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<prev • 139 results • page 1 of 5 • next >
6
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1
answer
134
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1
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HeLa reference fasta
reference hela hg19 written 4 days ago by Sergio Martínez Cuesta • 10
0
votes
0
answers
130
views
0
answers
Using cnvkit for targeted amplicon sequencing
cnvkit targeted amplicon sequencing reference cnv written 8 days ago by ingrid.schulman • 0
1
vote
0
answers
91
views
0
answers
Can I improve my de novo assembly with a reference genome?
de novo assembly genome reference pacbio written 21 days ago by cristian • 50
2
votes
2
answers
128
views
2
answers
Reference guided assembly of contigs
assembly tools bacteria contigs reference written 5 weeks ago by hman6.2.91 • 0
0
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0
answers
90
views
0
answers
How to build reference for an artificial reporter sequence in GATK?
gatk amplicon reference written 6 weeks ago by yinboz • 0
25
votes
4
answers
4.0k
views
10 follow
4
answers
Ucsc/Ensembl Bam Converter?
ensembl bam reference ucsc written 6.0 years ago by 2184687-1231-83- • 4.8k • updated 6 weeks ago by balwierz • 10
7
votes
3
answers
2.0k
views
3
answers
Genome Reference For Bam Files In Ensembl Vs Ucsc?
next-gen sequencing reference ensembl bam ucsc written 6.0 years ago by 2184687-1231-83- • 4.8k • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
131
views
0
answers
Difference in the following reference genomes, both from Broad Institute FTP?
assembly alignment reference written 10 weeks ago by ari.nazarian • 0
0
votes
0
answers
214
views
0
answers
Reference Transcriptome for hg19
salmon transcriptome reference rna-seq hg19 written 10 weeks ago by stefanos.bamopoulos • 30
1
vote
2
answers
176
views
2
answers
Best reference database for 16S soil datasets?
metagenomics reference 16s soil written 3 months ago by Lina F • 80 • updated 3 months ago by Denise - Open Targets • 3.9k
10
votes
2
answers
5.4k
views
6 follow
2
answers
When Aligning Mirna (Micro Rna) What Reference Is Better? (Whole Genome Or Mirbase)
alignment reference mirna written 6.6 years ago by Doctoroots • 730 • updated 4 months ago by enxxx23 • 160
0
votes
2
answers
631
views
2
answers
Between mm10.p4 and mm10, why the total sequence length different?
genome assembly mm10 reference mouse written 19 months ago by kenneth.jh.han • 0 • updated 7 months ago by Biostar ♦♦ 20
5
votes
1
answer
261
views
1
answer
Why does bcftools call show variants with genotype 0/0 ?
variant calling reference bcftools call genotype written 7 months ago by Macspider • 1.2k
0
votes
0
answers
253
views
0
answers
Inferring Local Ethnicity of the Reference Genome
population reference ethnicity inferrence written 9 months ago by anovak • 40
4
votes
1
answer
3.1k
views
5 follow
1
answer
Problems With Mirdeep2
reference hg19 written 4.5 years ago by pmuench • 120 • updated 10 months ago by gzl • 20
0
votes
3
answers
457
views
3
answers
which alignment tool and which reference I should choose for miRNA-seq data analysis ?
alignment reference mirna-seq rna-seq written 12 months ago by jimmy_zeng • 90
4
votes
1
answer
394
views
1
answer
new regions in GRCh38
grch37 grch38 reference human hg19 written 12 months ago by skanterakis • 50
0
votes
1
answer
459
views
1
answer
Does BWA (BWA-MEM) care about the identity and coverage of the mapped reads?
bwa-mem alignment reference mapping bwa written 13 months ago by culiu • 0 • updated 13 months ago by shaun • 80
1
vote
0
answers
374
views
0
answers
Mouse decoy assembly
mouse ngs reference written 14 months ago by russhh • 2.4k
0
votes
1
answer
534
views
1
answer
samtools mpeileup: extract SNPs between individuals only (discard SNPs betn individuals & reference)
samtools reference snp mpileup written 14 months ago by merodev • 30
5
votes
5
answers
1.0k
views
5
answers
Do I need to use hg19 or hg38 reference for performing variant calling analysis and RNAseq analysis?
rnaseq dnaseq reference snp written 15 months ago by bioinforesearchquestions • 80 • updated 15 months ago by Ashley • 0
8
votes
3
answers
2.5k
views
6 follow
3
answers
List Of Dbsnp Variants Where Reference Genome Has Minor Allele
exome reference dbsnp variant written 5.6 years ago by Ana Rodrigues Grant • 30 • updated 16 months ago by Biostar ♦♦ 20
7
votes
2
answers
2.9k
views
2
answers
Concatenate the chromosome files from hsa19 into a single FASTA file
reference mapping mirna written 2.8 years ago by Kato • 50 • updated 16 months ago by Louis • 120
0
votes
0
answers
582
views
0
answers
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 19 months ago by ngsgene • 350 • updated 18 months ago by Biostar ♦♦ 20
0
votes
0
answers
541
views
0
answers
How can I change the reference genome in a multiple alignment (maf format)
maf multiple alignment reference written 19 months ago by vasilislenis • 70
1
vote
1
answer
503
views
1
answer
BED reference for Pombe
bed reference pombe written 19 months ago by Parham • 1.3k • updated 19 months ago by Juke-34 • 960
2
votes
0
answers
822
views
0
answers
Mapping BAM/SAM file back to reference?!?!
bam reference sam bwa written 20 months ago by ab.tsubaki • 30
0
votes
1
answer
817
views
1
answer
Phred/Phrap pipeline starting with FASTA file of paired-end reads and using a reference sequence
fasta assembly reference phred phrap written 21 months ago by daniel.carbajo • 10 • updated 21 months ago by Brian Bushnell ♦ 12k
0
votes
0
answers
796
views
0
answers
chr20 length problem
gatk reference contig length written 21 months ago by waqasnayab • 110
10
votes
2
answers
3.2k
views
9 follow
2
answers
How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene?
pairwise alignment reference written 3.4 years ago by biostar • 130 • updated 21 months ago by Darked89 ♦ 4.1k
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