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349
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mapping rate of small rna-seq with different references
smrna-seq reference mapping rate written 8 months ago by woongjaej • 10 • updated 12 days ago by h.mon ♦ 21k
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3
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180
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3
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Reference based assembly
assembly reference written 6 weeks ago by deepti1rao • 20 • updated 15 days ago by jean.elbers • 450
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1
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142
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Current version of human reference Genome Assembly
genome assembly reference written 20 days ago by kspata • 40 • updated 20 days ago by vkkodali • 450
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3
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166
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5 follow
3
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How to use samtools tview goto with long reference sequence name
samtools goto reference tview written 4 weeks ago by quokka • 10 • updated 27 days ago by John Marshall • 1.4k
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124
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Fetched gene from gff file shows similarity to other organism
gff reference written 6 weeks ago by shubhra.bhattacharya • 70
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204
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convert fasta/gb to vcf
vcf file conversion reference written 7 weeks ago by marongiu.luigi • 340
3
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1
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278
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5 follow
1
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GRCh37.p13 download at NCBI FTP?
ncbi grch37 reference written 8 weeks ago by Marvin • 120 • updated 8 weeks ago by Kevin Blighe ♦ 32k
8
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1
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219
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1
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How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?
genome fasta zebrafish reference daniorerio written 10 weeks ago by realnewbie • 10 • updated 10 weeks ago by WouterDeCoster ♦ 34k
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312
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5 follow
1
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Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
paper forum reference written 3 months ago by ciemanek • 110 • updated 11 weeks ago by kate.kross90 • 0
12
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2
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182
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6 follow
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 3 months ago by Marvin • 120 • updated 3 months ago by Friederike • 2.3k
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1
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173
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1
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Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 4 months ago by conifer_genomics_uk • 0 • updated 4 months ago by genomax ♦ 58k
0
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1
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164
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1
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Ambiguous position in SNPdb file and reference genome
ngs reference snp written 4 months ago by bwczech • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 114k
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1
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253
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1
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Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 5 months ago by ljw1001 • 0 • updated 4 months ago by Eric Lim • 1.1k
2
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1
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198
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1
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How does variant callers deal with N in the reference sequence?
genome reference N variant call written 5 months ago by pyjiang2 • 30 • updated 5 months ago by JC ♦ 6.9k
5
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0
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320
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0
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Help with rat RNA-Seq data with the HISAT-StringTie workflow
hisat rat reference rna-seq written 5 months ago by JackieMe • 40
0
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1
answer
302
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1
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CNV calling using ExomeDepth
exomedepth reference cnv written 6 months ago by Nandini • 710 • updated 6 months ago by andrew.j.skelton73 ♦ 5.4k
4
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2
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465
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6 follow
2
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Recreate reference fasta from bam file
fasta bam reference written 6 months ago by Chris Miller ♦ 20k • updated 6 months ago by h.mon ♦ 21k
7
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4
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5 follow
4
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Problems For Mapping Contigs Onto Reference
genome reference blat written 7.6 years ago by Plantae • 380 • updated 6 months ago by deepti1rao • 20
10
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1
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1.8k
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7 follow
1
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Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
alleles minor reference risk major written 7 months ago by m93 • 100 • updated 7 months ago by Kevin Blighe ♦ 32k
6
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1
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288
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1
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Difference between lower and upper case N in soft masked genome
genome masking reference written 7 months ago by guillaume.rbt • 460
1
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0
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226
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Batch query reference nucleotide
genomic sequence reference snp written 7 months ago by jennagu • 0
1
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0
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297
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0
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Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 7 months ago by raquelgarza95 • 10
0
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0
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274
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bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 8 months ago by shreyasibiswas88 • 30
2
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1
answer
295
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1
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mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc reference mouse written 8 months ago by Nandini • 710 • updated 8 months ago by Pierre Lindenbaum ♦ 114k
1
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1
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368
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1
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Question: removing germline polymorphism for mouse sequencing data
germline polymorphism reference sequencing written 9 months ago by Jung-ho Kong • 0 • updated 9 months ago by Kevin Blighe ♦ 32k
1
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1
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839
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1
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 9 months ago by sciencer • 70
3
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1
answer
736
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1
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hg19 exome reference and index
exome hg19 reference index written 9 months ago by genomics Newbie • 10 • updated 9 months ago by Kevin Blighe ♦ 32k
0
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1
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1.2k
views
1
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Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 3.0 years ago by ngsgene • 350 • updated 11 months ago by Kevin Blighe ♦ 32k
2
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0
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567
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0
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How do I apply a patch to hg38?
patch hg38 reference human reference written 13 months ago by imperialcommando117 • 0
3
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2
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674
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2
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CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 13 months ago by serenabivona • 10
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