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<prev • 191 results • page 1 of 7 • next >
39
votes
9
answers
40k
views
15 follow
9
answers
How to count fastq reads
reads sequence fastq next-gen written 5.0 years ago by Chenglin • 130 • updated 7 days ago by sbwiecko • 10
6
votes
3
answers
202
views
3
answers
Downloading SRA data
reads sra metagenomics written 26 days ago by anabaena • 0 • updated 26 days ago by liorglic • 280
4
votes
4
answers
2.6k
views
4
answers
Reads Simulation and Read Simulator
reads simulator simulation ngs written 4.0 years ago by midox • 260 • updated 6 weeks ago by onestop_data • 200
1
vote
0
answers
88
views
0
answers
TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
reads processing tin rin rseqc written 7 weeks ago by gnmcsbnfrmtcsclb • 20
2
votes
0
answers
145
views
0
answers
Finding gene matches using sequence reads?
reads bowtie2 metagenomic written 7 weeks ago by anabaena • 0 • updated 7 weeks ago by Fatima • 560
1
vote
1
answer
151
views
1
answer
Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene reads metagenomics tpm written 11 weeks ago by Hansen_869 • 20 • updated 11 weeks ago by tshtatland • 60
3
votes
1
answer
193
views
1
answer
How do I know how much memory to use when piping to with BBMap suite (OutOfMemoryError)?
reads java bbmap memory written 3 months ago by O.rka • 170 • updated 3 months ago by h.mon ♦ 29k
1
vote
1
answer
569
views
5 follow
1
answer
How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 2.1 years ago by BioGeek • 140 • updated 3 months ago by lagartija • 80
1
vote
0
answers
161
views
0
answers
STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 3 months ago by spriyansh29 • 30
3
votes
1
answer
185
views
1
answer
Access to SRA read from a specific genome assembly on NCBI
ncbi assembly reads written 3 months ago by Darill • 40
0
votes
1
answer
311
views
1
answer
Difference between Pysam Pileup and Fetch
reads bam pysam pileup written 6 months ago by aalith • 10 • updated 4 months ago by castaway1990 • 0
6
votes
2
answers
295
views
2
answers
Subset Fastq file from list of read numbers
reads fastq subset written 4 months ago by johnsonn573 • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 127k
1
vote
1
answer
164
views
1
answer
The Picard FilterSAM READ is throwing error
reads assembly picard rna-seq written 4 months ago by a.james • 210 • updated 4 months ago by Pierre Lindenbaum ♦ 127k
5
votes
1
answer
293
views
1
answer
Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 5 months ago by SSK • 10 • updated 5 months ago by benformatics • 1.5k
1
vote
1
answer
217
views
1
answer
Base count NOT read count - Downsampling to specific number of bases not reads?
reads bases fastq downsample seqtk written 5 months ago by jnowacki • 70 • updated 5 months ago by genomax ♦ 80k
0
votes
0
answers
1.4k
views
0
answers
Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 6.7 years ago by Angel • 210 • updated 5 months ago by Biostar ♦♦ 20
1
vote
0
answers
282
views
0
answers
Low mapping rate for human NGS PE reads to hs37d5 genome
reads ngs hs37d5 human low mapping rate written 5 months ago by Ginsea Chen • 130
0
votes
0
answers
295
views
0
answers
Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 6 months ago by SSK • 10
7
votes
2
answers
1.3k
views
2
answers
Simulating Bacterial Population
reads population simulate bacterial written 3.8 years ago by Sama • 60 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
187
views
1
answer
Mapping NextSeq reads to reference genome in Galaxy
reads nextseq analysis raw data assembly written 6 months ago by WCG3 • 10
0
votes
1
answer
350
views
1
answer
concatenating FASTQ forward and reverse reads in Snakemake
reads fastq forward concatenate bash written 6 months ago by Hansen_869 • 20 • updated 6 months ago by Eric Lim • 1.6k
2
votes
0
answers
262
views
0
answers
In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 6 months ago by Rajinder Gupta • 10
2
votes
1
answer
266
views
1
answer
In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 6 months ago by Joseph Hughes • 2.8k • updated 6 months ago by h.mon ♦ 29k
0
votes
0
answers
1.3k
views
0
answers
Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 4.4 years ago by arif.at.iut • 0 • updated 7 months ago by Biostar ♦♦ 20
14
votes
3
answers
487
views
7 follow
3
answers
Read length for metagenomics analysis
gene assembly reads metagenomic written 8 months ago by magnuskerber • 10 • updated 8 months ago by Buffo • 1.8k
0
votes
0
answers
371
views
0
answers
Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 8 months ago by bz3 • 0
10
votes
4
answers
10k
views
13 follow
4
answers
How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.8 years ago by lwc628 • 210 • updated 9 months ago by m13113153781 • 0
5
votes
0
answers
829
views
5 follow
0
answers
How to extract reads which contain specific sequence from fastq file
reads fastq extract written 10 months ago by hsu • 10 • updated 10 months ago by WouterDeCoster ♦ 43k
0
votes
0
answers
283
views
0
answers
Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 10 months ago by Elizabeth • 20
0
votes
0
answers
351
views
0
answers
Quast shows different reads count for the same fastq file?
reads fastq contig quast written 12 months ago by DanielC • 120
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