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<prev • 27 results • page 1 of 1 • next >
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Having some regex problems capturing strings with special chars. Could use some help.
awk sed regex written 12 days ago by a.j.wilson0000 • 10 • updated 11 days ago by Jorge Amigo ♦ 12k
1
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1
answer
132
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1
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How to extract out specific information from files within a directory?
python grep regex written 20 days ago by deep771992chanda • 10 • updated 20 days ago by zx8754 ♦ 9.7k
1
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1
answer
179
views
1
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Python script for text matching
fasta python regex written 6 weeks ago by anasjamshed1994 • 20 • updated 6 weeks ago by fishgolden • 450
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0
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109
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0
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Searching for regex matching sequence upstream and downstream a BLAST hit
genome python microbial biopython regex written 5 months ago by piotrkoper86 • 0
1
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0
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178
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0
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Seqkit - change regex for parsing ID
duplicates database seqkit regex written 5 months ago by marlenejensen • 20
1
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3
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258
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5 follow
3
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regex for select dna sequence
fasta python regex programming dna written 7 months ago by loisveillat • 10 • updated 7 months ago by Istvan Albert ♦♦ 85k
0
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1
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159
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1
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Replace a special character with another one in a string using Linux regex
linux regex written 8 months ago by eDNAuRNA • 20
3
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1
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407
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1
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Splitting string in a column using character
regex sed snp awk written 19 months ago by sofie_carolina • 20 • updated 19 months ago by zx8754 ♦ 9.7k
6
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1
answer
926
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1
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How to extract organisms name from the headers in a multi-fasta file?
fasta header sed regex written 20 months ago by MB • 20 • updated 20 months ago by finswimmer ♦ 13k
8
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3
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393
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3
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Regular expression to extract mutations type
R regex written 21 months ago by banerjeeshayantan • 170 • updated 21 months ago by manuel.belmadani • 1.2k
11
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4
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753
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4
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Extract a word from inside the text
R awk regex written 23 months ago by mostafarafiepour • 80 • updated 23 months ago by cpad0112 ♦ 14k
5
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4
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776
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4
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Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex written 24 months ago by westin.kosater • 40 • updated 24 months ago by Joe ♦ 18k
15
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1
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690
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1
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Debugging a sed script to extract values from rows in .txt file
sed unix regex written 2.0 years ago by kristina.mahan • 100
16
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3
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1.7k
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10 follow
3
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Batch rename *fastq.gz files using regular expression
rename perl fastq regex written 2.3 years ago by Leonardo Normando • 60 • updated 2.3 years ago by cpad0112 ♦ 14k
9
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3
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1.6k
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3
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Any ideas on converting IUPAC ambiguity codes in a fasta file
fasta iupac regex perl bash written 2.7 years ago by SaltedPork • 110 • updated 2.7 years ago by st.ph.n • 2.5k
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903
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0
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obtain selected elements from refseq using awk and regex
awk refseq regex written 3.2 years ago by theoharis • 40
8
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1
answer
2.6k
views
5 follow
1
answer
Parse fasta header with regex in python
fasta python biopython regex written 3.2 years ago by David • 180 • updated 3.2 years ago by a.zielezinski ♦ 9.2k
3
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2
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1.5k
views
2
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Column Regex Find And Replace
text manipulation regex written 3.4 years ago by alizohaib7 • 10 • updated 3.4 years ago by shenwei356 ♦ 5.5k
3
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2
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1.8k
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5 follow
2
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Generate column names on the fly R
R regex written 3.5 years ago by Jack • 120 • updated 3.5 years ago by Charles Plessy • 2.7k
13
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2
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2.6k
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5 follow
2
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Converting Uniprot File to a Fasta File in Perl
fasta perl uniprot regex written 3.7 years ago by kingkajc1 • 0
0
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3
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944
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5 follow
3
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How to extract snp names?
python regex written 3.8 years ago by prathikkv_1992 • 10 • updated 3.8 years ago by WouterDeCoster ♦ 44k
1
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1.5k
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0
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How to iterate using regex over output of SeqIO -> using output of seq_record.seq as string to Regex over
seqio biopython regex written 4.0 years ago by zebudavid • 10
0
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2
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902
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2
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Regular expression problem while trying to interpolate variable as pattern in Python
python biopython regex written 4.3 years ago by uxue33 • 20 • updated 4.3 years ago by Damian Kao ♦ 15k
5
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1
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2.0k
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1
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awk : if length to a pattern at column 2 is less than 5
awk regex written 4.5 years ago by mbk0asis • 570 • updated 4.5 years ago by Jorge Amigo ♦ 12k
10
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6
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8.8k
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6
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Extracting specific FASTA sequences from a complex FASTA file
fasta python regex written 5.7 years ago by boileau • 0 • updated 5.7 years ago by barvazduck • 10
4
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1
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2.6k
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6 follow
1
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Is it possible using a regex in perl to include both accession number and the matched sequence when printing?
perl protein match regex written 6.5 years ago by agabali • 0 • updated 6.5 years ago by promise • 0
6
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1
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1.9k
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1
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In R, how do I apply regexes to specific parts of a string that contains a pattern?
R regex written 6.5 years ago by soosus • 10 • updated 6.5 years ago by Michael Dondrup ♦ 47k
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