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<prev • 142 results • page 1 of 5 • next >
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Is there any mapper to map the long/short reads against phased genome?
reads alignment mapper longreads phased written 4 weeks ago by BioGeek • 130
6
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2
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186
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6 follow
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Blast many read sequences
reads alignment contamination blast written 6 weeks ago by zoegward • 40 • updated 6 weeks ago by Vijay Lakhujani ♦ 2.8k
1
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1
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134
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1
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Software for Quality Check of reads
reads illumina quality check prinseq written 9 weeks ago by utkarsh.sood • 30 • updated 9 weeks ago by genomax ♦ 52k
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1
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85
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1
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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 10 weeks ago by deepti1rao • 0 • updated 10 weeks ago by toralmanvar • 420
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153
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How to check if a read in a Bam file is paired or not?
reads paired reads bam sam single paired reads written 10 weeks ago by omariqbal2017 • 0
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2
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173
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2
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What's Supplementary Reads?
reads alignment tool written 3 months ago by 2012secondseason • 10 • updated 3 months ago by Bastien Hervé • 1.5k
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2
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217
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5 follow
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Extracting counts of reads into a matrix
reads grep counts unix written 4 months ago by rmash • 0 • updated 4 months ago by cpad0112 • 7.7k
1
vote
1
answer
233
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1
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What's the difference between half mapped reads and single paired reads?
reads single reads bam sam paired reads written 4 months ago by omariqbal2017 • 0 • updated 4 months ago by d-cameron • 1.8k
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157
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 4 months ago by BioGeek • 130
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1
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279
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1
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Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 4 months ago by bhchiang • 0 • updated 4 months ago by Kevin Blighe ♦ 24k
11
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7
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14k
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8 follow
7
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How to count fastq reads
reads sequence fastq next-gen written 3.3 years ago by Chenglin • 90 • updated 5 months ago by sacha • 1.3k
2
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0
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434
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5 follow
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Reverse complements in BWA
reads alignment sequence written 5 months ago by dp • 10
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1
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238
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1
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bbduk: quality filtering and singletons
genome reads bbmap written 5 months ago by rororo • 0
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2
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314
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2
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Remove masked (N) based from reads in fastq library
reads remove masked cutadapt written 7 months ago by TWV • 30 • updated 7 months ago by chen • 1.6k
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205
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Can a part of a read be in the alignment and in the supplementary alignment (-F 0x800) as well?
reads supplementary chimeric bwa sequencing written 7 months ago by Macspider • 2.4k
2
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1
answer
351
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1
answer
Map eukaryotic genomic reads to transcript reference of closely related organism
splice-aware reads mapping rna-seq splice-unaware written 7 months ago by al-ash • 50 • updated 7 months ago by ori • 50
3
votes
1
answer
362
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5 follow
1
answer
Simulation of single-end reads from reference genome
reads simulation written 7 months ago by newscient • 10
0
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1
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312
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1
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 8 months ago by deepti1rao • 0 • updated 8 months ago by genomax ♦ 52k
4
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2
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436
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2
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Trimming reads with prinseq
reads preprocessing prinseq qual trim written 8 months ago by deepti1rao • 0
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322
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0
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How do I remove mtdna reads from ddRad reads?
reads mitochondrial next-gen ddrad rad-seq written 8 months ago by asbiologa • 0
1
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1
answer
526
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1
answer
UMI-tools: reads with different sizes in the same UMI group
reads group umi-tools written 9 months ago by Nicolas Rosewick ♦ 6.5k
2
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510
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What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 10 months ago by bioinforesearchquestions • 140
2
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0
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386
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0
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CRISPR screening analysis using mageck
crispr reads mageck screening written 10 months ago by Folder40g • 110
2
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0
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688
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5 follow
0
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Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 11 months ago by anin.gregory • 70
0
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0
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513
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0
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Normalization of NGS data to make CNV calls
reads R ngs cnv normalization written 11 months ago by caspase8mach • 0
4
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442
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0
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Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 11 months ago by aka001 • 180
0
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1
answer
417
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1
answer
Low quality of reads in reverse files toward the last bases
reads illumina quality scores written 11 months ago by deepti1rao • 0 • updated 11 months ago by Devon Ryan ♦ 81k
4
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1
answer
821
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1
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Minimum length of reads
reads processing ngs trimming quality written 11 months ago by deepti1rao • 0
2
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1
answer
562
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1
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Where i can find sequencing reads(3rd generation sequencing) data set in which each read length is above 1000bp?
reads written 11 months ago by saranpons3 • 50 • updated 11 months ago by WouterDeCoster ♦ 30k
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1
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379
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1
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Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 12 months ago by cristian • 110 • updated 12 months ago by Devon Ryan ♦ 81k
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