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Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?

1000 genomes reference allele checkvcf written 25 days ago by rodd • 40 • updated 7 days ago by chrchang523 ♦ 5.2k

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Where to download official reference and alternative alleles from 1000 Genomes?

1000 genomes reference allele plink written 16 months ago by Mr Locuace • 90 • updated 16 months ago by chrchang523 ♦ 5.2k

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Should I assume that the genotype of the 1000 Genomes project individuals in positions that are not in the vcf file, are homozygous for the reference allele?

vcf reference allele 1000 genomes project written 2.0 years ago by magda • 20

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How to create reference allele file in plink? (~50 SNPs)

impute2 reference allele plink written 4.0 years ago by eyb • 180

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