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4
votes
1
answer
236
views
1
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RepeatMasker data download
assembly repeatmasker ucsc written 7 months ago by devarora • 240 • updated 5 days ago by Biostar ♦♦ 20
0
votes
1
answer
181
views
1
answer
Build consensus sequences from repeat masker output
transposable elements repeatmasker written 4 months ago by Amaranta Remedios • 10 • updated 5 weeks ago by bioinfo • 0
1
vote
0
answers
148
views
0
answers
Fasta file of repeats to mask
repeatmasker written 6 months ago by taiwoashittu • 0 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
141
views
0
answers
repeatmasker .out files of Mus_musculus.GRCm38.dna_rm
repeatmasker mus_musculus.grcm38 written 4 months ago by toyo • 0
0
votes
0
answers
230
views
0
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Maker Failed while doing repeat masking
annotation maker repeatmasker repbase written 6 months ago by jamie.pike • 60
0
votes
0
answers
212
views
0
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Repeatmodeler keeps dying
software error repeatmasker written 7 months ago by eennadi • 0 • updated 7 months ago by zx8754 ♦ 9.7k
0
votes
0
answers
134
views
0
answers
Choosing the directory of .out file of Repeat Masker
output directory repeatmasker written 8 months ago by manousid • 0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
177
views
1
answer
RepeatMasker: alignment sometimes doesn't fit
ssearch repeats alignment cross_match repeatmasker written 8 months ago by Ondřej Moravčík • 0 • updated 8 months ago by devarora • 240
0
votes
1
answer
1.9k
views
1
answer
How to run RepeatMasker only with my own library?
repeatmasker library written 4.6 years ago by loczi94 • 0 • updated 10 months ago by bioinfo • 0
1
vote
0
answers
645
views
0
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Maker (Gene annotation) RepeatMasker error
gene annotation repeatmasker maker written 14 months ago by ricardoguerreiro2121 • 60
0
votes
1
answer
639
views
1
answer
How to mask all repeats and low complexity regions using RepeatMasker?
repeatmasker written 15 months ago by zwz110 • 0 • updated 15 months ago by 2nelly • 220
1
vote
1
answer
3.6k
views
8 follow
1
answer
Ncbi-Blast+ Version 2.2.23 'Make' Error
blast error repeatmasker written 8.6 years ago by Heidi • 0 • updated 15 months ago by abhijit.synl • 60
0
votes
0
answers
545
views
0
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error invoking makeblastdb
genome repeatmasker written 17 months ago by SeaStar • 30 • updated 15 months ago by Biostar ♦♦ 20
3
votes
1
answer
995
views
1
answer
repeatmasker species setting
genome repeatmasker written 17 months ago by Chironex • 20 • updated 17 months ago by Juke34 • 4.8k
0
votes
0
answers
240
views
0
answers
RepeatMasker database differences between versions.
opensource libraries repeatmasker repbase written 17 months ago by E • 0 • updated 17 months ago by WouterDeCoster ♦ 44k
5
votes
2
answers
3.2k
views
7 follow
2
answers
Missing or disappearing output RepeatMasker
makeblastdb repeatmasker written 6.4 years ago by mtollis • 30 • updated 18 months ago by gbdias • 90
0
votes
0
answers
3.1k
views
0
answers
Repeatmasker Crashes Before End Of Run With "Can'T Fork..."
makeblastdb repeats alignment repeatmasker blast written 8.9 years ago by User 9996 • 810 • updated 18 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.2k
views
1
answer
Error in repeatmodeler consensi file output
repeat modeler repeat masker repeatmasker written 2.2 years ago by ngs_new_user • 0 • updated 18 months ago by svitlana.lukicheva • 10
0
votes
1
answer
795
views
1
answer
error installation rmblast
blast repeatmasker written 19 months ago by Chironex • 20 • updated 19 months ago by ATpoint ♦ 40k
0
votes
0
answers
584
views
0
answers
RepeatModeler run error troubleshooting
builddatabase blastdb repeatmodeler repeatmasker written 19 months ago by Anand Rao • 320
0
votes
1
answer
389
views
1
answer
Solved: RepeatMasker Output disappears - no output
repeatmasker written 20 months ago by katerinapargana • 0
0
votes
0
answers
289
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0
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Genome Annotations? RepeatMasker class/family? Regulation?
annotation ngs rna-seq repeatmasker written 20 months ago by Susmita Mandal • 70
12
votes
2
answers
6.1k
views
8 follow
2
answers
Repeatmasker, Can't locate Text/Soundex.pm
repeatmasker written 3.2 years ago by qwzhang0601 • 70 • updated 20 months ago by virginia.s.markham • 60
0
votes
0
answers
1.3k
views
0
answers
Parsing RepeatMasker Output Files
fasta repeatmasker written 21 months ago by gtasource • 60
1
vote
0
answers
622
views
0
answers
How can I get Kimura distances for individual loci from my align.fa file from RepeatMasker
repeatmasker written 23 months ago by a.rex • 240 • updated 22 months ago by Biostar ♦♦ 20
0
votes
1
answer
2.1k
views
1
answer
RepeatMasker Library Help
repeatmasker library repbase written 22 months ago by chris.bonner • 0
0
votes
1
answer
1.4k
views
1
answer
Problems with Repeatmasker
software error repeatmasker written 3.5 years ago by ccanchaya • 0 • updated 23 months ago by transposable.element • 0
5
votes
1
answer
657
views
1
answer
guidance for communication online seach engine with python or R script?
python rna-seq online search engine repeatmasker written 2.6 years ago by boaty • 110
2
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0
answers
802
views
0
answers
Mapping to repeat consensus sequences?
repeatmodeler repeatmasker written 2.0 years ago by a.rex • 240
2
votes
1
answer
1.4k
views
1
answer
Annotation of repeatative elements
censor repeatmasker repbase written 4.1 years ago by Rahul • 30 • updated 2.1 years ago by zx8754 ♦ 9.7k
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