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2
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77
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1
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Where can I find the reference files for the 1000 Genome project VCF data?
vcf 1000 genome reference written 10 days ago by caggtaagtat • 390 • updated 10 days ago by finswimmer ♦ 8.9k
1
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2
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105
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2
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Finding and changing a given position in hg19 ref fasta file
fasta reference hg19 written 4 weeks ago by cetin.m • 10
2
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2
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144
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2
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Link for pre-indexed BWA indices for human reference
genome reference bwa human index written 7 weeks ago by Vijay Lakhujani ♦ 3.5k
0
votes
1
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431
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1
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mapping rate of small rna-seq with different references
smrna-seq reference mapping rate written 10 months ago by woongjaej • 10 • updated 10 weeks ago by h.mon ♦ 22k
1
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3
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222
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3
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Reference based assembly
assembly reference written 3 months ago by deepti1rao • 20 • updated 10 weeks ago by jean.elbers • 470
4
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1
answer
230
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1
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Current version of human reference Genome Assembly
genome assembly reference written 11 weeks ago by kspata • 40 • updated 11 weeks ago by vkkodali • 870
1
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3
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231
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5 follow
3
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How to use samtools tview goto with long reference sequence name
samtools goto reference tview written 3 months ago by quokka • 10 • updated 12 weeks ago by John Marshall • 1.5k
0
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0
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180
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0
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Fetched gene from gff file shows similarity to other organism
gff reference written 3 months ago by shubhra.bhattacharya • 120
7
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0
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301
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0
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convert fasta/gb to vcf
vcf file conversion reference written 3 months ago by marongiu.luigi • 350
4
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1
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422
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5 follow
1
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GRCh37.p13 download at NCBI FTP?
ncbi grch37 reference written 4 months ago by Marvin • 120 • updated 4 months ago by Kevin Blighe ♦ 35k
8
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1
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329
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1
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How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?
genome fasta zebrafish reference daniorerio written 4 months ago by realnewbie • 10 • updated 4 months ago by WouterDeCoster ♦ 36k
10
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1
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364
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5 follow
1
answer
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
paper forum reference written 5 months ago by ciemanek • 110 • updated 4 months ago by kate.kross90 • 0
12
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2
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222
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6 follow
2
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 5 months ago by Marvin • 120 • updated 5 months ago by Friederike ♦ 2.4k
1
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1
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214
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1
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Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 6 months ago by conifer_genomics_uk • 0 • updated 6 months ago by genomax ♦ 60k
0
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1
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207
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1
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Ambiguous position in SNPdb file and reference genome
ngs reference snp written 6 months ago by bwczech • 40 • updated 6 months ago by Pierre Lindenbaum ♦ 116k
0
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1
answer
316
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1
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Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 7 months ago by ljw1001 • 0 • updated 7 months ago by Eric Lim • 1.2k
2
votes
1
answer
224
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1
answer
How does variant callers deal with N in the reference sequence?
genome reference N variant call written 7 months ago by pyjiang2 • 30 • updated 7 months ago by JC ♦ 7.1k
4
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0
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384
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0
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Help with rat RNA-Seq data with the HISAT-StringTie workflow
hisat rat reference rna-seq written 7 months ago by JackieMe • 30
0
votes
1
answer
396
views
1
answer
CNV calling using ExomeDepth
exomedepth reference cnv written 8 months ago by Nandini • 750 • updated 8 months ago by andrew.j.skelton73 ♦ 5.5k
4
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2
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521
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6 follow
2
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Recreate reference fasta from bam file
fasta bam reference written 8 months ago by Chris Miller ♦ 20k • updated 8 months ago by h.mon ♦ 22k
7
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4
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2.7k
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5 follow
4
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Problems For Mapping Contigs Onto Reference
genome reference blat written 7.8 years ago by Plantae • 380 • updated 8 months ago by deepti1rao • 20
12
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1
answer
2.8k
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7 follow
1
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Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
alleles minor reference risk major written 9 months ago by m93 • 130 • updated 9 months ago by Kevin Blighe ♦ 35k
6
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1
answer
334
views
1
answer
Difference between lower and upper case N in soft masked genome
genome masking reference written 9 months ago by guillaume.rbt • 490
1
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0
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269
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0
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Batch query reference nucleotide
genomic sequence reference snp written 9 months ago by jennagu • 0
1
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0
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386
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0
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Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 9 months ago by raquelgarza95 • 10
0
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0
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299
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0
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bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 10 months ago by shreyasibiswas88 • 30
2
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1
answer
341
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1
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mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc reference mouse written 10 months ago by Nandini • 750 • updated 10 months ago by Pierre Lindenbaum ♦ 116k
1
vote
1
answer
420
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1
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Question: removing germline polymorphism for mouse sequencing data
germline polymorphism reference sequencing written 11 months ago by Jung-ho Kong • 0 • updated 11 months ago by Kevin Blighe ♦ 35k
1
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1
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984
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1
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 11 months ago by sciencer • 70
3
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1
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873
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1
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hg19 exome reference and index
exome hg19 reference index written 11 months ago by genomics Newbie • 10 • updated 11 months ago by Kevin Blighe ♦ 35k
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