Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 150 results • page 1 of 5 • next >
3
votes
1
answer
136
views
1
answer
Difference between mate-pair, paired-end and long read
assembly read written 11 days ago by Chvatil • 50
3
votes
0
answers
152
views
0
answers
Tool: SamReadViewer - A small utility to visualise read alignment directly from sam format without reference.
viewer read sam tool written 26 days ago by Juke34 • 4.8k
0
votes
0
answers
174
views
0
answers
Tool for Iterative mapping
read mapping tool written 6 months ago by pr • 10 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.7k
views
1
answer
Bowtie Accuracy
read next-gen bowtie alignment written 8.2 years ago by Arpssss • 40 • updated 5 months ago by Biostar ♦♦ 20
2
votes
2
answers
229
views
2
answers
Cannot run HaplotypeCaller in GATK
haplotypecaller gatk groups snp read written 8 months ago by ImBioMario • 0 • updated 8 months ago by devarora • 240
7
votes
1
answer
3.1k
views
1
answer
Alignment Software To Only Find Number Of Short Read Alignments?
short read alignment written 7.8 years ago by Click downvote • 690 • updated 11 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.6k
views
1
answer
Samtools Read Coverage At Bp And Call % At Each Base
read samtools coverage written 8.4 years ago by diltsjeri • 440 • updated 13 months ago by ATpoint ♦ 40k
0
votes
1
answer
315
views
1
answer
Problem to Read my file : infinite loop
python infinite loop file read written 16 months ago by amandinelecerfdefer • 20 • updated 16 months ago by WouterDeCoster ♦ 44k
4
votes
2
answers
1.6k
views
2
answers
CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 2.9 years ago by Macspider • 3.2k • updated 18 months ago by shouldsee.gem • 0
1
vote
1
answer
1.1k
views
1
answer
Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 19 months ago by nute11a • 20 • updated 19 months ago by Istvan Albert ♦♦ 85k
4
votes
1
answer
1.4k
views
1
answer
bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 2.1 years ago by c.clarido • 60 • updated 24 months ago by Biostar ♦♦ 20
2
votes
1
answer
901
views
5 follow
1
answer
is there any fast and accurate read mapper which provides an easy-to-use API?
read alignment written 2.7 years ago by Amirosein • 70
1
vote
0
answers
1.1k
views
0
answers
Showing the original subject when running BLAST
command read alignment blast dna written 4.7 years ago by kdsilva • 0 • updated 2.1 years ago by RamRS ♦ 30k
6
votes
1
answer
941
views
6 follow
1
answer
Finding some specific SNPs in aligned sam file
sam file read snp written 2.2 years ago by hasani.iut6 • 40 • updated 2.2 years ago by Benn ♦ 8.0k
9
votes
4
answers
2.1k
views
4
answers
Cases where indexing is efficient for read retrieval
read fastq speed database index written 5.3 years ago by blaise.li__biostars • 50 • updated 2.3 years ago by Biostar ♦♦ 20
2
votes
3
answers
6.0k
views
5 follow
3
answers
Does Bam File Include Unmapped Reads As Well?
read bam mapping written 7.6 years ago by Jordan • 1.2k • updated 2.3 years ago by ammar.husami • 0
10
votes
1
answer
1.8k
views
8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 3.8 years ago by pmarijon • 120
1
vote
0
answers
510
views
0
answers
Normalization of read counts
read counts written 2.5 years ago by dllopezr • 60
5
votes
2
answers
686
views
2
answers
How to check if a read in a SAM file contains substitutions
read bam sam c++ written 2.6 years ago by omariqbal2017 • 0 • updated 2.6 years ago by d-cameron • 2.2k
6
votes
1
answer
730
views
1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 2.7 years ago by Aleksandra • 0 • updated 2.7 years ago by grant.hovhannisyan • 2.0k
34
votes
3
answers
20k
views
16 follow
3
answers
Forward Strand Or Reverse Strand
read strand written 7.9 years ago by siyu • 140 • updated 2.9 years ago by h.mon ♦ 31k
2
votes
0
answers
1.1k
views
6 follow
0
answers
How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 2.9 years ago by prototommaso • 0
2
votes
2
answers
2.0k
views
2
answers
What Do Marked Reads Mean In An Xsq File?
read solid written 7.7 years ago by Jordan • 1.2k • updated 3.0 years ago by Biostar ♦♦ 20
27
votes
2
answers
8.2k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 6.4 years ago by Malachi Griffith ♦ 18k • updated 3.0 years ago by anu014 • 180
0
votes
0
answers
664
views
0
answers
count of reads having multiple references
read alignment multiple references written 3.1 years ago by vmicrobio • 250
0
votes
0
answers
931
views
0
answers
Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 3.1 years ago by O.rka • 220
6
votes
2
answers
3.7k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 9.1 years ago by Abhi • 1.5k • updated 3.2 years ago by Biostar ♦♦ 20
0
votes
0
answers
2.2k
views
0
answers
FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 3.5 years ago by seta • 1.4k
1
vote
2
answers
1.6k
views
5 follow
2
answers
Modification of fastq header
read fastq header modification written 3.6 years ago by seta • 1.4k • updated 3.5 years ago by Charles Plessy • 2.7k
4
votes
2
answers
2.5k
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 3.6 years ago by xd_d • 100 • updated 3.6 years ago by d-cameron • 2.2k
<prev • 150 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • France/Evry/Genhotel, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1429 users visited in the last hour