Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: reference • reset
or   Classic search
<prev • 168 results • page 1 of 6 • next >
2
votes
0
answers
77
views
0
answers
GRCh37.p13 download at NCBI FTP?
ncbi grch37 reference written 20 hours ago by Marvin • 120
8
votes
1
answer
96
views
1
answer
How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?
genome fasta zebrafish reference daniorerio written 9 days ago by realnewbie • 10 • updated 9 days ago by WouterDeCoster ♦ 32k
10
votes
1
answer
238
views
5 follow
1
answer
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
paper forum reference written 4 weeks ago by ciemanek • 100 • updated 16 days ago by kate.kross90 • 0
1
vote
1
answer
143
views
1
answer
SNPeff: can I just use hg19?
snpeff reference written 29 days ago by Marvin • 120 • updated 29 days ago by h.mon ♦ 19k
12
votes
2
answers
138
views
6 follow
2
answers
why do bed files not contain information about the reference?
bed hg38 reference hg19 written 6 weeks ago by Marvin • 120 • updated 6 weeks ago by Friederike • 2.1k
1
vote
1
answer
117
views
1
answer
Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 8 weeks ago by conifer_genomics_uk • 0 • updated 8 weeks ago by genomax ♦ 55k
0
votes
1
answer
111
views
1
answer
Ambiguous position in SNPdb file and reference genome
ngs reference snp written 9 weeks ago by bwczech • 0 • updated 9 weeks ago by Pierre Lindenbaum ♦ 112k
0
votes
1
answer
193
views
1
answer
Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 12 weeks ago by ljw1001 • 0 • updated 12 weeks ago by Eric Lim • 960
2
votes
1
answer
167
views
1
answer
How does variant callers deal with N in the reference sequence?
genome reference N variant call written 3 months ago by pyjiang2 • 30 • updated 3 months ago by JC ♦ 6.8k
5
votes
0
answers
244
views
0
answers
Help with rat RNA-Seq data with the HISAT-StringTie workflow
hisat rat reference rna-seq written 3 months ago by JackieMe • 40
0
votes
1
answer
215
views
1
answer
CNV calling using ExomeDepth
exomedepth reference cnv written 4 months ago by Nandini • 660 • updated 4 months ago by andrew.j.skelton73 ♦ 5.3k
4
votes
2
answers
407
views
6 follow
2
answers
Recreate reference fasta from bam file
fasta bam reference written 4 months ago by Chris Miller ♦ 20k • updated 4 months ago by h.mon ♦ 19k
7
votes
4
answers
2.6k
views
5 follow
4
answers
Problems For Mapping Contigs Onto Reference
genome reference blat written 7.4 years ago by Plantae • 380 • updated 4 months ago by deepti1rao • 0
8
votes
1
answer
917
views
1
answer
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
alleles minor reference risk major written 5 months ago by m93 • 90 • updated 5 months ago by Kevin Blighe ♦ 28k
6
votes
1
answer
243
views
1
answer
Difference between lower and upper case N in soft masked genome
genome masking reference written 5 months ago by guillaume.rbt • 450
1
vote
0
answers
191
views
0
answers
Batch query reference nucleotide
genomic sequence reference snp written 5 months ago by jennagu • 0
1
vote
0
answers
215
views
0
answers
Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 5 months ago by raquelgarza95 • 10
0
votes
0
answers
235
views
0
answers
bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 6 months ago by shreyasibiswas88 • 30
2
votes
1
answer
249
views
1
answer
mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc reference mouse written 6 months ago by Nandini • 660 • updated 6 months ago by Pierre Lindenbaum ♦ 112k
0
votes
1
answer
257
views
1
answer
mapping rate of small rna-seq with different references
smrna-seq reference mapping rate written 6 months ago by woongjaej • 10 • updated 6 months ago by sjbasu • 30
1
vote
1
answer
316
views
1
answer
Question: removing germline polymorphism for mouse sequencing data
germline polymorphism reference sequencing written 7 months ago by Jung-ho Kong • 0 • updated 7 months ago by Kevin Blighe ♦ 28k
1
vote
1
answer
592
views
1
answer
How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 7 months ago by sciencer • 60
3
votes
1
answer
553
views
1
answer
hg19 exome reference and index
exome hg19 reference index written 7 months ago by genomics Newbie • 10 • updated 7 months ago by Kevin Blighe ♦ 28k
0
votes
1
answer
1.1k
views
1
answer
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 2.8 years ago by ngsgene • 350 • updated 9 months ago by Kevin Blighe ♦ 28k
2
votes
0
answers
497
views
0
answers
How do I apply a patch to hg38?
patch hg38 reference human reference written 10 months ago by imperialcommando117 • 0
3
votes
2
answers
609
views
2
answers
CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 11 months ago by serenabivona • 10
1
vote
2
answers
653
views
2
answers
Need help inserting a custom gene sequence into ref genome and GTF file
gene genome reference rna-seq sequencing written 13 months ago by maxwellb • 0
1
vote
2
answers
538
views
2
answers
Consensus fasta file with uncovered bases set to Ns
genome bed consensus reference fasta written 13 months ago by deepti1rao • 0 • updated 13 months ago by Matt Shirley ♦ 8.6k
3
votes
2
answers
1.0k
views
9 follow
2
answers
Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 14 months ago by celeste • 20 • updated 13 months ago by tjduncan • 190
0
votes
0
answers
341
views
0
answers
RepeatMasker: considering only the matches with a specific length
alignment length reference repeatmasker written 14 months ago by gabri • 40 • updated 13 months ago by Biostar ♦♦ 20
<prev • 168 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 2 minutes ago
  • United States, 4 minutes ago
  • Brazil, 5 minutes ago
  • Houston, TX, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 983 users visited in the last hour