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<prev • 179 results • page 1 of 6 • next >
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Trimmomatic; How to get only q20 < q < q30 reads
trimmomatic reads fastq ngs written 5 days ago by SSK • 0
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1.1k
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Simulating Bacterial Population
reads population simulate bacterial written 3.3 years ago by Sama • 60 • updated 9 days ago by Biostar ♦♦ 20
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68
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1
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Mapping NextSeq reads to reference genome in Galaxy
reads nextseq analysis raw data assembly written 15 days ago by WCG3 • 10
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91
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Difference between Pysam Pileup and Fetch
reads bam pysam pileup written 20 days ago by aalith • 0
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1
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143
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1
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concatenating FASTQ forward and reverse reads in Snakemake
reads fastq forward concatenate bash written 26 days ago by Hansen_869 • 0 • updated 25 days ago by Eric Lim • 1.4k
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In-sample and across samples normalized expression
reads data normalization fpkm rna-seq written 29 days ago by Rajinder Gupta • 10
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180
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In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
reads quality bbmap written 4 weeks ago by Joseph Hughes • 2.7k • updated 4 weeks ago by h.mon ♦ 27k
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 3.9 years ago by arif.at.iut • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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295
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5 follow
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Read length for metagenomics analysis
gene assembly reads metagenomic written 9 weeks ago by magnuskerber • 0 • updated 9 weeks ago by Buffo • 1.7k
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154
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 11 weeks ago by bz3 • 0
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13 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.4 years ago by lwc628 • 210 • updated 3 months ago by m13113153781 • 0
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340
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5 follow
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How to extract reads which contain specific sequence from fastq file
reads fastq extract written 4 months ago by hsu • 10 • updated 4 months ago by WouterDeCoster ♦ 41k
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206
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Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 5 months ago by Elizabeth • 20
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226
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Quast shows different reads count for the same fastq file?
reads fastq contig quast written 6 months ago by DanielC • 90
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425
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How to get gene counts with HTseq
reads htseq counts rna-seq written 7 months ago by Michel Edwar • 70
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334
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Transcript quantification using the reference transcriptome(gencode) and the raw RNA-Seq reads without mapping it to reference genome.
reads quantification transcript rna-seq sequencing written 7 months ago by Glory Basumata • 140 • updated 7 months ago by JC ♦ 8.7k
3
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374
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Find common reads between two bam files
reads bam sequencing written 7 months ago by yp19 • 50 • updated 7 months ago by Pierre Lindenbaum ♦ 123k
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232
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fastq reads cleaning
reads fastq cleaning written 7 months ago by blueskypie • 50
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1
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323
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1
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Percent reads mapped in Picard
reads next-generation sequencing picard mapping written 7 months ago by phylofun • 50
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203
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 7 months ago by mohammedtoufiq91 • 70
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450
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6 follow
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Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq fastq files
reads fastq sequence rna-seq written 8 months ago by mohammedtoufiq91 • 70 • updated 8 months ago by chen • 1.9k
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10 follow
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How to extract reads in a specific region from a BAM file and also their mates mapped elsewhere ?
reads bam mate written 5.3 years ago by thecuriousbiologist • 430 • updated 8 months ago by Pierre Lindenbaum ♦ 123k
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2
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448
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5 follow
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Extract read with high GC content from a bam file
reads gc content written 8 months ago by popescuiofelia • 10 • updated 8 months ago by Pierre Lindenbaum ♦ 123k
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190
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MEGAN - no reads found
reads megan gui linux written 8 months ago by emilyc • 10
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3
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1.0k
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6 follow
3
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STAR or Bowtie for small RNA seq?
reads mapping rna-seq sequencing written 8 months ago by max_19 • 120 • updated 8 months ago by Bastien Hervé ♦ 4.4k
4
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2
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479
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5 follow
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Remove/Delete unique reads from a DNA fasta file
fasta unique reads remove dna written 8 months ago by saanasum • 10 • updated 8 months ago by genomax ♦ 72k
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694
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Number of passing clusters vs. number of read pairs vs. total number of reads
reads illumina flowcell written 9 months ago by AP • 90 • updated 9 months ago by genomax ♦ 72k
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252
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abyss-pe output after filtering reads
reads assembly sequencing written 9 months ago by max_19 • 120
4
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673
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Extracting Reads from paired end data in SAM file that map to a list of contig IDs
reads bam sequencing written 9 months ago by yp19 • 50
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283
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Practices for mapping reads to De Novo metagenomic assembly
de novo assembly reads metagenomic megahit written 10 months ago by doron • 0
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