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<prev • 162 results • page 1 of 6 • next >
5
votes
4
answers
184
views
6 follow
4
answers
Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq fastq files
reads fastq sequence rna-seq written 8 days ago by mohammedtoufiq91 • 0 • updated 5 days ago by chen • 1.8k
9
votes
3
answers
9.8k
views
10 follow
3
answers
How to extract reads in a specific region from a BAM file and also their mates mapped elsewhere ?
reads bam mate written 4.6 years ago by thecuriousbiologist • 430 • updated 8 days ago by Pierre Lindenbaum ♦ 116k
5
votes
2
answers
98
views
5 follow
2
answers
Extract read with high GC content from a bam file
reads gc content written 9 days ago by popescuiofelia • 10 • updated 9 days ago by Pierre Lindenbaum ♦ 116k
0
votes
0
answers
46
views
0
answers
MEGAN - no reads found
reads megan gui linux written 10 days ago by emilyc • 0
13
votes
3
answers
244
views
6 follow
3
answers
STAR or Bowtie for small RNA seq?
reads mapping rna-seq sequencing written 19 days ago by max_19 • 30 • updated 19 days ago by Bastien Hervé ♦ 3.3k
4
votes
2
answers
196
views
5 follow
2
answers
Remove/Delete unique reads from a DNA fasta file
fasta unique reads remove dna written 24 days ago by saanasum • 10 • updated 24 days ago by genomax ♦ 62k
1
vote
1
answer
119
views
1
answer
Number of passing clusters vs. number of read pairs vs. total number of reads
reads illumina flowcell written 29 days ago by AP • 90 • updated 29 days ago by genomax ♦ 62k
0
votes
0
answers
121
views
0
answers
abyss-pe output after filtering reads
reads assembly sequencing written 4 weeks ago by max_19 • 30
4
votes
1
answer
186
views
1
answer
Extracting Reads from paired end data in SAM file that map to a list of contig IDs
reads bam sequencing written 8 weeks ago by yl2019 • 10
0
votes
0
answers
128
views
0
answers
Practices for mapping reads to De Novo metagenomic assembly
de novo assembly reads metagenomic megahit written 8 weeks ago by doron • 0
0
votes
0
answers
206
views
0
answers
How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 10 weeks ago by DK • 80 • updated 10 weeks ago by WouterDeCoster ♦ 36k
0
votes
0
answers
131
views
0
answers
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
reads picard bam fastqc written 10 weeks ago by kk.mahsa • 80
2
votes
1
answer
247
views
1
answer
GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 4 months ago by marongiu.luigi • 360 • updated 4 months ago by Pierre Lindenbaum ♦ 116k
5
votes
0
answers
280
views
5 follow
0
answers
Remove duplicate lines based on specific columns
reads R intersect python written 4 months ago by dzisis1986 • 20 • updated 4 months ago by RamRS ♦ 20k
4
votes
2
answers
234
views
6 follow
2
answers
discrepancy between reads
reads bam igv deletion written 5 months ago by n.mekkes • 0 • updated 5 months ago by swbarnes2 ♦ 4.8k
1
vote
0
answers
299
views
0
answers
Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 5 months ago by c.clarido • 40
4
votes
1
answer
253
views
1
answer
Number of reads in different alignments
sam file reads alignment written 5 months ago by marongiu.luigi • 360 • updated 5 months ago by RamRS ♦ 20k
9
votes
3
answers
2.2k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 5.9 years ago by siyu • 130 • updated 5 months ago by Biostar ♦♦ 20
3
votes
0
answers
490
views
0
answers
Understanding subsampling with Samtools
reads samtools subsampling rna-seq seed written 5 months ago by m93 • 140
17
votes
8
answers
22k
views
11 follow
8
answers
How to count fastq reads
reads sequence fastq next-gen written 3.8 years ago by Chenglin • 90 • updated 6 months ago by johnsonnathant • 70
0
votes
1
answer
293
views
1
answer
Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 6 months ago by alongalor • 0
2
votes
0
answers
238
views
0
answers
Get the regions mapped by the same reads
reads bed bam multiple alignments sam written 6 months ago by Corentin • 230
2
votes
1
answer
508
views
1
answer
PacBio and ONT reads difference !
reads nanopore pacbio written 6 months ago by BioGeek • 140 • updated 6 months ago by h.mon ♦ 23k
54
votes
1
answer
45k
views
39 follow
1
answer
Number of mapped reads from BAM file
reads bam sam mapping written 3.8 years ago by Prakki Rama • 2.2k • updated 6 months ago by iraia.munoa • 50
0
votes
0
answers
188
views
0
answers
Is there any mapper to map the long/short reads against phased genome?
reads alignment mapper longreads phased written 8 months ago by BioGeek • 140
6
votes
2
answers
374
views
6 follow
2
answers
Blast many read sequences
reads alignment contamination blast written 8 months ago by zoegward • 50 • updated 8 months ago by biokoala ♦ 3.6k
1
vote
1
answer
329
views
1
answer
Software for Quality Check of reads
reads illumina quality check prinseq written 9 months ago by utkarsh.sood • 30 • updated 9 months ago by genomax ♦ 62k
1
vote
1
answer
182
views
1
answer
Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 9 months ago by deepti1rao • 20 • updated 9 months ago by toralmanvar • 750
1
vote
0
answers
352
views
0
answers
How to check if a read in a Bam file is paired or not?
reads paired reads bam sam single paired reads written 9 months ago by omariqbal2017 • 0
5
votes
2
answers
508
views
2
answers
What's Supplementary Reads?
reads alignment tool written 10 months ago by 2012secondseason • 10 • updated 10 months ago by Bastien Hervé ♦ 3.3k
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