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<prev • 79 results • page 1 of 3 • next >
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Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
fasta repeats bam blastx rna-seq written 9 weeks ago by pauli.pauli • 0 • updated 9 weeks ago by RamRS ♦ 20k
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Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 3.6 years ago by Leszek ♦ 4.0k • updated 9 weeks ago by Biostar ♦♦ 20
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149
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Using repeat region filter post QC
exome filter ngs repeats written 4 months ago by zx8754 ♦ 6.7k • updated 4 months ago by Pierre Lindenbaum ♦ 117k
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10 follow
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Where Can I Find A Good Database Of The Repeat Regions Of The Human Genome ?
genome repeats database human written 7.6 years ago by Stephwen • 140 • updated 4 months ago by Charles Warden ♦ 6.4k
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Masking repeats in your alignment
genome repeats sequencing written 22 months ago by biogirl • 160 • updated 5 months ago by Biostar ♦♦ 20
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Illegal Division by zero
perl transposable elements repeats written 6 months ago by sicat.paolo20 • 30 • updated 6 months ago by Michael Dondrup ♦ 45k
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Instaling Reas Repeat Finding
repeats next-gen sequencing written 8.9 years ago by Darked89 ♦ 4.2k • updated 6 months ago by RamRS ♦ 20k
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Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 19 months ago by qwzhang0601 • 60 • updated 6 months ago by Charles Warden ♦ 6.4k
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15 follow
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Edgeredef Failed When Running Repeatmodeler
repeats error written 8.1 years ago by Daniel Standage ♦ 3.8k • updated 7 months ago by bioinfo17 • 30
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How to annotate repeats?
sine annotation repeats line normalization written 11 months ago by Zee_S • 20 • updated 11 months ago by Beuss • 100
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read counts for RNA-seq analysis of repeat elements
repeats rna-seq written 11 months ago by qwzhang0601 • 60
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Excluding intervals with repeats
bed repeats masking written 12 months ago by rbronste • 230
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Primer design to do qPCR on repetitive elements
repeats repetitive elements qpcr written 14 months ago by Gema Sanz • 50 • updated 14 months ago by trausch • 1.2k
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Coverage Estimates for Masked Genome
assembly repeats masked written 2.4 years ago by Magpie101 • 0 • updated 16 months ago by Biostar ♦♦ 20
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Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human written 6.0 years ago by 14134125465346445 • 3.4k • updated 17 months ago by Biostar ♦♦ 20
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 18 months ago by rbronste • 230
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Compare repeat elelemts among species
repeats repeatmasker written 19 months ago by qwzhang0601 • 60 • updated 19 months ago by genomax ♦ 63k
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how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 19 months ago by kk.mahsa • 100
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get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 21 months ago by dabid • 0 • updated 21 months ago by Jean-Karim Heriche ♦ 18k
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 2.1 years ago by ron.eitan • 0 • updated 22 months ago by k.balaji93 • 10
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Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 23 months ago by veronicaschroeder78 • 110
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Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 2.0 years ago by Mike • 30
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Detecting Variants near repeats
vcf repeats bam freebayes written 4.8 years ago by Adrian Pelin • 2.2k • updated 2.0 years ago by Macspider • 2.8k
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Quantification of repeats expression
ngs repeats rna-seq written 2.1 years ago by valerie • 60 • updated 2.1 years ago by Constantine • 220
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10 follow
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How To Mask Repeats In Ngs Data.
repeats next-gen written 6.7 years ago by Daniel • 40 • updated 2.6 years ago by Dattatray Mongad • 260
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Alignment of repeat sequences with Bowtie2
bowtie2 repeats alignment written 2.7 years ago by Bo Sim • 0
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How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
genome assembly repeats repeatmasker ucsc written 2.8 years ago by M K • 460 • updated 2.8 years ago by Emily_Ensembl ♦ 17k
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Better strategies for repeat masking?
annotation repeats repeatmasker written 3.1 years ago by Philipp Bayer ♦ 6.0k
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Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 3.3 years ago by Ginsea Chen • 120 • updated 3.2 years ago by abascalfederico • 1.1k
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How to obtain and compare genomic coordinates from RepeatMasker output?
genome browser repeats repeatmasker gbrowse written 3.4 years ago by gbdias • 60
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