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7
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1
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151
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Illegal Division by zero
perl transposable elements repeats written 4 days ago by sicat.paolo20 • 20 • updated 3 days ago by Michael Dondrup ♦ 44k
8
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2
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3.5k
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2
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Instaling Reas Repeat Finding
repeats next-gen sequencing written 8.4 years ago by Darked89 ♦ 4.2k • updated 15 days ago by RamRS ♦ 17k
0
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1
answer
679
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1
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Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 13 months ago by qwzhang0601 • 60 • updated 4 weeks ago by Charles Warden ♦ 5.2k
6
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7
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3.0k
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15 follow
7
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Edgeredef Failed When Running Repeatmodeler
repeats error written 7.6 years ago by Daniel Standage ♦ 3.8k • updated 6 weeks ago by bioinfo17 • 10
7
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1
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270
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1
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How to annotate repeats?
sine annotation repeats line normalization written 5 months ago by Zee_S • 20 • updated 5 months ago by Beuss • 100
0
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0
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350
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0
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read counts for RNA-seq analysis of repeat elements
repeats rna-seq written 5 months ago by qwzhang0601 • 60
1
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1
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213
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1
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Excluding intervals with repeats
bed repeats masking written 6 months ago by rbronste • 170
1
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1
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408
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1
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Primer design to do qPCR on repetitive elements
repeats repetitive elements qpcr written 8 months ago by Gema Sanz • 50 • updated 8 months ago by trausch • 1.1k
1
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1
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656
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1
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Coverage Estimates for Masked Genome
assembly repeats masked written 22 months ago by Magpie101 • 0 • updated 11 months ago by Biostar ♦♦ 20
2
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1
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1.5k
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1
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Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human written 5.5 years ago by 14134125465346445 • 3.4k • updated 12 months ago by Biostar ♦♦ 20
1
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0
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462
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0
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 12 months ago by rbronste • 170
0
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0
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412
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0
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Compare repeat elelemts among species
repeats repeatmasker written 13 months ago by qwzhang0601 • 60 • updated 13 months ago by genomax ♦ 55k
1
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1
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641
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1
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how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 13 months ago by kk.mahsa • 70
0
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1
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520
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1
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get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 15 months ago by dabid • 0 • updated 15 months ago by Jean-Karim Heriche ♦ 16k
0
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0
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547
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0
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Masking repeats in your alignment
genome repeats sequencing written 16 months ago by biogirl • 140
1
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1
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719
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1
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 19 months ago by ron.eitan • 0 • updated 16 months ago by k.balaji93 • 10
0
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0
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782
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0
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Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 17 months ago by veronicaschroeder78 • 100
0
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0
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611
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0
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Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 18 months ago by Mike • 30
2
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1
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1.5k
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1
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Detecting Variants near repeats
vcf repeats bam freebayes written 4.3 years ago by Adrian Pelin • 2.2k • updated 18 months ago by Macspider • 2.5k
6
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1
answer
625
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1
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Quantification of repeats expression
ngs repeats rna-seq written 20 months ago by valerie • 50 • updated 20 months ago by Constantine • 210
10
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5
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5.2k
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9 follow
5
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How To Mask Repeats In Ngs Data.
repeats next-gen written 6.3 years ago by Daniel • 40 • updated 2.1 years ago by doctor.dee005 • 130
0
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0
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719
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0
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Alignment of repeat sequences with Bowtie2
bowtie2 repeats alignment written 2.2 years ago by Bo Sim • 0
0
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1
answer
940
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1
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How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
genome assembly repeats repeatmasker ucsc written 2.3 years ago by M K • 390 • updated 2.3 years ago by Emily_Ensembl ♦ 15k
3
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0
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1.6k
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0
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Better strategies for repeat masking?
annotation repeats repeatmasker written 2.6 years ago by Philipp Bayer ♦ 5.6k
0
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1
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1.0k
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1
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Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 2.8 years ago by Ginsea Chen • 120 • updated 2.7 years ago by abascalfederico • 1.0k
5
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2
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1.0k
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2
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How to obtain and compare genomic coordinates from RepeatMasker output?
genome browser repeats repeatmasker gbrowse written 2.9 years ago by gbdias • 40
0
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0
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944
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0
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Inferring most probable integer copy number (repeat count) of contigs of a draft genome
copy numbers repeats contigs draft genome written 3.2 years ago by misaghb • 20 • updated 3.0 years ago by Biostar ♦♦ 20
3
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1
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1.2k
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1
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Identification of retrotransposons in large genomes
genome repeats retrotransposons identification written 3.1 years ago by Leszek ♦ 3.9k
2
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1
answer
1.3k
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1
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Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 3.2 years ago by Leszek ♦ 3.9k • updated 3.2 years ago by Pierre Lindenbaum ♦ 112k
3
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1
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2.8k
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1
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Getting A List Of Satellite Repeats As Bed File From Ucsc [Repeatmasker]
repeats mysql repeatmasker written 6.1 years ago by Sukhdeep Singh ♦ 9.4k • updated 4.2 years ago by Biostar ♦♦ 20
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