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<prev • 188 results • page 1 of 7 • next >
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Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene reads metagenomics tpm written 7 days ago by Hansen_869 • 20 • updated 7 days ago by tshtatland • 50
3
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1
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111
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1
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How do I know how much memory to use when piping to with BBMap suite (OutOfMemoryError)?
reads java bbmap memory written 4 weeks ago by O.rka • 150 • updated 4 weeks ago by h.mon ♦ 29k
1
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1
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530
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5 follow
1
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 22 months ago by BioGeek • 140 • updated 5 weeks ago by lagartija • 60
1
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0
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108
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0
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STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 5 weeks ago by spriyansh29 • 30
3
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1
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155
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1
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Access to SRA read from a specific genome assembly on NCBI
ncbi assembly reads written 6 weeks ago by Darill • 40
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1
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213
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1
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Difference between Pysam Pileup and Fetch
reads bam pysam pileup written 4 months ago by aalith • 10 • updated 7 weeks ago by castaway1990 • 0
6
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2
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245
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2
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Subset Fastq file from list of read numbers
reads fastq subset written 8 weeks ago by johnsonn573 • 0 • updated 8 weeks ago by Pierre Lindenbaum ♦ 125k
1
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1
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109
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1
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The Picard FilterSAM READ is throwing error
reads assembly picard rna-seq written 9 weeks ago by a.james • 210 • updated 9 weeks ago by Pierre Lindenbaum ♦ 125k
5
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1
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166
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1
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Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 11 weeks ago by SSK • 10 • updated 11 weeks ago by benformatics • 1.3k
1
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1
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191
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1
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Base count NOT read count - Downsampling to specific number of bases not reads?
reads bases fastq downsample seqtk written 3 months ago by jnowacki • 70 • updated 3 months ago by genomax ♦ 76k
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1.3k
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0
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 6.5 years ago by Angel • 210 • updated 3 months ago by Biostar ♦♦ 20
1
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0
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186
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0
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Low mapping rate for human NGS PE reads to hs37d5 genome
reads ngs hs37d5 human low mapping rate written 3 months ago by Ginsea Chen • 130
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0
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181
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0
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 3 months ago by SSK • 10
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2
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1.2k
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2
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Simulating Bacterial Population
reads population simulate bacterial written 3.6 years ago by Sama • 60 • updated 3 months ago by Biostar ♦♦ 20
0
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1
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138
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1
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Mapping NextSeq reads to reference genome in Galaxy
reads nextseq analysis raw data assembly written 3 months ago by WCG3 • 10
0
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1
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272
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1
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concatenating FASTQ forward and reverse reads in Snakemake
reads fastq forward concatenate bash written 4 months ago by Hansen_869 • 20 • updated 4 months ago by Eric Lim • 1.6k
2
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0
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164
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0
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In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 4 months ago by Rajinder Gupta • 10
2
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1
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236
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1
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In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 4 months ago by Joseph Hughes • 2.8k • updated 4 months ago by h.mon ♦ 29k
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1.3k
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0
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 4.1 years ago by arif.at.iut • 0 • updated 5 months ago by Biostar ♦♦ 20
14
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3
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405
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7 follow
3
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Read length for metagenomics analysis
gene assembly reads metagenomic written 5 months ago by magnuskerber • 10 • updated 5 months ago by Buffo • 1.8k
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279
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 6 months ago by bz3 • 0
10
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4
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10k
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13 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.6 years ago by lwc628 • 210 • updated 7 months ago by m13113153781 • 0
5
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0
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614
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5 follow
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How to extract reads which contain specific sequence from fastq file
reads fastq extract written 7 months ago by hsu • 10 • updated 7 months ago by WouterDeCoster ♦ 42k
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0
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253
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0
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Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 8 months ago by Elizabeth • 20
0
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0
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300
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0
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Quast shows different reads count for the same fastq file?
reads fastq contig quast written 9 months ago by DanielC • 100
0
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0
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661
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0
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How to get gene counts with HTseq
reads htseq counts rna-seq written 10 months ago by Michel Edwar • 70
1
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1
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436
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1
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Transcript quantification using the reference transcriptome(gencode) and the raw RNA-Seq reads without mapping it to reference genome.
reads quantification transcript rna-seq sequencing written 10 months ago by Glory Basumata • 140 • updated 10 months ago by JC ♦ 9.3k
3
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1
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499
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1
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Find common reads between two bam files
reads bam sequencing written 10 months ago by yp19 • 50 • updated 10 months ago by Pierre Lindenbaum ♦ 125k
0
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1
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316
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1
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fastq reads cleaning
reads fastq cleaning written 10 months ago by blueskypie • 50
2
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1
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455
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1
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Percent reads mapped in Picard
reads next-generation sequencing picard mapping written 11 months ago by phylofun • 50
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