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<prev • 175 results • page 1 of 6 • next >
8
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2
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12 follow
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Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 19 months ago by celeste • 50 • updated 27 days ago by mcsimenc • 10
2
votes
1
answer
119
views
1
answer
Where can I find the reference files for the 1000 Genome project VCF data?
vcf 1000 genome reference written 5 weeks ago by caggtaagtat • 420 • updated 5 weeks ago by finswimmer ♦ 9.9k
1
vote
2
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137
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2
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Finding and changing a given position in hg19 ref fasta file
fasta reference hg19 written 9 weeks ago by cetin.m • 20
2
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2
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168
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2
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Link for pre-indexed BWA indices for human reference
genome reference bwa human index written 11 weeks ago by biokoala ♦ 3.6k
0
votes
1
answer
466
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1
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mapping rate of small rna-seq with different references
smrna-seq reference mapping rate written 11 months ago by woongjaej • 10 • updated 3 months ago by h.mon ♦ 23k
1
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3
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243
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3
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Reference based assembly
assembly reference written 4 months ago by deepti1rao • 20 • updated 3 months ago by jean.elbers • 550
4
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1
answer
284
views
1
answer
Current version of human reference Genome Assembly
genome assembly reference written 3 months ago by kspata • 40 • updated 3 months ago by vkkodali • 950
1
vote
3
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268
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5 follow
3
answers
How to use samtools tview goto with long reference sequence name
samtools goto reference tview written 4 months ago by quokka • 10 • updated 3 months ago by John Marshall • 1.5k
0
votes
0
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198
views
0
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Fetched gene from gff file shows similarity to other organism
gff reference written 4 months ago by shubhra.bhattacharya • 120
7
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0
answers
351
views
0
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convert fasta/gb to vcf
vcf file conversion reference written 4 months ago by marongiu.luigi • 360
6
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1
answer
496
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5 follow
1
answer
GRCh37.p13 download at NCBI FTP?
ncbi grch37 reference written 5 months ago by Marvin • 130 • updated 5 months ago by Kevin Blighe ♦ 37k
8
votes
1
answer
400
views
1
answer
How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?
genome fasta zebrafish reference daniorerio written 5 months ago by realnewbie • 10 • updated 5 months ago by WouterDeCoster ♦ 36k
10
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1
answer
388
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5 follow
1
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Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
paper forum reference written 6 months ago by ciemanek • 110 • updated 5 months ago by kate.kross90 • 0
12
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2
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239
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6 follow
2
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 6 months ago by Marvin • 130 • updated 6 months ago by Friederike ♦ 2.5k
1
vote
1
answer
245
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1
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Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 7 months ago by conifer_genomics_uk • 0 • updated 7 months ago by genomax ♦ 62k
0
votes
1
answer
226
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1
answer
Ambiguous position in SNPdb file and reference genome
ngs reference snp written 7 months ago by bwczech • 60 • updated 7 months ago by Pierre Lindenbaum ♦ 116k
0
votes
1
answer
333
views
1
answer
Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 8 months ago by ljw1001 • 0 • updated 8 months ago by Eric Lim • 1.2k
2
votes
1
answer
244
views
1
answer
How does variant callers deal with N in the reference sequence?
genome reference N variant call written 8 months ago by pyjiang2 • 30 • updated 8 months ago by JC ♦ 7.4k
4
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0
answers
422
views
0
answers
Help with rat RNA-Seq data with the HISAT-StringTie workflow
hisat rat reference rna-seq written 8 months ago by JackieMe • 30
0
votes
1
answer
439
views
1
answer
CNV calling using ExomeDepth
exomedepth reference cnv written 9 months ago by Nandini • 760 • updated 9 months ago by andrew.j.skelton73 ♦ 5.5k
4
votes
2
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558
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6 follow
2
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Recreate reference fasta from bam file
fasta bam reference written 9 months ago by Chris Miller ♦ 20k • updated 9 months ago by h.mon ♦ 23k
7
votes
4
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2.7k
views
5 follow
4
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Problems For Mapping Contigs Onto Reference
genome reference blat written 7.9 years ago by Plantae • 380 • updated 9 months ago by deepti1rao • 20
15
votes
1
answer
3.4k
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8 follow
1
answer
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
alleles minor reference risk major written 10 months ago by m93 • 140 • updated 10 months ago by Kevin Blighe ♦ 37k
6
votes
1
answer
365
views
1
answer
Difference between lower and upper case N in soft masked genome
genome masking reference written 10 months ago by guillaume.rbt • 530
1
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0
answers
288
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0
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Batch query reference nucleotide
genomic sequence reference snp written 10 months ago by jennagu • 0
1
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0
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447
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0
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Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 10 months ago by raquelgarza95 • 10
0
votes
0
answers
313
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0
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bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 11 months ago by shreyasibiswas88 • 30
2
votes
1
answer
367
views
1
answer
mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc reference mouse written 11 months ago by Nandini • 760 • updated 11 months ago by Pierre Lindenbaum ♦ 116k
1
vote
1
answer
451
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1
answer
Question: removing germline polymorphism for mouse sequencing data
germline polymorphism reference sequencing written 12 months ago by Jung-ho Kong • 0 • updated 12 months ago by Kevin Blighe ♦ 37k
1
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1
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1.1k
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1
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 12 months ago by sciencer • 70
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