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<prev • 142 results • page 1 of 5 • next >
3
votes
2
answers
259
views
8 follow
2
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Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 5 weeks ago by celeste • 20 • updated 9 days ago by tjduncan • 0
0
votes
0
answers
111
views
0
answers
RepeatMasker: considering only the matches with a specific length
alignment length reference repeatmasker written 25 days ago by gabri • 10 • updated 17 days ago by Biostar ♦♦ 20
0
votes
2
answers
678
views
2
answers
Between mm10.p4 and mm10, why the total sequence length different?
genome assembly mm10 reference mouse written 21 months ago by kenneth.jh.han • 0 • updated 28 days ago by Biostar ♦♦ 20
0
votes
1
answer
112
views
1
answer
IGV: Show reference sequence?
reference igv written 5 weeks ago by Marvin • 90
2
votes
1
answer
240
views
1
answer
Using cnvkit for targeted amplicon sequencing
cnvkit targeted amplicon sequencing reference cnv written 8 weeks ago by ingrid.schulman • 0 • updated 7 weeks ago by Eric T. • 1.8k
6
votes
1
answer
191
views
1
answer
HeLa reference fasta
reference hela hg19 written 8 weeks ago by Sergio Martínez Cuesta • 10
1
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0
answers
134
views
0
answers
Can I improve my de novo assembly with a reference genome?
de novo assembly genome reference pacbio written 10 weeks ago by cristian • 70
2
votes
2
answers
201
views
2
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Reference guided assembly of contigs
assembly tools bacteria contigs reference written 12 weeks ago by hman6.2.91 • 0
0
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0
answers
119
views
0
answers
How to build reference for an artificial reporter sequence in GATK?
gatk amplicon reference written 3 months ago by yinboz • 0
25
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4
answers
4.1k
views
10 follow
4
answers
Ucsc/Ensembl Bam Converter?
ensembl bam reference ucsc written 6.1 years ago by 2184687-1231-83- • 4.8k • updated 3 months ago by balwierz • 10
7
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3
answers
2.1k
views
3
answers
Genome Reference For Bam Files In Ensembl Vs Ucsc?
next-gen sequencing reference ensembl bam ucsc written 6.2 years ago by 2184687-1231-83- • 4.8k • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
190
views
0
answers
Difference in the following reference genomes, both from Broad Institute FTP?
assembly alignment reference written 4 months ago by ari.nazarian • 0
0
votes
0
answers
327
views
0
answers
Reference Transcriptome for hg19
salmon transcriptome reference rna-seq hg19 written 4 months ago by stefanos.bamopoulos • 30
1
vote
2
answers
216
views
2
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Best reference database for 16S soil datasets?
metagenomics reference 16s soil written 4 months ago by Lina F • 100 • updated 4 months ago by Denise - Open Targets • 3.9k
10
votes
2
answers
5.5k
views
6 follow
2
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When Aligning Mirna (Micro Rna) What Reference Is Better? (Whole Genome Or Mirbase)
alignment reference mirna written 6.8 years ago by Doctoroots • 730 • updated 6 months ago by enxxx23 • 160
6
votes
1
answer
321
views
1
answer
Why does bcftools call show variants with genotype 0/0 ?
variant calling reference bcftools call genotype written 9 months ago by Macspider • 1.2k
0
votes
0
answers
288
views
0
answers
Inferring Local Ethnicity of the Reference Genome
population reference ethnicity inferrence written 10 months ago by anovak • 40
4
votes
1
answer
3.3k
views
5 follow
1
answer
Problems With Mirdeep2
reference hg19 written 4.7 years ago by pmuench • 120 • updated 11 months ago by gzl • 20
0
votes
3
answers
519
views
3
answers
which alignment tool and which reference I should choose for miRNA-seq data analysis ?
alignment reference mirna-seq rna-seq written 14 months ago by jimmy_zeng • 90
4
votes
1
answer
436
views
1
answer
new regions in GRCh38
grch37 grch38 reference human hg19 written 14 months ago by skanterakis • 50
0
votes
1
answer
508
views
1
answer
Does BWA (BWA-MEM) care about the identity and coverage of the mapped reads?
bwa-mem alignment reference mapping bwa written 14 months ago by culiu • 0 • updated 14 months ago by shaun • 80
1
vote
0
answers
411
views
0
answers
Mouse decoy assembly
mouse ngs reference written 15 months ago by russhh • 2.6k
0
votes
1
answer
592
views
1
answer
samtools mpeileup: extract SNPs between individuals only (discard SNPs betn individuals & reference)
samtools reference snp mpileup written 16 months ago by merodev • 30
5
votes
5
answers
1.1k
views
5
answers
Do I need to use hg19 or hg38 reference for performing variant calling analysis and RNAseq analysis?
rnaseq dnaseq reference snp written 17 months ago by bioinforesearchquestions • 80 • updated 17 months ago by Ashley • 0
8
votes
3
answers
2.5k
views
6 follow
3
answers
List Of Dbsnp Variants Where Reference Genome Has Minor Allele
exome reference dbsnp variant written 5.7 years ago by Ana Rodrigues Grant • 30 • updated 17 months ago by Biostar ♦♦ 20
7
votes
2
answers
3.1k
views
2
answers
Concatenate the chromosome files from hsa19 into a single FASTA file
reference mapping mirna written 2.9 years ago by Kato • 50 • updated 18 months ago by Louis • 120
0
votes
0
answers
623
views
0
answers
Impute2 Custom Reference Panel
impute2 imputation reference recombination map written 20 months ago by ngsgene • 350 • updated 20 months ago by Biostar ♦♦ 20
0
votes
0
answers
575
views
0
answers
How can I change the reference genome in a multiple alignment (maf format)
maf multiple alignment reference written 21 months ago by vasilislenis • 70
1
vote
1
answer
541
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1
answer
BED reference for Pombe
bed reference pombe written 21 months ago by Parham • 1.3k • updated 21 months ago by Juke-34 • 960
2
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0
answers
878
views
0
answers
Mapping BAM/SAM file back to reference?!?!
bam reference sam bwa written 22 months ago by ab.tsubaki • 30
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