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<prev • 137 results • page 1 of 5 • next >
5
votes
2
answers
99
views
2
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What's Supplementary Reads?
reads alignment tool written 14 days ago by 2012secondseason • 10 • updated 13 days ago by Bastien Hervé • 610
0
votes
2
answers
153
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 4 weeks ago by rmash • 0 • updated 4 weeks ago by cpad0112 • 4.5k
1
vote
1
answer
111
views
1
answer
What's the difference between half mapped reads and single paired reads?
reads single reads bam sam paired reads written 5 weeks ago by omariqbal2017 • 0 • updated 5 weeks ago by d-cameron • 1.5k
1
vote
0
answers
118
views
0
answers
How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 7 weeks ago by BioGeek • 120
0
votes
1
answer
175
views
1
answer
Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 8 weeks ago by bhchiang • 0 • updated 8 weeks ago by Kevin Blighe ♦ 17k
7
votes
7
answers
11k
views
7 follow
7
answers
How to count fastq reads
reads sequence fastq next-gen written 3.0 years ago by Chenglin • 90 • updated 10 weeks ago by sacha • 1.1k
2
votes
0
answers
302
views
5 follow
0
answers
Reverse complements in BWA
reads alignment sequence written 11 weeks ago by dp • 10
1
vote
1
answer
156
views
1
answer
bbduk: quality filtering and singletons
genome reads bbmap written 3 months ago by rororo • 0
0
votes
2
answers
231
views
2
answers
Remove masked (N) based from reads in fastq library
reads remove masked cutadapt written 4 months ago by TWV • 30 • updated 4 months ago by chen • 1.5k
0
votes
0
answers
158
views
0
answers
Can a part of a read be in the alignment and in the supplementary alignment (-F 0x800) as well?
reads supplementary chimeric bwa sequencing written 4 months ago by Macspider • 2.4k
2
votes
1
answer
281
views
1
answer
Map eukaryotic genomic reads to transcript reference of closely related organism
splice-aware reads mapping rna-seq splice-unaware written 4 months ago by al-ash • 30 • updated 4 months ago by ori • 50
3
votes
1
answer
305
views
5 follow
1
answer
Simulation of single-end reads from reference genome
reads simulation written 4 months ago by newscient • 10
0
votes
1
answer
257
views
1
answer
bbduk for pre-processing
reads pre-processing bbduk bbmap written 5 months ago by deepti1rao • 0 • updated 5 months ago by genomax ♦ 46k
4
votes
2
answers
321
views
2
answers
Trimming reads with prinseq
reads preprocessing prinseq qual trim written 5 months ago by deepti1rao • 0
0
votes
0
answers
257
views
0
answers
How do I remove mtdna reads from ddRad reads?
reads mitochondrial next-gen ddrad rad-seq written 5 months ago by asbiologa • 0
1
vote
1
answer
330
views
1
answer
UMI-tools: reads with different sizes in the same UMI group
reads group umi-tools written 6 months ago by Nicolas Rosewick • 6.2k
2
votes
0
answers
415
views
0
answers
What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 7 months ago by bioinforesearchquestions • 120
2
votes
0
answers
306
views
0
answers
CRISPR screening analysis using mageck
crispr reads mageck screening written 7 months ago by runnerbio88 • 110
2
votes
0
answers
498
views
5 follow
0
answers
Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 8 months ago by anin.gregory • 70
0
votes
0
answers
437
views
0
answers
Normalization of NGS data to make CNV calls
reads R ngs cnv normalization written 8 months ago by caspase8mach • 0
4
votes
0
answers
390
views
0
answers
Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 8 months ago by aka001 • 180
0
votes
1
answer
366
views
1
answer
Low quality of reads in reverse files toward the last bases
reads illumina quality scores written 8 months ago by deepti1rao • 0 • updated 8 months ago by Devon Ryan ♦ 78k
4
votes
1
answer
648
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 8 months ago by deepti1rao • 0
2
votes
1
answer
427
views
1
answer
Where i can find sequencing reads(3rd generation sequencing) data set in which each read length is above 1000bp?
reads written 8 months ago by saranpons3 • 50 • updated 8 months ago by WouterDeCoster ♦ 27k
3
votes
1
answer
327
views
1
answer
Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 9 months ago by cristian • 80 • updated 9 months ago by Devon Ryan ♦ 78k
2
votes
1
answer
387
views
1
answer
Random downsampling without replacement in bam files only in regions with coverage>x
reads bam coverage written 10 months ago by victorv888 • 0
2
votes
1
answer
421
views
1
answer
Difference between read and contig based taxonomic classification
reads classification contigs taxonomic written 10 months ago by BAGeno • 60 • updated 10 months ago by Sej Modha • 2.8k
11
votes
3
answers
638
views
5 follow
3
answers
Calculating p-Value for an observed/expected Ratio
reads chip-seq written 11 months ago by chrys • 40 • updated 11 months ago by Ben • 50
2
votes
1
answer
471
views
1
answer
wgsim no output
reads assembly wgsim written 11 months ago by robinjugas • 0
2
votes
4
answers
666
views
8 follow
4
answers
Remove duplicates reads Ids
reads duplicates fastq mapping ids written 11 months ago by BioGeek • 120
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