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<prev • 162 results • page 1 of 6 • next >
0
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1
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50
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1
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Ambiguous position in SNPdb file and reference genome
ngs reference snp written 2 days ago by bwczech • 0 • updated 2 days ago by Pierre Lindenbaum ♦ 110k
0
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1
answer
133
views
1
answer
Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 26 days ago by ljw1001 • 0 • updated 25 days ago by Eric Lim • 760
2
votes
1
answer
117
views
1
answer
How does variant callers deal with N in the reference sequence?
genome reference N variant call written 5 weeks ago by pyjiang2 • 20 • updated 5 weeks ago by JC ♦ 6.8k
5
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0
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173
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0
answers
Help with rat RNA-Seq data with the HISAT-StringTie workflow
hisat rat reference rna-seq written 7 weeks ago by JackieMe • 40
0
votes
1
answer
123
views
1
answer
CNV calling using ExomeDepth
exomedepth reference cnv written 9 weeks ago by Nandini • 640 • updated 9 weeks ago by andrew.j.skelton73 ♦ 5.1k
4
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2
answers
330
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6 follow
2
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Recreate reference fasta from bam file
fasta bam reference written 10 weeks ago by Chris Miller ♦ 20k • updated 10 weeks ago by h.mon ♦ 16k
7
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4
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2.5k
views
5 follow
4
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Problems For Mapping Contigs Onto Reference
genome reference blat written 7.3 years ago by Plantae • 380 • updated 11 weeks ago by deepti1rao • 0
7
votes
1
answer
392
views
1
answer
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
alleles minor reference risk major written 12 weeks ago by m93 • 40 • updated 12 weeks ago by Kevin Blighe ♦ 24k
6
votes
1
answer
163
views
1
answer
Difference between lower and upper case N in soft masked genome
genome masking reference written 3 months ago by guillaume.rbt • 450
1
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0
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134
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0
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Batch query reference nucleotide
genomic sequence reference snp written 3 months ago by jennagu • 0
1
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0
answers
159
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0
answers
Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 3 months ago by raquelgarza95 • 0
0
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0
answers
169
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0
answers
bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 4 months ago by shreyasibiswas88 • 30
2
votes
1
answer
186
views
1
answer
mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc reference mouse written 4 months ago by Nandini • 640 • updated 4 months ago by Pierre Lindenbaum ♦ 110k
0
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1
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188
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1
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mapping rate of small rna-seq with different references
smrna-seq reference mapping rate written 4 months ago by woongjaej • 10 • updated 4 months ago by sjbasu • 30
1
vote
1
answer
218
views
1
answer
Question: removing germline polymorphism for mouse sequencing data
germline polymorphism reference sequencing written 5 months ago by Jung-ho Kong • 0 • updated 5 months ago by Kevin Blighe ♦ 24k
1
vote
1
answer
405
views
1
answer
How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 5 months ago by sciencer • 60
3
votes
1
answer
387
views
1
answer
hg19 exome reference and index
exome hg19 reference index written 5 months ago by genomics Newbie • 10 • updated 5 months ago by Kevin Blighe ♦ 24k
0
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1
answer
996
views
1
answer
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 2.6 years ago by ngsgene • 350 • updated 7 months ago by Kevin Blighe ♦ 24k
2
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0
answers
416
views
0
answers
How do I apply a patch to hg38?
patch hg38 reference human reference written 8 months ago by imperialcommando117 • 0
3
votes
2
answers
525
views
2
answers
CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 9 months ago by serenabivona • 10
1
vote
2
answers
535
views
2
answers
Need help inserting a custom gene sequence into ref genome and GTF file
gene genome reference rna-seq sequencing written 11 months ago by maxwellb • 0
1
vote
2
answers
458
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2
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Consensus fasta file with uncovered bases set to Ns
genome bed consensus reference fasta written 11 months ago by deepti1rao • 0 • updated 11 months ago by Matt Shirley ♦ 8.4k
3
votes
2
answers
895
views
9 follow
2
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Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 12 months ago by celeste • 20 • updated 11 months ago by tjduncan • 170
0
votes
0
answers
299
views
0
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RepeatMasker: considering only the matches with a specific length
alignment length reference repeatmasker written 12 months ago by gabri • 30 • updated 11 months ago by Biostar ♦♦ 20
0
votes
2
answers
996
views
2
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Between mm10.p4 and mm10, why the total sequence length different?
genome assembly mm10 reference mouse written 2.7 years ago by kenneth.jh.han • 0 • updated 12 months ago by Biostar ♦♦ 20
0
votes
1
answer
340
views
1
answer
IGV: Show reference sequence?
reference igv written 12 months ago by Marvin • 90
2
votes
1
answer
656
views
1
answer
Using cnvkit for targeted amplicon sequencing
cnvkit targeted amplicon sequencing reference cnv written 13 months ago by ingrid.schulman • 0 • updated 12 months ago by Eric T. • 2.2k
6
votes
1
answer
509
views
1
answer
HeLa reference fasta
reference hela hg19 written 13 months ago by Sergio Martínez Cuesta • 50
1
vote
0
answers
536
views
0
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Can I improve my de novo assembly with a reference genome?
de novo assembly genome reference pacbio written 13 months ago by cristian • 110
2
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2
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1.0k
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2
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Reference guided assembly of contigs
assembly tools bacteria contigs reference written 14 months ago by hman6.2.91 • 0
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