 6.9k
9
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4
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1.1k
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4
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Cases where indexing is efficient for read retrieval
read fastq speed database index written 3.9 years ago by blaise.li__biostars • 50 • updated 11 months ago by Biostar ♦♦ 20
2
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3
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4.8k
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5 follow
3
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Does Bam File Include Unmapped Reads As Well?
read bam mapping written 6.3 years ago by Jordan • 1.1k • updated 11 months ago by ammar.husami • 0
10
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1
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1.3k
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8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 2.4 years ago by pmarijon • 120
1
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0
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329
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0
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Normalization of read counts
read counts written 13 months ago by dllopezr • 40
5
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2
answers
464
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2
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How to check if a read in a SAM file contains substitutions
read bam sam c++ written 15 months ago by omariqbal2017 • 0 • updated 15 months ago by d-cameron • 2.0k
6
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1
answer
424
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1
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Does each read in a BAM file have approximately the same size?
read bam size written 16 months ago by Aleksandra • 0 • updated 16 months ago by grant.hovhannisyan • 1.6k
33
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3
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16k
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16 follow
3
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Forward Strand Or Reverse Strand
read strand written 6.5 years ago by siyu • 130 • updated 18 months ago by h.mon ♦ 26k
2
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0
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732
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6 follow
0
answers
How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 18 months ago by prototommaso • 0
2
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2
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1.8k
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2
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What Do Marked Reads Mean In An Xsq File?
read solid written 6.4 years ago by Jordan • 1.1k • updated 19 months ago by Biostar ♦♦ 20
27
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2
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7.3k
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19 follow
2
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Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 5.0 years ago by Malachi Griffith ♦ 17k • updated 19 months ago by anu014 • 160
0
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0
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452
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0
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count of reads having multiple references
read alignment multiple references written 20 months ago by vmicrobio • 240
0
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0
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594
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0
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Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 21 months ago by O.rka • 110
6
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2
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3.3k
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2
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Tracking Reads/Contigs In Velvet
read velvet written 7.7 years ago by Abhi • 1.5k • updated 21 months ago by Biostar ♦♦ 20
0
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0
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1.6k
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0
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FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 2.1 years ago by seta • 1.2k
0
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2
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930
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5 follow
2
answers
Modification of fastq header
read fastq header modification written 2.2 years ago by seta • 1.2k • updated 2.2 years ago by Charles Plessy • 2.7k
4
votes
2
answers
1.6k
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 2.3 years ago by xd_d • 90 • updated 2.3 years ago by d-cameron • 2.0k
4
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3
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6.7k
views
7 follow
3
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Remove Duplicate Reads From Fasta File
fasta read written 6.7 years ago by deepthithomaskannan • 260 • updated 2.3 years ago by Eslam Samir • 100
0
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0
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780
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0
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How to identify read depth from maf files?
maf read sequencing depth written 2.4 years ago by omd • 10
1
vote
1
answer
814
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1
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how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 2.5 years ago by Amirosein • 70 • updated 2.5 years ago by mforde84 • 1.2k
2
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2
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1.2k
views
2
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Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 3.7 years ago by a.s.c • 0 • updated 2.5 years ago by Biostar ♦♦ 20
24
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2
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14k
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9 follow
2
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What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 8.4 years ago by Chronos • 570 • updated 2.6 years ago by anderspitman • 60
3
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1
answer
2.1k
views
1
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Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 4.9 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 3.0 years ago by Biostar ♦♦ 20
7
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1
answer
3.3k
views
1
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Hisat2 on multiple paired-end input
genome read rna-seq isoform sequencing written 3.1 years ago by dovah • 30 • updated 3.1 years ago by Devon Ryan ♦ 90k
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