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2
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How to remove repeats on galaxy
alignment repeats galaxy written 17 days ago by pt.taklifi • 60
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1
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1.3k
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1
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Primer design to do qPCR on repetitive elements
repeats repetitive elements qpcr written 3.0 years ago by Gema Sanz • 80 • updated 3 months ago by Biostar ♦♦ 20
2
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2
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198
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2
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Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/ come from?
golden path repeats written 4 months ago by curious • 470
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1
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213
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1
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RepeatMasker: alignment sometimes doesn't fit
ssearch repeats alignment cross_match repeatmasker written 11 months ago by Ondřej Moravčík • 0 • updated 11 months ago by devarora • 300
6
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8
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4.6k
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17 follow
8
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Edgeredef Failed When Running Repeatmodeler
repeats error written 9.9 years ago by Daniel Standage ♦ 4.0k • updated 12 months ago by devarora • 300
6
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1
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346
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1
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Detect repeats problematic for PCR
repeats prc written 15 months ago by mschmid • 160
0
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1
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566
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1
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Column explanation for repeat database from UCSC
repeats rmsk ucsc written 18 months ago by Louis Kok • 20 • updated 18 months ago by finswimmer ♦ 14k
6
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3
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3.5k
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3
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How To Find Repeat Expansion Using Exome/Genome Sequencing Data?
repeats written 8.2 years ago by michealsmith • 760 • updated 19 months ago by niuyw • 30
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366
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0
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Finding repeats in proteins
software repeats finder motif written 20 months ago by newacclol • 10 • updated 20 months ago by _r_am ♦ 32k
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3.1k
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0
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Repeatmasker Crashes Before End Of Run With "Can'T Fork..."
makeblastdb repeats alignment repeatmasker blast written 9.1 years ago by User 9996 • 810 • updated 21 months ago by Biostar ♦♦ 20
0
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458
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Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
fasta repeats bam blastx rna-seq written 2.0 years ago by pauli.pauli • 0 • updated 2.0 years ago by _r_am ♦ 32k
2
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1
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1.9k
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1
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Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 5.5 years ago by Leszek ♦ 4.1k • updated 2.1 years ago by Biostar ♦♦ 20
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1
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472
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1
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Using repeat region filter post QC
exome filter ngs repeats written 2.2 years ago by zx8754 ♦ 9.9k • updated 2.2 years ago by Pierre Lindenbaum ♦ 133k
24
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5
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11k
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10 follow
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Where Can I Find A Good Database Of The Repeat Regions Of The Human Genome ?
genome repeats database human written 9.4 years ago by Stephwen • 140 • updated 2.2 years ago by Charles Warden ♦ 8.0k
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1.6k
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0
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Masking repeats in your alignment
genome repeats sequencing written 3.7 years ago by biogirl • 190 • updated 2.3 years ago by Biostar ♦♦ 20
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1
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1.7k
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1
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Illegal Division by zero
perl transposable elements repeats written 2.4 years ago by sicat.paolo20 • 30 • updated 2.4 years ago by Michael Dondrup ♦ 48k
8
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2
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4.1k
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2
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Instaling Reas Repeat Finding
repeats next-gen sequencing written 10.8 years ago by Darked89 ♦ 4.2k • updated 2.4 years ago by _r_am ♦ 32k
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1
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1.7k
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1
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Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 3.5 years ago by qwzhang0601 • 70 • updated 2.4 years ago by Charles Warden ♦ 8.0k
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1
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2.0k
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1
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How to annotate repeats?
sine annotation repeats line normalization written 2.8 years ago by Zee_S • 60 • updated 2.8 years ago by Beuss • 120
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1.6k
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read counts for RNA-seq analysis of repeat elements
repeats rna-seq written 2.8 years ago by qwzhang0601 • 70
1
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1
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560
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1
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Excluding intervals with repeats
bed repeats masking written 2.9 years ago by rbronste • 370
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1
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1.0k
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1
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Coverage Estimates for Masked Genome
assembly repeats masked written 4.2 years ago by Magpie101 • 0 • updated 3.3 years ago by Biostar ♦♦ 20
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1
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1.8k
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1
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Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human written 7.8 years ago by 14134125465346445 • 3.5k • updated 3.3 years ago by Biostar ♦♦ 20
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1.2k
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0
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 3.4 years ago by rbronste • 370
0
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861
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Compare repeat elelemts among species
repeats repeatmasker written 3.5 years ago by qwzhang0601 • 70 • updated 3.5 years ago by GenoMax ♦ 95k
1
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1
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1.8k
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1
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how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 3.5 years ago by kk.mahsa • 120
0
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934
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1
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get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 3.6 years ago by dabid • 0 • updated 3.6 years ago by Jean-Karim Heriche ♦ 24k
1
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1
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1.5k
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1
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 4.0 years ago by ron.eitan • 0 • updated 3.7 years ago by k.balaji93 • 10
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1.9k
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0
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Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 3.8 years ago by veronicaschroeder78 • 110
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1.5k
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0
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Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 3.9 years ago by Mike • 40
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