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Showing: regex • reset
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3
votes
1
answer
276
views
1
answer
Splitting string in a column using character
regex sed snp awk written 8 months ago by sofie_carolina • 20 • updated 8 months ago by zx8754 ♦ 8.4k
6
votes
1
answer
446
views
1
answer
How to extract organisms name from the headers in a multi-fasta file?
fasta header sed regex written 8 months ago by MB • 20 • updated 8 months ago by finswimmer ♦ 12k
8
votes
3
answers
272
views
3
answers
Regular expression to extract mutations type
R regex written 10 months ago by banerjeeshayantan • 140 • updated 10 months ago by manuel.belmadani • 1.1k
11
votes
4
answers
551
views
4
answers
Extract a word from inside the text
R awk regex written 12 months ago by mostafarafiepour • 60 • updated 12 months ago by cpad0112 ♦ 12k
5
votes
4
answers
493
views
4
answers
Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex written 12 months ago by westin.kosater • 10 • updated 12 months ago by Joe ♦ 15k
15
votes
1
answer
500
views
1
answer
Debugging a sed script to extract values from rows in .txt file
sed unix regex written 13 months ago by kristina.mahan • 50
16
votes
3
answers
1.0k
views
10 follow
3
answers
Batch rename *fastq.gz files using regular expression
rename perl fastq regex written 17 months ago by Leonardo Normando • 60 • updated 17 months ago by cpad0112 ♦ 12k
9
votes
3
answers
1.0k
views
3
answers
Any ideas on converting IUPAC ambiguity codes in a fasta file
fasta iupac regex perl bash written 21 months ago by SaltedPork • 100 • updated 21 months ago by st.ph.n • 2.5k
0
votes
0
answers
725
views
0
answers
obtain selected elements from refseq using awk and regex
awk refseq regex written 2.2 years ago by theoharis • 20
7
votes
1
answer
1.7k
views
5 follow
1
answer
Parse fasta header with regex in python
fasta python biopython regex written 2.2 years ago by David • 160 • updated 2.2 years ago by a.zielezinski ♦ 8.9k
3
votes
2
answers
1.3k
views
2
answers
Column Regex Find And Replace
text manipulation regex written 2.4 years ago by alizohaib7 • 10 • updated 2.4 years ago by shenwei356 ♦ 4.9k
3
votes
2
answers
1.4k
views
5 follow
2
answers
Generate column names on the fly R
R regex written 2.6 years ago by Jack • 120 • updated 2.6 years ago by Charles Plessy • 2.7k
13
votes
2
answers
2.0k
views
5 follow
2
answers
Converting Uniprot File to a Fasta File in Perl
fasta perl uniprot regex written 2.7 years ago by kingkajc1 • 0
0
votes
3
answers
832
views
5 follow
3
answers
How to extract snp names?
python regex written 2.9 years ago by prathikkv_1992 • 0 • updated 2.9 years ago by WouterDeCoster ♦ 42k
1
vote
0
answers
1.1k
views
0
answers
How to iterate using regex over output of SeqIO -> using output of seq_record.seq as string to Regex over
seqio biopython regex written 3.0 years ago by zebudavid • 10
0
votes
2
answers
775
views
2
answers
Regular expression problem while trying to interpolate variable as pattern in Python
python biopython regex written 3.4 years ago by uxue33 • 20 • updated 3.4 years ago by Damian Kao ♦ 15k
5
votes
1
answer
1.7k
views
1
answer
awk : if length to a pattern at column 2 is less than 5
awk regex written 3.6 years ago by mbk0asis • 470 • updated 3.6 years ago by Jorge Amigo ♦ 11k
10
votes
6
answers
7.5k
views
6
answers
Extracting specific FASTA sequences from a complex FASTA file
fasta python regex written 4.7 years ago by boileau • 0 • updated 4.7 years ago by barvazduck • 10
4
votes
1
answer
2.4k
views
5 follow
1
answer
Is it possible using a regex in perl to include both accession number and the matched sequence when printing?
perl protein match regex written 5.5 years ago by agabali • 0 • updated 5.5 years ago by promise • 0
6
votes
1
answer
1.7k
views
1
answer
In R, how do I apply regexes to specific parts of a string that contains a pattern?
R regex written 5.6 years ago by soosus • 10 • updated 5.6 years ago by Michael Dondrup ♦ 46k
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