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<prev • 171 results • page 1 of 6 • next >
8
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9 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.1 years ago by lwc628 • 200 • updated 5 days ago by m13113153781 • 0
5
votes
0
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128
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5 follow
0
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How to extract reads which contain specific sequence from fastq file
reads fastq extract written 22 days ago by hsu • 10 • updated 22 days ago by WouterDeCoster ♦ 39k
0
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0
answers
135
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0
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Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 5 weeks ago by Elizabeth • 20
0
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0
answers
141
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0
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Quast shows different reads count for the same fastq file?
reads fastq contig quast written 11 weeks ago by DanielC • 80
0
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0
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243
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0
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How to get gene counts with HTseq
reads htseq counts rna-seq written 3 months ago by Michel Edwar • 70
1
vote
1
answer
224
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1
answer
Transcript quantification using the reference transcriptome(gencode) and the raw RNA-Seq reads without mapping it to reference genome.
reads quantification transcript rna-seq sequencing written 3 months ago by Glory Basumata • 140 • updated 3 months ago by JC ♦ 8.0k
3
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1
answer
205
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1
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Find common reads between two bam files
reads bam sequencing written 3 months ago by yp19 • 20 • updated 3 months ago by Pierre Lindenbaum ♦ 121k
0
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1
answer
162
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1
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fastq reads cleaning
reads fastq cleaning written 3 months ago by blueskypie • 40
2
votes
1
answer
238
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1
answer
Percent reads mapped in Picard
reads next-generation sequencing picard mapping written 3 months ago by phylofun • 30
1
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0
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144
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0
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 4 months ago by mohammedtoufiq91 • 40
5
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4
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336
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6 follow
4
answers
Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq fastq files
reads fastq sequence rna-seq written 4 months ago by mohammedtoufiq91 • 40 • updated 4 months ago by chen • 1.9k
9
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3
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10k
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10 follow
3
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How to extract reads in a specific region from a BAM file and also their mates mapped elsewhere ?
reads bam mate written 5.0 years ago by thecuriousbiologist • 430 • updated 4 months ago by Pierre Lindenbaum ♦ 121k
5
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2
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276
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5 follow
2
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Extract read with high GC content from a bam file
reads gc content written 4 months ago by popescuiofelia • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 121k
0
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0
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134
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0
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MEGAN - no reads found
reads megan gui linux written 4 months ago by emilyc • 0
13
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3
answers
602
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6 follow
3
answers
STAR or Bowtie for small RNA seq?
reads mapping rna-seq sequencing written 4 months ago by max_19 • 100 • updated 4 months ago by Bastien Hervé ♦ 4.3k
4
votes
2
answers
366
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5 follow
2
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Remove/Delete unique reads from a DNA fasta file
fasta unique reads remove dna written 5 months ago by saanasum • 10 • updated 5 months ago by genomax ♦ 68k
1
vote
1
answer
393
views
1
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Number of passing clusters vs. number of read pairs vs. total number of reads
reads illumina flowcell written 5 months ago by AP • 90 • updated 5 months ago by genomax ♦ 68k
0
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0
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199
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0
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abyss-pe output after filtering reads
reads assembly sequencing written 5 months ago by max_19 • 100
4
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1
answer
499
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1
answer
Extracting Reads from paired end data in SAM file that map to a list of contig IDs
reads bam sequencing written 6 months ago by yp19 • 20
0
votes
0
answers
222
views
0
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Practices for mapping reads to De Novo metagenomic assembly
de novo assembly reads metagenomic megahit written 6 months ago by doron • 0
0
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0
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331
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0
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How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 6 months ago by DanielC • 80 • updated 6 months ago by WouterDeCoster ♦ 39k
0
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0
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336
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0
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diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
reads picard bam fastqc written 6 months ago by kk.mahsa • 100
2
votes
1
answer
490
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1
answer
GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 8 months ago by marongiu.luigi • 380 • updated 8 months ago by Pierre Lindenbaum ♦ 121k
5
votes
0
answers
467
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5 follow
0
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Remove duplicate lines based on specific columns
reads R intersect python written 8 months ago by dzisis1986 • 20 • updated 8 months ago by RamRS ♦ 22k
4
votes
2
answers
312
views
6 follow
2
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discrepancy between reads
reads bam igv deletion written 9 months ago by n.mekkes • 0 • updated 9 months ago by swbarnes2 ♦ 5.8k
1
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0
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477
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0
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Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 9 months ago by c.clarido • 50
4
votes
1
answer
346
views
1
answer
Number of reads in different alignments
sam file reads alignment written 9 months ago by marongiu.luigi • 380 • updated 9 months ago by RamRS ♦ 22k
9
votes
3
answers
2.4k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 6.2 years ago by siyu • 130 • updated 10 months ago by Biostar ♦♦ 20
3
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0
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830
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0
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Understanding subsampling with Samtools
reads samtools subsampling rna-seq seed written 10 months ago by m93 • 150
26
votes
8
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28k
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14 follow
8
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How to count fastq reads
reads sequence fastq next-gen written 4.2 years ago by Chenglin • 110 • updated 10 months ago by johnsonnathant • 80
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