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<prev • 158 results • page 1 of 6 • next >
3
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82
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Remove/Delete unique reads from a DNA fasta file
fasta unique reads remove dna written 5 hours ago by saanasum • 0 • updated 4 hours ago by genomax ♦ 60k
1
vote
1
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67
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1
answer
Number of passing clusters vs. number of read pairs vs. total number of reads
reads illumina flowcell written 5 days ago by AP • 90 • updated 5 days ago by genomax ♦ 60k
0
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0
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91
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0
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abyss-pe output after filtering reads
reads assembly sequencing written 9 days ago by max_19 • 10
4
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1
answer
151
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1
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Extracting Reads from paired end data in SAM file that map to a list of contig IDs
reads bam sequencing written 4 weeks ago by yl2019 • 10
0
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0
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109
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0
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Practices for mapping reads to De Novo metagenomic assembly
de novo assembly reads metagenomic megahit written 5 weeks ago by doron • 0
0
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0
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172
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0
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How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 7 weeks ago by DK • 70 • updated 7 weeks ago by WouterDeCoster ♦ 36k
0
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105
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diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
reads picard bam fastqc written 7 weeks ago by kk.mahsa • 80
2
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1
answer
206
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1
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GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 3 months ago by marongiu.luigi • 350 • updated 3 months ago by Pierre Lindenbaum ♦ 116k
5
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0
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248
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5 follow
0
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Remove duplicate lines based on specific columns
reads R intersect python written 3 months ago by dzisis1986 • 20 • updated 3 months ago by RamRS ♦ 20k
4
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2
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219
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6 follow
2
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discrepancy between reads
reads bam igv deletion written 4 months ago by n.mekkes • 0 • updated 4 months ago by swbarnes2 ♦ 4.7k
1
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0
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270
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0
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Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 4 months ago by c.clarido • 40
4
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1
answer
235
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1
answer
Number of reads in different alignments
sam file reads alignment written 4 months ago by marongiu.luigi • 350 • updated 4 months ago by RamRS ♦ 20k
9
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3
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2.2k
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6 follow
3
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How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 5.8 years ago by siyu • 130 • updated 4 months ago by Biostar ♦♦ 20
3
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431
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Understanding subsampling with Samtools
reads samtools subsampling rna-seq seed written 5 months ago by m93 • 130
17
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8
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21k
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11 follow
8
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How to count fastq reads
reads sequence fastq next-gen written 3.8 years ago by Chenglin • 90 • updated 5 months ago by johnsonnathant • 70
0
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1
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273
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1
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Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 5 months ago by alongalor • 0
2
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0
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218
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0
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Get the regions mapped by the same reads
reads bed bam multiple alignments sam written 5 months ago by Corentin • 180
2
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1
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433
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1
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PacBio and ONT reads difference !
reads nanopore pacbio written 5 months ago by BioGeek • 140 • updated 5 months ago by h.mon ♦ 22k
54
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1
answer
45k
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39 follow
1
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Number of mapped reads from BAM file
reads bam sam mapping written 3.8 years ago by Prakki Rama • 2.2k • updated 5 months ago by iraia.munoa • 50
0
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0
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174
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0
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Is there any mapper to map the long/short reads against phased genome?
reads alignment mapper longreads phased written 7 months ago by BioGeek • 140
6
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2
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344
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6 follow
2
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Blast many read sequences
reads alignment contamination blast written 7 months ago by zoegward • 50 • updated 7 months ago by Vijay Lakhujani ♦ 3.5k
1
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1
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297
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1
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Software for Quality Check of reads
reads illumina quality check prinseq written 8 months ago by utkarsh.sood • 30 • updated 8 months ago by genomax ♦ 60k
1
vote
1
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170
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1
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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 8 months ago by deepti1rao • 20 • updated 8 months ago by toralmanvar • 730
1
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0
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328
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0
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How to check if a read in a Bam file is paired or not?
reads paired reads bam sam single paired reads written 8 months ago by omariqbal2017 • 0
5
votes
2
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457
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2
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What's Supplementary Reads?
reads alignment tool written 9 months ago by 2012secondseason • 10 • updated 9 months ago by Bastien Hervé ♦ 2.8k
0
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2
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341
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5 follow
2
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Extracting counts of reads into a matrix
reads grep counts unix written 10 months ago by rmash • 0 • updated 10 months ago by cpad0112 ♦ 10k
1
vote
1
answer
448
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1
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What's the difference between half mapped reads and single paired reads?
reads single reads bam sam paired reads written 10 months ago by omariqbal2017 • 0 • updated 10 months ago by d-cameron • 1.9k
1
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0
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272
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0
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 10 months ago by BioGeek • 140
0
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1
answer
525
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1
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Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 11 months ago by bhchiang • 0 • updated 11 months ago by Kevin Blighe ♦ 35k
2
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0
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674
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5 follow
0
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Reverse complements in BWA
reads alignment sequence written 11 months ago by dp • 10
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