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<prev • 77 results • page 1 of 3 • next >
22
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5
answers
8.1k
views
10 follow
5
answers
Where Can I Find A Good Database Of The Repeat Regions Of The Human Genome ?
genome repeats database human written 7.2 years ago by Stephwen • 130 • updated 13 days ago by Charles Warden ♦ 5.6k
0
votes
0
answers
699
views
0
answers
Masking repeats in your alignment
genome repeats sequencing written 18 months ago by biogirl • 150 • updated 4 weeks ago by Biostar ♦♦ 20
7
votes
1
answer
262
views
1
answer
Illegal Division by zero
perl transposable elements repeats written 7 weeks ago by sicat.paolo20 • 20 • updated 7 weeks ago by Michael Dondrup ♦ 45k
8
votes
2
answers
3.6k
views
2
answers
Instaling Reas Repeat Finding
repeats next-gen sequencing written 8.6 years ago by Darked89 ♦ 4.2k • updated 9 weeks ago by RamRS ♦ 19k
0
votes
1
answer
739
views
1
answer
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 15 months ago by qwzhang0601 • 60 • updated 11 weeks ago by Charles Warden ♦ 5.6k
6
votes
7
answers
3.1k
views
15 follow
7
answers
Edgeredef Failed When Running Repeatmodeler
repeats error written 7.7 years ago by Daniel Standage ♦ 3.8k • updated 3 months ago by bioinfo17 • 20
7
votes
1
answer
332
views
1
answer
How to annotate repeats?
sine annotation repeats line normalization written 6 months ago by Zee_S • 20 • updated 6 months ago by Beuss • 100
0
votes
0
answers
469
views
0
answers
read counts for RNA-seq analysis of repeat elements
repeats rna-seq written 7 months ago by qwzhang0601 • 60
1
vote
1
answer
238
views
1
answer
Excluding intervals with repeats
bed repeats masking written 7 months ago by rbronste • 200
1
vote
1
answer
473
views
1
answer
Primer design to do qPCR on repetitive elements
repeats repetitive elements qpcr written 10 months ago by Gema Sanz • 50 • updated 10 months ago by trausch • 1.1k
1
vote
1
answer
688
views
1
answer
Coverage Estimates for Masked Genome
assembly repeats masked written 2.0 years ago by Magpie101 • 0 • updated 12 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.5k
views
1
answer
Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human written 5.6 years ago by 14134125465346445 • 3.4k • updated 13 months ago by Biostar ♦♦ 20
1
vote
0
answers
527
views
0
answers
Masking repeats in ATAC-seq data
repeats atac-seq deseq written 14 months ago by rbronste • 200
0
votes
0
answers
449
views
0
answers
Compare repeat elelemts among species
repeats repeatmasker written 15 months ago by qwzhang0601 • 60 • updated 15 months ago by genomax ♦ 58k
1
vote
1
answer
710
views
1
answer
how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 15 months ago by kk.mahsa • 70
0
votes
1
answer
548
views
1
answer
get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 17 months ago by dabid • 0 • updated 17 months ago by Jean-Karim Heriche ♦ 16k
1
vote
1
answer
766
views
1
answer
getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 21 months ago by ron.eitan • 0 • updated 18 months ago by k.balaji93 • 10
0
votes
0
answers
868
views
0
answers
Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 19 months ago by veronicaschroeder78 • 100
0
votes
0
answers
664
views
0
answers
Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 20 months ago by Mike • 30
2
votes
1
answer
1.6k
views
1
answer
Detecting Variants near repeats
vcf repeats bam freebayes written 4.5 years ago by Adrian Pelin • 2.2k • updated 20 months ago by Macspider • 2.6k
6
votes
1
answer
711
views
1
answer
Quantification of repeats expression
ngs repeats rna-seq written 21 months ago by valerie • 50 • updated 21 months ago by Constantine • 210
10
votes
5
answers
5.4k
views
9 follow
5
answers
How To Mask Repeats In Ngs Data.
repeats next-gen written 6.4 years ago by Daniel • 40 • updated 2.2 years ago by Dattatray Mongad • 200
0
votes
0
answers
757
views
0
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Alignment of repeat sequences with Bowtie2
bowtie2 repeats alignment written 2.4 years ago by Bo Sim • 0
0
votes
1
answer
1.0k
views
1
answer
How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
genome assembly repeats repeatmasker ucsc written 2.4 years ago by M K • 410 • updated 2.4 years ago by Emily_Ensembl ♦ 16k
3
votes
0
answers
1.7k
views
0
answers
Better strategies for repeat masking?
annotation repeats repeatmasker written 2.7 years ago by Philipp Bayer ♦ 5.7k
0
votes
1
answer
1.0k
views
1
answer
Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 3.0 years ago by Ginsea Chen • 120 • updated 2.8 years ago by abascalfederico • 1.0k
5
votes
2
answers
1.1k
views
2
answers
How to obtain and compare genomic coordinates from RepeatMasker output?
genome browser repeats repeatmasker gbrowse written 3.0 years ago by gbdias • 60
0
votes
0
answers
974
views
0
answers
Inferring most probable integer copy number (repeat count) of contigs of a draft genome
copy numbers repeats contigs draft genome written 3.3 years ago by misaghb • 20 • updated 3.2 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.2k
views
1
answer
Identification of retrotransposons in large genomes
genome repeats retrotransposons identification written 3.3 years ago by Leszek ♦ 3.9k
2
votes
1
answer
1.3k
views
1
answer
Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 3.3 years ago by Leszek ♦ 3.9k • updated 3.3 years ago by Pierre Lindenbaum ♦ 114k
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