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Tool for Iterative mapping
read mapping tool written 10 weeks ago by pr • 10 • updated 3 days ago by Biostar ♦♦ 20
1
vote
1
answer
1.6k
views
1
answer
Bowtie Accuracy
read next-gen bowtie alignment written 7.9 years ago by Arpssss • 40 • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
173
views
2
answers
Cannot run HaplotypeCaller in GATK
haplotypecaller gatk groups snp read written 4 months ago by ImBioMario • 0 • updated 4 months ago by devarora • 150
7
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1
answer
3.0k
views
1
answer
Alignment Software To Only Find Number Of Short Read Alignments?
short read alignment written 7.4 years ago by Click downvote • 690 • updated 7 months ago by Biostar ♦♦ 20
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1
answer
1.5k
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1
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Samtools Read Coverage At Bp And Call % At Each Base
read samtools coverage written 8.1 years ago by diltsjeri • 440 • updated 9 months ago by ATpoint ♦ 36k
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1
answer
287
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1
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Problem to Read my file : infinite loop
python infinite loop file read written 12 months ago by amandinelecerfdefer • 20 • updated 12 months ago by WouterDeCoster ♦ 44k
4
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2
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1.4k
views
2
answers
CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 2.6 years ago by Macspider • 3.0k • updated 14 months ago by shouldsee.gem • 0
1
vote
1
answer
810
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1
answer
Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 15 months ago by nute11a • 20 • updated 15 months ago by Istvan Albert ♦♦ 84k
4
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1
answer
1.2k
views
1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 21 months ago by c.clarido • 50 • updated 20 months ago by Biostar ♦♦ 20
2
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1
answer
845
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5 follow
1
answer
is there any fast and accurate read mapper which provides an easy-to-use API?
read alignment written 2.4 years ago by Amirosein • 70
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0
answers
1.0k
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0
answers
Showing the original subject when running BLAST
command read alignment blast dna written 4.4 years ago by kdsilva • 0 • updated 21 months ago by RamRS ♦ 27k
6
votes
1
answer
857
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6 follow
1
answer
Finding some specific SNPs in aligned sam file
sam file read snp written 22 months ago by hasani.iut6 • 40 • updated 22 months ago by Benn ♦ 8.0k
9
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4
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2.0k
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4
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Cases where indexing is efficient for read retrieval
read fastq speed database index written 5.0 years ago by blaise.li__biostars • 50 • updated 23 months ago by Biostar ♦♦ 20
2
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3
answers
5.7k
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5 follow
3
answers
Does Bam File Include Unmapped Reads As Well?
read bam mapping written 7.3 years ago by Jordan • 1.1k • updated 24 months ago by ammar.husami • 0
10
votes
1
answer
1.7k
views
8 follow
1
answer
What's a good PacBio CLR read simulator?
read simulator written 3.4 years ago by pmarijon • 120
1
vote
0
answers
466
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0
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Normalization of read counts
read counts written 2.1 years ago by dllopezr • 60
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2
answers
644
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2
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How to check if a read in a SAM file contains substitutions
read bam sam c++ written 2.3 years ago by omariqbal2017 • 0 • updated 2.3 years ago by d-cameron • 2.2k
6
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1
answer
645
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1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 2.4 years ago by Aleksandra • 0 • updated 2.4 years ago by grant.hovhannisyan • 2.0k
34
votes
3
answers
19k
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16 follow
3
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Forward Strand Or Reverse Strand
read strand written 7.5 years ago by siyu • 130 • updated 2.6 years ago by h.mon ♦ 30k
2
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0
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1000
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6 follow
0
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How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 2.6 years ago by prototommaso • 0
2
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2
answers
1.9k
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2
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What Do Marked Reads Mean In An Xsq File?
read solid written 7.4 years ago by Jordan • 1.1k • updated 2.6 years ago by Biostar ♦♦ 20
27
votes
2
answers
8.0k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 6.0 years ago by Malachi Griffith ♦ 18k • updated 2.6 years ago by anu014 • 180
0
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0
answers
616
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0
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count of reads having multiple references
read alignment multiple references written 2.7 years ago by vmicrobio • 250
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865
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0
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Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 2.8 years ago by O.rka • 180
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2
answers
3.6k
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2
answers
Tracking Reads/Contigs In Velvet
read velvet written 8.8 years ago by Abhi • 1.5k • updated 2.8 years ago by Biostar ♦♦ 20
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0
answers
2.1k
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0
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FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 3.1 years ago by seta • 1.3k
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2
answers
1.4k
views
5 follow
2
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Modification of fastq header
read fastq header modification written 3.2 years ago by seta • 1.3k • updated 3.2 years ago by Charles Plessy • 2.7k
4
votes
2
answers
2.2k
views
7 follow
2
answers
NGS overlapping reads
read ngs alignment read-depth rna-seq written 3.3 years ago by xd_d • 90 • updated 3.3 years ago by d-cameron • 2.2k
4
votes
3
answers
7.9k
views
7 follow
3
answers
Remove Duplicate Reads From Fasta File
fasta read written 7.8 years ago by deepthithomaskannan • 320 • updated 3.4 years ago by Eslam Samir • 100
0
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0
answers
970
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0
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How to identify read depth from maf files?
maf read sequencing depth written 3.4 years ago by omd • 10
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