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<prev • 201 results • page 1 of 7 • next >
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see base quality from IGV
reads igv written 8 hours ago by yliueagle • 220 • updated 8 hours ago by ATpoint ♦ 40k
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many read aligned to the same position but with different variants
reads duplicates alignment written 1 day ago by yliueagle • 220 • updated 12 hours ago by genomax ♦ 91k
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97
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 26 days ago by Bardt9 • 0 • updated 5 days ago by Biostar ♦♦ 20
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58
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retrieve the properties of the reads on NCBI on the command line
reads assembly ncbi written 6 days ago by Chvatil • 50
1
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89
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RNAseq more sequences than reads after mapping
reads mapping rna-seq written 20 days ago by avelarbio46 • 0
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196
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Why there are low assigned reads in featureCounts output and different outputs for quality checks?
reads alignment featurecounts qualimap rna-seq written 21 days ago by newbie • 90 • updated 21 days ago by rpolicastro • 2.0k
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127
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Performing so-called "SNP confirmation" for reads assigned to their corresponding Antibiotic Resistance Genes (ARGs): suggestions?
arg reads metagenomics snp megares written 5 weeks ago by Macspider • 3.2k • updated 4 weeks ago by Biostar ♦♦ 20
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1
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181
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1
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Extract base information from aligned reads in a sam file
reads basepair sam written 9 weeks ago by yliueagle • 220
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160
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CRISPR/Cas9 screen analysis: reads R1 and R2 mixed
crispr screen reads illumina sequencing written 3 months ago by Swimming bird • 20
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121
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Setting Peak Cutoff Using Minimum # of Reads
reads h3k4me3 chip-seq histone written 3 months ago by Andrew Siladi • 0
1
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338
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1
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STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 10 months ago by spriyansh29 • 30
44
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9
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49k
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15 follow
9
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How to count fastq reads
reads sequence fastq next-gen written 5.5 years ago by Chenglin • 140 • updated 6 months ago by sbwiecko • 10
6
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3
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555
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3
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Downloading SRA data
reads sra metagenomics written 7 months ago by anabaena • 0 • updated 7 months ago by liorglic • 340
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4
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3.0k
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4
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Reads Simulation and Read Simulator
reads simulator simulation ngs written 4.5 years ago by midox • 260 • updated 8 months ago by onestop_data • 260
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304
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5 follow
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TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
reads processing tin rin rseqc written 8 months ago by gnmcsbnfrmtcsclb • 30
2
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0
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239
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0
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Finding gene matches using sequence reads?
reads bowtie2 metagenomic written 8 months ago by anabaena • 0 • updated 8 months ago by Fatima • 720
1
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1
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250
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1
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Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene reads metagenomics tpm written 9 months ago by Hansen_869 • 20 • updated 9 months ago by tshtatland • 60
3
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1
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381
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1
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How do I know how much memory to use when piping to with BBMap suite (OutOfMemoryError)?
reads java bbmap memory written 10 months ago by O.rka • 210 • updated 10 months ago by h.mon ♦ 31k
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1
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709
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5 follow
1
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 2.6 years ago by BioGeek • 150 • updated 10 months ago by lagartija • 90
3
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1
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294
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1
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Access to SRA read from a specific genome assembly on NCBI
ncbi assembly reads written 10 months ago by Chvatil • 50
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1
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676
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1
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Difference between Pysam Pileup and Fetch
reads bam pysam pileup written 13 months ago by aalith • 10 • updated 10 months ago by castaway1990 • 0
6
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2
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490
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2
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Subset Fastq file from list of read numbers
reads fastq subset written 11 months ago by johnsonn573 • 0 • updated 11 months ago by Pierre Lindenbaum ♦ 131k
1
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1
answer
358
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1
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The Picard FilterSAM READ is throwing error
reads assembly picard rna-seq written 11 months ago by a.james • 210 • updated 11 months ago by Pierre Lindenbaum ♦ 131k
5
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1
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638
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1
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Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 11 months ago by SSK • 10 • updated 11 months ago by benformatics • 2.0k
1
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1
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314
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1
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Base count NOT read count - Downsampling to specific number of bases not reads?
reads bases fastq downsample seqtk written 12 months ago by jnowacki • 70 • updated 12 months ago by genomax ♦ 91k
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1.5k
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0
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 7.2 years ago by Angel • 210 • updated 12 months ago by Biostar ♦♦ 20
1
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0
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593
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0
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Low mapping rate for human NGS PE reads to hs37d5 genome
reads ngs hs37d5 human low mapping rate written 12 months ago by Ginsea Chen • 130
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615
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 12 months ago by SSK • 10
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2
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1.4k
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2
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Simulating Bacterial Population
reads population simulate bacterial written 4.3 years ago by Sama • 60 • updated 12 months ago by Biostar ♦♦ 20
0
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1
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362
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1
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Mapping NextSeq reads to reference genome in Galaxy
reads nextseq analysis raw data assembly written 12 months ago by WCG3 • 10
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