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<prev • 115 results • page 1 of 4 • next >
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MuMRescueLite.py - multi-mapping reads rescue script failing
reads mapping written 5 days ago by newscient • 0
3
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1
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101
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1
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Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 17 days ago by cristian • 50 • updated 17 days ago by Devon Ryan ♦ 69k
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134
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Random downsampling without replacement in bam files only in regions with coverage>x
reads bam coverage written 4 weeks ago by victorv888 • 0
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127
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Difference between read and contig based taxonomic classification
reads classification contigs taxonomic written 7 weeks ago by BAGeno • 20 • updated 5 weeks ago by Sej Modha • 1.5k
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5 follow
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Calculating p-Value for an observed/expected Ratio
reads chip-seq written 8 weeks ago by chrys • 30 • updated 8 weeks ago by Ben • 50
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1
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172
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wgsim no output
reads assembly wgsim written 10 weeks ago by robinjugas • 0
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226
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Remove duplicates reads Ids
reads duplicates fastq mapping ids written 11 weeks ago by BioGeek • 80
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185
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How to extract high coverage region from BAM?
reads ngs bam coverage mapping written 3 months ago by BioGeek • 80 • updated 3 months ago by Pierre Lindenbaum ♦ 96k
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180
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QIEA and CRO algorithms for assembly of sequencing reads produced by NGS technology
reads assembly ngs algorithm written 3 months ago by seta • 900
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How does coverage of all contigs varies?
reads ngs coverage depth written 3 months ago by BioGeek • 80 • updated 3 months ago by h.mon ♦ 7.3k
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239
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Remove specific reads from fastq file
reads fastq written 3 months ago by chrys • 30 • updated 3 months ago by genomax ♦ 31k
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2
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239
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How to cluster reads within the fastq file? Is their any tool?
reads assembly fastq alignment clustering written 4 months ago by bioinforesearchquestions • 80 • updated 4 months ago by Alex Reynolds ♦ 19k
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[solved] Read a file once and get next lines that match a list of pattern with awk ?
reads barcode grep sed awk written 4 months ago by Franck8413 • 10
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150
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Most represented reads in SAM file
reads sam representated written 4 months ago by Picasa • 290
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How to extract all - strand mapped reads location of reference genome using BAM file?
reads ngs bam sam written 4 months ago by BioGeek • 80
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154
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Mapping reads to Primers Combinations(Custom Reference Genome)
reads mapping sequencing written 5 months ago by bharath.mh24 • 0
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589
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5 follow
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Fastq Trimmer by pattern
reads fastq trimming terminal written 6 months ago by dzisis1986 • 0
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300
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Metagenome Read Simulators
reads simulator metagenomics written 5 months ago by dlawre14 • 10 • updated 5 months ago by genomax ♦ 31k
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7 follow
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How Can I Find Out Unknown Illumina Barcode.
reads illumina fastq hiseq written 3.5 years ago by samsara • 510 • updated 5 months ago by elgart • 0
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How to confirm forward and reverse primer matches the beggining of each read and keep only reads with fwd and rev primers ?
reads fastq primers filtering sequencing written 6 months ago by dzisis1986 • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 96k
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1.8k
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3
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aligner for CORRECTED pacbio long reads
reads pacbio align longreads sequencing written 2.5 years ago by cmo • 30 • updated 6 months ago by Felix Francis • 400
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1
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Difference between samtools DEPTH and MPILEUP
reads samtools chip-seq mpileup depth written 9 months ago by ariel.balter • 100 • updated 9 months ago by Devon Ryan ♦ 69k
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279
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Metagenomic Iontorrent reads: filtering and denoising
reads denoise metagenome filtering written 9 months ago by fhsantanna • 290 • updated 9 months ago by sacha • 770
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1
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359
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Variant calling within and between 2 nematode strains
reads reference genome snp written 10 months ago by standonn • 0 • updated 10 months ago by Medhat • 6.7k
2
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1
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557
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1
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Read length distribution of PacBio
reads ngs long reads pacbio sequencing written 10 months ago by midox • 180 • updated 10 months ago by Antonio R. Franco • 3.3k
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361
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Reduce the number of PE reads by half
reads assembly ngs pe written 11 months ago by BioGeek • 80 • updated 11 months ago by igor • 4.4k
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1
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668
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1
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Inward oriented pairs and outward oriented pairs from a BAM file - Bamcheck vs Samtools
reads pairs bam sam written 11 months ago by Prakki Rama • 2.0k
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5 follow
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How Do I Estimate The Number Of Rna-Seq Reads Needed To Detect Differential Expression?
reads differential-expression rna-seq written 3.7 years ago by scottdaniel25 • 30 • updated 11 months ago by Biostar ♦♦ 20
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549
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Duplicate reads in RNA-seq
reads duplicate picard rna-seq written 12 months ago by mmrcksn • 50 • updated 12 months ago by igor • 4.4k
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What is the range of coverage depth of bacteria from environment sample?
gene reads next-gen-seq assembly written 12 months ago by thustar • 40
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