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<prev • 147 results • page 1 of 5 • next >
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Cannot run HaplotypeCaller in GATK
haplotypecaller gatk groups snp read written 2 hours ago by ImBioMario • 0
7
votes
1
answer
2.9k
views
1
answer
Alignment Software To Only Find Number Of Short Read Alignments?
short read alignment written 7.1 years ago by Click downvote • 670 • updated 12 weeks ago by Biostar ♦♦ 20
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1
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1.4k
views
1
answer
Samtools Read Coverage At Bp And Call % At Each Base
read samtools coverage written 7.7 years ago by diltsjeri • 440 • updated 5 months ago by ATpoint ♦ 30k
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1
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243
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1
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Problem to Read my file : infinite loop
python infinite loop file read written 8 months ago by amandinelecerfdefer • 20 • updated 8 months ago by WouterDeCoster ♦ 43k
4
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2
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1.2k
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2
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 2.2 years ago by Macspider • 3.0k • updated 10 months ago by shouldsee.gem • 0
1
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1
answer
597
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 11 months ago by nute11a • 20 • updated 11 months ago by Istvan Albert ♦♦ 82k
4
votes
1
answer
947
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1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 17 months ago by c.clarido • 50 • updated 15 months ago by Biostar ♦♦ 20
2
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1
answer
793
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5 follow
1
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is there any fast and accurate read mapper which provides an easy-to-use API?
read alignment written 2.0 years ago by Amirosein • 70
1
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939
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Showing the original subject when running BLAST
command read alignment blast dna written 4.0 years ago by kdsilva • 0 • updated 17 months ago by RamRS ♦ 25k
6
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1
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743
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6 follow
1
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Finding some specific SNPs in aligned sam file
sam file read snp written 18 months ago by hasani.iut6 • 40 • updated 18 months ago by Benn ♦ 7.9k
9
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4
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1.9k
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4
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Cases where indexing is efficient for read retrieval
read fastq speed database index written 4.6 years ago by blaise.li__biostars • 50 • updated 19 months ago by Biostar ♦♦ 20
2
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3
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5.3k
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5 follow
3
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Does Bam File Include Unmapped Reads As Well?
read bam mapping written 7.0 years ago by Jordan • 1.1k • updated 19 months ago by ammar.husami • 0
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1
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1.6k
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8 follow
1
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What's a good PacBio CLR read simulator?
read simulator written 3.1 years ago by pmarijon • 120
1
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426
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Normalization of read counts
read counts written 21 months ago by dllopezr • 60
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2
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605
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2
answers
How to check if a read in a SAM file contains substitutions
read bam sam c++ written 23 months ago by omariqbal2017 • 0 • updated 23 months ago by d-cameron • 2.1k
6
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1
answer
559
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1
answer
Does each read in a BAM file have approximately the same size?
read bam size written 2.0 years ago by Aleksandra • 0 • updated 2.0 years ago by grant.hovhannisyan • 1.9k
33
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3
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18k
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16 follow
3
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Forward Strand Or Reverse Strand
read strand written 7.2 years ago by siyu • 130 • updated 2.2 years ago by h.mon ♦ 29k
2
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0
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926
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6 follow
0
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How to write a program in Perl that read a FASTQ file? after then, there is a method to convert the quality score from ASCII to numeric?
perl read fastq ascii quality score written 2.2 years ago by prototommaso • 0
2
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2
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1.9k
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2
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What Do Marked Reads Mean In An Xsq File?
read solid written 7.1 years ago by Jordan • 1.1k • updated 2.3 years ago by Biostar ♦♦ 20
27
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2
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7.8k
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19 follow
2
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Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 5.7 years ago by Malachi Griffith ♦ 18k • updated 2.3 years ago by anu014 • 170
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584
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count of reads having multiple references
read alignment multiple references written 2.4 years ago by vmicrobio • 240
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0
answers
783
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0
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Set percent identity and percent length covered in HISAT2 mapping
read hisat2 mapping genomics sequencing written 2.5 years ago by O.rka • 170
6
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2
answers
3.5k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 8.4 years ago by Abhi • 1.5k • updated 2.5 years ago by Biostar ♦♦ 20
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1.9k
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0
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FastX Collapser and duplicate removal
read ngs fastx collapser duplicate written 2.8 years ago by seta • 1.2k
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2
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1.2k
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5 follow
2
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Modification of fastq header
read fastq header modification written 2.9 years ago by seta • 1.2k • updated 2.9 years ago by Charles Plessy • 2.7k
4
votes
2
answers
2.0k
views
7 follow
2
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NGS overlapping reads
read ngs alignment read-depth rna-seq written 3.0 years ago by xd_d • 90 • updated 3.0 years ago by d-cameron • 2.1k
4
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3
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7.5k
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7 follow
3
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Remove Duplicate Reads From Fasta File
fasta read written 7.4 years ago by deepthithomaskannan • 320 • updated 3.0 years ago by Eslam Samir • 100
0
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0
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920
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0
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How to identify read depth from maf files?
maf read sequencing depth written 3.1 years ago by omd • 10
1
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1
answer
976
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1
answer
how to write some sequences in a (.fq)-like file?
write R writexstringset io read written 3.1 years ago by Amirosein • 70 • updated 3.1 years ago by mforde84 • 1.2k
2
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2
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1.4k
views
2
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Is it possible to get a merged fasta/fastq reads from a bam file?
read merge bam written 4.4 years ago by a.s.c • 0 • updated 3.2 years ago by Biostar ♦♦ 20
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