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<prev • 149 results • page 1 of 5 • next >
3
votes
2
answers
111
views
6 follow
2
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discrepancy between reads
reads bam igv deletion written 6 days ago by n.mekkes • 0 • updated 5 days ago by swbarnes2 ♦ 4.0k
1
vote
0
answers
94
views
0
answers
Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 11 days ago by cedrickclarido • 0
4
votes
1
answer
150
views
1
answer
Number of reads in different alignments
sam file reads alignment written 24 days ago by marongiu.luigi • 300 • updated 24 days ago by RamRS ♦ 17k
9
votes
3
answers
2.0k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 5.5 years ago by siyu • 120 • updated 28 days ago by Biostar ♦♦ 20
3
votes
0
answers
212
views
0
answers
Understanding subsampling with Samtools
reads samtools subsampling rna-seq seed written 4 weeks ago by m93 • 90
12
votes
8
answers
17k
views
10 follow
8
answers
How to count fastq reads
reads sequence fastq next-gen written 3.4 years ago by Chenglin • 90 • updated 6 weeks ago by johnsonnathant • 0
0
votes
1
answer
172
views
1
answer
Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 6 weeks ago by alongalor • 0
2
votes
0
answers
132
views
0
answers
Get the regions mapped by the same reads
reads bed bam multiple alignments sam written 6 weeks ago by Corentin • 170
2
votes
1
answer
134
views
1
answer
PacBio and ONT reads difference !
reads nanopore pacbio written 6 weeks ago by BioGeek • 130 • updated 6 weeks ago by h.mon ♦ 19k
52
votes
1
answer
41k
views
38 follow
1
answer
Number of mapped reads from BAM file
reads bam sam mapping written 3.4 years ago by Prakki Rama • 2.1k • updated 7 weeks ago by iraia.munoa • 10
0
votes
0
answers
109
views
0
answers
Is there any mapper to map the long/short reads against phased genome?
reads alignment mapper longreads phased written 3 months ago by BioGeek • 130
6
votes
2
answers
255
views
6 follow
2
answers
Blast many read sequences
reads alignment contamination blast written 3 months ago by zoegward • 50 • updated 3 months ago by Vijay Lakhujani ♦ 3.0k
1
vote
1
answer
183
views
1
answer
Software for Quality Check of reads
reads illumina quality check prinseq written 4 months ago by utkarsh.sood • 30 • updated 4 months ago by genomax ♦ 55k
1
vote
1
answer
121
views
1
answer
Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 4 months ago by deepti1rao • 0 • updated 4 months ago by toralmanvar • 530
1
vote
0
answers
229
views
0
answers
How to check if a read in a Bam file is paired or not?
reads paired reads bam sam single paired reads written 4 months ago by omariqbal2017 • 0
5
votes
2
answers
254
views
2
answers
What's Supplementary Reads?
reads alignment tool written 5 months ago by 2012secondseason • 10 • updated 5 months ago by Bastien Hervé • 1.8k
0
votes
2
answers
269
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 6 months ago by rmash • 0 • updated 6 months ago by cpad0112 • 9.0k
1
vote
1
answer
309
views
1
answer
What's the difference between half mapped reads and single paired reads?
reads single reads bam sam paired reads written 6 months ago by omariqbal2017 • 0 • updated 6 months ago by d-cameron • 1.9k
1
vote
0
answers
196
views
0
answers
How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 6 months ago by BioGeek • 130
0
votes
1
answer
382
views
1
answer
Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 7 months ago by bhchiang • 0 • updated 7 months ago by Kevin Blighe ♦ 28k
2
votes
0
answers
519
views
5 follow
0
answers
Reverse complements in BWA
reads alignment sequence written 7 months ago by dp • 10
1
vote
1
answer
315
views
1
answer
bbduk: quality filtering and singletons
genome reads bbmap written 8 months ago by rororo • 0
0
votes
2
answers
430
views
2
answers
Remove masked (N) based from reads in fastq library
reads remove masked cutadapt written 9 months ago by TWV • 50 • updated 9 months ago by chen • 1.7k
0
votes
0
answers
249
views
0
answers
Can a part of a read be in the alignment and in the supplementary alignment (-F 0x800) as well?
reads supplementary chimeric bwa sequencing written 9 months ago by Macspider • 2.5k
2
votes
1
answer
400
views
1
answer
Map eukaryotic genomic reads to transcript reference of closely related organism
splice-aware reads mapping rna-seq splice-unaware written 9 months ago by al-ash • 50 • updated 9 months ago by ori • 50
3
votes
1
answer
424
views
5 follow
1
answer
Simulation of single-end reads from reference genome
reads simulation written 9 months ago by newscient • 10
0
votes
1
answer
371
views
1
answer
bbduk for pre-processing
reads pre-processing bbduk bbmap written 10 months ago by deepti1rao • 0 • updated 10 months ago by genomax ♦ 55k
4
votes
2
answers
512
views
2
answers
Trimming reads with prinseq
reads preprocessing prinseq qual trim written 10 months ago by deepti1rao • 0
0
votes
0
answers
398
views
0
answers
How do I remove mtdna reads from ddRad reads?
reads mitochondrial next-gen ddrad rad-seq written 10 months ago by asbiologa • 0
1
vote
1
answer
680
views
1
answer
UMI-tools: reads with different sizes in the same UMI group
reads group umi-tools written 11 months ago by Nicolas Rosewick ♦ 6.6k
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