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<prev • 76 results • page 1 of 3 • next >
5
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13 follow
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Edgeredef Failed When Running Repeatmodeler
repeats error written 7.2 years ago by Daniel Standage ♦ 3.7k • updated 3 days ago by michael.b.broe • 0
5
votes
1
answer
97
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1
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How to annotate repeats?
sine annotation repeats line normalization written 7 days ago by Zee_S • 0 • updated 7 days ago by Beuss • 80
0
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0
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145
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0
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read counts for RNA-seq analysis of repeat elements
repeats rna-seq written 24 days ago by qwzhang0601 • 50
1
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1
answer
138
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1
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Excluding intervals with repeats
bed repeats masking written 5 weeks ago by rbronste • 160
1
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1
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277
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1
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Primer design to do qPCR on repetitive elements
repeats repetitive elements qpcr written 3 months ago by Gema Sanz • 50 • updated 3 months ago by trausch • 910
1
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1
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557
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1
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Coverage Estimates for Masked Genome
assembly repeats masked written 17 months ago by Magpie101 • 0 • updated 6 months ago by Biostar ♦♦ 20
2
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1
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1.4k
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1
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Needed Read Length To Solve Dna Fragments Containing Alu Elements In Vertebrate Genomes?
repeats human written 5.1 years ago by 14134125465346445 • 3.4k • updated 6 months ago by Biostar ♦♦ 20
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0
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332
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0
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 7 months ago by rbronste • 160
0
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316
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Compare repeat elelemts among species
repeats repeatmasker written 8 months ago by qwzhang0601 • 50 • updated 8 months ago by genomax ♦ 46k
0
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0
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451
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Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeats repeatmasker written 8 months ago by qwzhang0601 • 50
0
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0
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452
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0
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how to combine two output of RepeatMasker?
repeats next-gen repeatmasker written 8 months ago by kk.mahsa • 60
0
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1
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417
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1
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get repeats for bacteria and viruses to generate simulated reads of repeats
database viruses simulation bacteria repeats written 10 months ago by dabid • 0 • updated 10 months ago by Jean-Karim Heriche ♦ 15k
0
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0
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384
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Masking repeats in your alignment
genome repeats sequencing written 11 months ago by biogirl • 140
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1
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562
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1
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getDiffExpression.pl in HOMER doesn't seem be working... What am I doing wrong?
homer repeats rna 5-aza rna-seq written 14 months ago by ron.eitan • 0 • updated 11 months ago by k.balaji93 • 10
0
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526
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Where are examples of Interspersed repeats?
ministatellite str repeats sequence written 12 months ago by veronicaschroeder78 • 100
0
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438
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Assigning RepeatMasker classes and families to Repbase repeats
repeats repeatmasker repbase written 13 months ago by Mike • 30
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1
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1.3k
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1
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Detecting Variants near repeats
vcf repeats bam freebayes written 3.9 years ago by Adrian Pelin • 2.1k • updated 13 months ago by Macspider • 2.3k
6
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1
answer
476
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1
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Quantification of repeats expression
ngs repeats rna-seq written 15 months ago by valerie • 40 • updated 15 months ago by Constantine • 200
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9 follow
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How To Mask Repeats In Ngs Data.
repeats next-gen written 5.8 years ago by Daniel • 40 • updated 20 months ago by doctor.dee005 • 10
0
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0
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572
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0
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Alignment of repeat sequences with Bowtie2
bowtie2 repeats alignment written 21 months ago by Bo Sim • 0
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1
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736
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1
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How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
genome assembly repeats repeatmasker ucsc written 23 months ago by M K • 350 • updated 23 months ago by Emily_Ensembl ♦ 14k
3
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1.3k
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Better strategies for repeat masking?
annotation repeats repeatmasker written 2.2 years ago by Philipp Bayer ♦ 5.4k
0
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1
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902
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1
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Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 2.4 years ago by Ginsea Chen • 110 • updated 2.3 years ago by abascalfederico • 1.0k
5
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2
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875
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How to obtain and compare genomic coordinates from RepeatMasker output?
genome browser repeats repeatmasker gbrowse written 2.5 years ago by gbdias • 30
0
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0
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857
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Inferring most probable integer copy number (repeat count) of contigs of a draft genome
copy numbers repeats contigs draft genome written 2.8 years ago by misaghb • 20 • updated 2.6 years ago by Biostar ♦♦ 20
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1
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1.1k
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1
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Identification of retrotransposons in large genomes
genome repeats retrotransposons identification written 2.7 years ago by Leszek ♦ 3.9k
2
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1
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1.2k
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1
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Which repeats are present in soft-masked sequence?
genome annotation repeats softmasked written 2.7 years ago by Leszek ♦ 3.9k • updated 2.7 years ago by Pierre Lindenbaum ♦ 106k
3
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1
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1
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Getting A List Of Satellite Repeats As Bed File From Ucsc [Repeatmasker]
repeats mysql repeatmasker written 5.7 years ago by Sukhdeep Singh ♦ 9.3k • updated 3.8 years ago by Biostar ♦♦ 20
0
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683
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Seedmasker documentation or usage example
seedmasker masking repeats msa written 3.8 years ago by Alex • 1.4k
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2
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1.6k
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2
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How To Obtain The Ancestral Repeats For Drosophila
transposable elements repeats repeatmasker written 4.7 years ago by EvoGen • 10 • updated 4.0 years ago by Casey Bergman ♦ 17k
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