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0
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Samtools Read Coverage At Bp And Call % At Each Base
read samtools coverage written 7.3 years ago by diltsjeri • 440 • updated 28 days ago by ATpoint ♦ 24k
0
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1
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185
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1
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Problem to Read my file : infinite loop
python infinite loop file read written 4 months ago by amandinelecerfdefer • 20 • updated 4 months ago by WouterDeCoster ♦ 41k
4
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2
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921
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2
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 22 months ago by Macspider • 3.0k • updated 5 months ago by shouldsee.gem • 0
1
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1
answer
393
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 6 months ago by nute11a • 0 • updated 6 months ago by Istvan Albert ♦♦ 81k
4
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1
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702
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1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 12 months ago by c.clarido • 50 • updated 11 months ago by Biostar ♦♦ 20
2
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1
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724
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5 follow
1
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is there any fast and accurate read mapper which provides an easy-to-use API?
read alignment written 20 months ago by Amirosein • 70
1
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0
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872
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0
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Showing the original subject when running BLAST
command read alignment blast dna written 3.7 years ago by kdsilva • 0 • updated 12 months ago by RamRS ♦ 24k
6
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1
answer
624
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6 follow
1
answer
Finding some specific SNPs in aligned sam file
sam file read snp written 13 months ago by hasani.iut6 • 40 • updated 13 months ago by Benn ♦ 7.8k
9
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4
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1.8k
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4
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Cases where indexing is efficient for read retrieval
read fastq speed database index written 4.3 years ago by blaise.li__biostars • 50 • updated 14 months ago by Biostar ♦♦ 20
2
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3
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5.0k
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5 follow
3
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Does Bam File Include Unmapped Reads As Well?
read bam mapping written 6.6 years ago by Jordan • 1.1k • updated 15 months ago by ammar.husami • 0
10
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1
answer
1.5k
views
8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 2.7 years ago by pmarijon • 120
1
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0
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373
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0
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Normalization of read counts
read counts written 17 months ago by dllopezr • 40
5
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2
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535
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2
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How to check if a read in a SAM file contains substitutions
read bam sam c++ written 19 months ago by omariqbal2017 • 0 • updated 19 months ago by d-cameron • 2.1k
6
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1
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484
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1
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Does each read in a BAM file have approximately the same size?
read bam size written 19 months ago by Aleksandra • 0 • updated 19 months ago by grant.hovhannisyan • 1.7k
33
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3
answers
17k
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16 follow
3
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Forward Strand Or Reverse Strand
read strand written 6.8 years ago by siyu • 130 • updated 22 months ago by h.mon ♦ 27k
2
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0
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843
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6 follow
0
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How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 22 months ago by prototommaso • 0
2
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2
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1.8k
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2
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What Do Marked Reads Mean In An Xsq File?
read solid written 6.7 years ago by Jordan • 1.1k • updated 23 months ago by Biostar ♦♦ 20
27
votes
2
answers
7.5k
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19 follow
2
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Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 5.3 years ago by Malachi Griffith ♦ 17k • updated 23 months ago by anu014 • 170
0
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0
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509
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0
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count of reads having multiple references
read alignment multiple references written 2.0 years ago by vmicrobio • 240
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676
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Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 2.1 years ago by O.rka • 120
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2
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3.4k
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2
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Tracking Reads/Contigs In Velvet
read velvet written 8.0 years ago by Abhi • 1.5k • updated 2.1 years ago by Biostar ♦♦ 20
0
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0
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1.7k
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0
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FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 2.4 years ago by seta • 1.2k
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2
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1.1k
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5 follow
2
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Modification of fastq header
read fastq header modification written 2.5 years ago by seta • 1.2k • updated 2.5 years ago by Charles Plessy • 2.7k
4
votes
2
answers
1.8k
views
7 follow
2
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NGS overlapping reads
read ngs alignment read-depth rna-seq written 2.6 years ago by xd_d • 90 • updated 2.6 years ago by d-cameron • 2.1k
4
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3
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7.0k
views
7 follow
3
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Remove Duplicate Reads From Fasta File
fasta read written 7.0 years ago by deepthithomaskannan • 270 • updated 2.7 years ago by Eslam Samir • 100
0
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0
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853
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0
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How to identify read depth from maf files?
maf read sequencing depth written 2.7 years ago by omd • 10
1
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1
answer
895
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1
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how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 2.8 years ago by Amirosein • 70 • updated 2.8 years ago by mforde84 • 1.2k
2
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2
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1.3k
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2
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Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 4.0 years ago by a.s.c • 0 • updated 2.8 years ago by Biostar ♦♦ 20
24
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2
answers
15k
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9 follow
2
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What Is Ad (Allelic Depth) In 1000Genomes Vcf?
genome read allele written 8.7 years ago by Chronos • 570 • updated 2.9 years ago by anderspitman • 60
3
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1
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2.2k
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1
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Quick method for calculating mean and standard deviation of read coverage of a chromosome.
fast read read depth\ coverage quick written 5.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 3.4 years ago by Biostar ♦♦ 20
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