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Showing: repeats • reset
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<prev • 72 results • page 1 of 3 • next >
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 17 days ago by rbronste • 140
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170
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Compare repeat elelemts among species
repeats repeatmasker written 6 weeks ago by qwzhang0601 • 50 • updated 6 weeks ago by genomax ♦ 33k
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155
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Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 6 weeks ago by qwzhang0601 • 50
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209
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how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 6 weeks ago by kk.mahsa • 40
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233
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get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 3 months ago by dabid • 0 • updated 3 months ago by Jean-Karim Heriche ♦ 13k
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177
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Masking repeats in your alignment
genome repeats sequencing written 4 months ago by biogirl • 140
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 7 months ago by ron.eitan • 0 • updated 4 months ago by k.balaji93 • 10
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263
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Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 5 months ago by veronicaschroeder78 • 100
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202
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Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 6 months ago by Mike • 30
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1
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Detecting Variants near repeats
vcf repeats bam freebayes written 3.3 years ago by Adrian Pelin • 2.0k • updated 6 months ago by Macspider • 1.5k
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1
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329
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1
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Quantification of repeats expression
ngs repeats rna-seq written 7 months ago by valerie • 40 • updated 7 months ago by Constantine • 150
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368
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Coverage Estimates for Masked Genome
assembly repeats masked written 10 months ago by Magpie101 • 0 • updated 10 months ago by Devon Ryan ♦ 70k
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9 follow
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How To Mask Repeats In Ngs Data.
repeats next-gen written 5.3 years ago by Daniel • 40 • updated 12 months ago by doctor.dee005 • 0
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386
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Alignment of repeat sequences with Bowtie2
bowtie2 repeats alignment written 14 months ago by Bo Sim • 0
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How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
genome assembly repeats repeatmasker ucsc written 15 months ago by M K • 300 • updated 15 months ago by Emily_Ensembl ♦ 13k
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900
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Better strategies for repeat masking?
annotation repeats repeatmasker written 19 months ago by Philipp Bayer ♦ 4.6k
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Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 22 months ago by Ginsea Chen • 110 • updated 20 months ago by abascalfederico • 970
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How to obtain and compare genomic coordinates from RepeatMasker output?
genome browser repeats repeatmasker gbrowse written 22 months ago by guilhermebdias • 30
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Inferring most probable integer copy number (repeat count) of contigs of a draft genome
copy numbers repeats contigs draft genome written 2.2 years ago by misaghb • 30 • updated 2.0 years ago by Biostar ♦♦ 20
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Identification of retrotransposons in large genomes
genome repeats retrotransposons identification written 2.1 years ago by Leszek ♦ 3.8k
2
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1
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994
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Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 2.2 years ago by Leszek ♦ 3.8k • updated 2.2 years ago by Pierre Lindenbaum ♦ 98k
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8 follow
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Edgeredef Failed When Running Repeatmodeler
repeats error written 6.6 years ago by Daniel Standage ♦ 3.7k • updated 2.4 years ago by Robert Hubley • 10
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2.4k
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Getting A List Of Satellite Repeats As Bed File From Ucsc [Repeatmasker]
repeats mysql repeatmasker written 5.1 years ago by Sukhdeep Singh ♦ 9.0k • updated 3.2 years ago by Biostar ♦♦ 20
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563
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Seedmasker documentation or usage example
seedmasker masking repeats msa written 3.2 years ago by Alex • 1.4k
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How To Obtain The Ancestral Repeats For Drosophila
transposable elements repeats repeatmasker written 4.1 years ago by EvoGen • 10 • updated 3.4 years ago by Casey Bergman ♦ 17k
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Number Of Tandem Duplications Within 10Kb In Vertebrate Genomes?
genome repeats written 4.4 years ago by 14134125465346445 • 3.3k • updated 3.5 years ago by Biostar ♦♦ 20
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Extract Alu Repeats
repeats written 4.8 years ago by GPR • 280 • updated 3.6 years ago by Kanhu charan Moharana • 10
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4
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6 follow
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Smaller Assembled Genome Size Than Expected
assembly next-gen velvet sequencing repeats illumina written 5.6 years ago by Rahul Sharma • 520 • updated 3.7 years ago by Adrian Pelin • 2.0k
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How To Find The Oriantation Of The Repeats Downloaded From Ucsc
repeats strand written 3.7 years ago by roll • 160 • updated 3.7 years ago by Pierre Lindenbaum ♦ 98k
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Different Repeat Motif
repeats motif written 6.0 years ago by Nur • 0 • updated 3.8 years ago by Biostar ♦♦ 20
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