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<prev • 205 results • page 1 of 7 • next >
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Getting all the genomic coordinates where RNA-seq reads are split within a given genomic interval in a bam file
reads cigar splicing bam rna-seq written 11 days ago by rubic • 200 • updated 11 days ago by Pierre Lindenbaum ♦ 133k
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163
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using samtools view without a chromosome
reads alignment samtools written 5 weeks ago by mayalkaul • 0
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191
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1
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fastq-dump returns I1 and R1 files instead of R1 and R2
reads fastq-dump question written 12 weeks ago by requiem_data • 0
1
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2
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184
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2
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Why does this 10x scRNA-seq data set have one read instead of two reads?
10x scrna-seq reads sra written 12 weeks ago by pomodoro_sinensis • 0 • updated 12 weeks ago by GenoMax ♦ 95k
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146
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see base quality from IGV
reads igv written 3 months ago by yliueagle • 230 • updated 3 months ago by ATpoint ♦ 44k
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180
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many read aligned to the same position but with different variants
reads duplicates alignment written 3 months ago by yliueagle • 230 • updated 3 months ago by GenoMax ♦ 95k
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177
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 4 months ago by Bardt9 • 0 • updated 3 months ago by Biostar ♦♦ 20
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124
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retrieve the properties of the reads on NCBI on the command line
reads assembly ncbi written 3 months ago by Chvatil • 50
1
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153
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0
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RNAseq more sequences than reads after mapping
reads mapping rna-seq written 3 months ago by avelarbio46 • 10
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2
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377
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2
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Why there are low assigned reads in featureCounts output and different outputs for quality checks?
reads alignment featurecounts qualimap rna-seq written 3 months ago by newbie • 90 • updated 3 months ago by rpolicastro ♦ 3.3k
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178
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Performing so-called "SNP confirmation" for reads assigned to their corresponding Antibiotic Resistance Genes (ARGs): suggestions?
arg reads metagenomics snp megares written 4 months ago by Macspider • 3.3k • updated 4 months ago by Biostar ♦♦ 20
1
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1
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260
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1
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Extract base information from aligned reads in a sam file
reads basepair sam written 5 months ago by yliueagle • 230
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252
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CRISPR/Cas9 screen analysis: reads R1 and R2 mixed
crispr screen reads illumina sequencing written 6 months ago by Swimming bird • 20
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168
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Setting Peak Cutoff Using Minimum # of Reads
reads h3k4me3 chip-seq histone written 6 months ago by Andrew Siladi • 0
1
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427
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1
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STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 13 months ago by spriyansh29 • 30
45
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9
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53k
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15 follow
9
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How to count fastq reads
reads sequence fastq next-gen written 5.8 years ago by Chenglin • 150 • updated 10 months ago by sbwiecko • 10
6
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3
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730
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3
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Downloading SRA data
reads sra metagenomics written 10 months ago by anabaena • 0 • updated 10 months ago by liorglic • 340
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4
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4
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Reads Simulation and Read Simulator
reads simulator simulation ngs written 4.8 years ago by midox • 260 • updated 11 months ago by onestop_data • 250
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0
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416
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5 follow
0
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TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
reads processing tin rin rseqc written 11 months ago by gnmcsbnfrmtcsclb • 30
2
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0
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305
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0
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Finding gene matches using sequence reads?
reads bowtie2 metagenomic written 11 months ago by anabaena • 0 • updated 11 months ago by Fatima • 890
1
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1
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298
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1
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Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene reads metagenomics tpm written 12 months ago by Hansen_869 • 20 • updated 12 months ago by tshtatland • 70
3
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1
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475
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1
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How do I know how much memory to use when piping to with BBMap suite (OutOfMemoryError)?
reads java bbmap memory written 13 months ago by O.rka • 230 • updated 13 months ago by h.mon ♦ 32k
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1
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776
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5 follow
1
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 2.9 years ago by BioGeek • 150 • updated 13 months ago by lagartija • 90
3
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1
answer
359
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1
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Access to SRA read from a specific genome assembly on NCBI
ncbi assembly reads written 13 months ago by Chvatil • 50
0
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1
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833
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1
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Difference between Pysam Pileup and Fetch
reads bam pysam pileup written 16 months ago by aalith • 10 • updated 14 months ago by castaway1990 • 0
6
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2
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587
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2
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Subset Fastq file from list of read numbers
reads fastq subset written 14 months ago by johnsonn573 • 0 • updated 14 months ago by Pierre Lindenbaum ♦ 133k
1
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1
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486
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1
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The Picard FilterSAM READ is throwing error
reads assembly picard rna-seq written 14 months ago by a.james • 210 • updated 14 months ago by Pierre Lindenbaum ♦ 133k
5
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1
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807
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1
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Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 14 months ago by SSK • 10 • updated 14 months ago by benformatics • 2.0k
1
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379
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1
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Base count NOT read count - Downsampling to specific number of bases not reads?
reads bases fastq downsample seqtk written 15 months ago by jnowacki • 70 • updated 15 months ago by GenoMax ♦ 95k
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1.5k
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0
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 7.5 years ago by Angel • 210 • updated 15 months ago by Biostar ♦♦ 20
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