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2
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320
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5 follow
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Handling replicates in Chip-seq
replicates chip-seq written 6 months ago by chaudharyc61 • 20 • updated 20 days ago by Biostar ♦♦ 20
7
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3
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158
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6 follow
3
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Different number of peaks between biological replicates?
replicates chip-seq sequencing written 12 weeks ago by rohitsatyam102 • 60 • updated 11 weeks ago by colin.kern • 770
3
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1
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268
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1
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Which one to use for ChipSeq replicate comparison: Spearman or Pearson
replicates chip-seq correlation genome written 12 weeks ago by rohitsatyam102 • 60 • updated 12 weeks ago by colin.kern • 770
4
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1
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260
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1
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Advice on Handling Batch Effect in ChIP-seq Experiment
replicates sequencing chip-seq batch effect batch written 4 months ago by dmj6ab • 10
2
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1
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4.6k
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6 follow
1
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 6.0 years ago by hoangtv • 30 • updated 5 months ago by Biostar ♦♦ 20
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299
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Single Cell RNA Sequencing - replicates pooling and barcoding
scrna-seq barcode replicates pooling written 5 months ago by Bolesaem • 10
0
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0
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125
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Check for variation between two replicates in transcriptome data
replicates statistical test rna-seq written 6 months ago by sagardesai91 • 50
4
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1
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279
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1
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macs14 replicates treatment and final wiggle peak files
replicates chip-seq macs14 wig-file written 8 months ago by kashiff007 • 130 • updated 8 months ago by geek_y ♦ 10k
0
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0
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581
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Bootstrapping a phylogenetic tree using FastTree
replicates bootstrapping phylogenetics fasttree written 10 months ago by ginohino • 0
0
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201
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0
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Merge MNase-seq bam files from replicates.
replicates mnase-seq merge next-gen bam-files written 10 months ago by kashiff007 • 130
15
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1
answer
755
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5 follow
1
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Analysis Without Replicates
replicates without rna-seq written 13 months ago by stevenmarkgalway • 10
1
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0
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791
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0
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SRA Database: Samples with Multiple Sequencing Runs Per Sample
replicates sra technical replicates written 14 months ago by vlrieg • 10
1
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2
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DESeq2 for differential expression analysis of RNA-seq datawith few samples per condition?
replicates samples deseq2 rna-seq written 4.3 years ago by amyfm • 10 • updated 16 months ago by Biostar ♦♦ 20
9
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2
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10 follow
2
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Replicates for RNA-seq from 1 cell line undergoing different treatments
replicates cell lines rna-seq written 2.0 years ago by azayob • 0 • updated 19 months ago by BIOTECH.DEEPTI911 • 0
13
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2
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772
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10 follow
2
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How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
replicates R deseq2 rna-seq prepde.py written 20 months ago by nancy • 80 • updated 19 months ago by i.sudbery ♦ 6.6k
1
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1
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855
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How to deal with (combine) technical replicates (FPKM vs Read count data) for RNA-Seq experiments?
replicates gene expression read count rna-seq written 22 months ago by Ameya Kulkarni • 0 • updated 22 months ago by Devon Ryan ♦ 93k
11
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2
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8.6k
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9 follow
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Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 6.6 years ago by shangzhong0619 • 20 • updated 2.0 years ago by Biostar ♦♦ 20
44
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5
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11k
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12 follow
5
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Rna-Seq Biological Replicates...
replicates gene next-gen rna sequencing written 9.7 years ago by Gregory Miles • 100 • updated 2.0 years ago by pshubhamoy • 20
3
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0
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1.8k
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0
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Calling peaks with macs2 if not all replicates have a corresponding input-file
replicates macs2 chip-seq written 2.8 years ago by jklopp • 0 • updated 2.6 years ago by Biostar ♦♦ 20
8
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1
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5.0k
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5 follow
1
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Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal With The Merged Peaks (Peak Consensus) ?
replicates chip-seq motif written 6.1 years ago by Nick • 270 • updated 3.1 years ago by Biostar ♦♦ 20
1
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1
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4.0k
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1
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The Purpose Of The Repeat Experiments
replicates snp genotyping written 8.4 years ago by Zhshqzyc • 490 • updated 3.4 years ago by Biostar ♦♦ 20
1
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0
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1.1k
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High in group variability RNA seq
replicates variability rna seq written 3.6 years ago by Biogeek • 380
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8
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3.3k
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8
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TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 4.0 years ago by IrK • 40
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1
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1.9k
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1
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qRT-PCR analysis : average triplicates for statistical testing
replicates qrt-pcr statistics written 4.1 years ago by Nicolas Rosewick ♦ 8.6k • updated 4.1 years ago by Devon Ryan ♦ 93k
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0
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1.6k
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Cell Line gene expression Analysis with multiple replicates
replicates cell line gene expression analysis written 4.3 years ago by hpw9 • 0 • updated 4.2 years ago by Biostar ♦♦ 20
0
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1
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975
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1
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Blog: Benchmarking DGE Tools as a Function of Replicates
deseq dge tools blog rna-seq replicates edger written 4.6 years ago by support • 630 • updated 4.6 years ago by Antonio R. Franco • 4.3k
8
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3
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3.5k
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Differential expression without technical replicates
replicates cufflinks deseq rna-seq expression written 4.6 years ago by jakalssj3 • 80 • updated 4.6 years ago by Gary • 470
1
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1
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3.3k
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1
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DE analysis with [DESeq2] without replicates
replicates time series deseq2 rna-seq written 4.9 years ago by john • 30 • updated 4.9 years ago by kangyueapril • 80
0
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2
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2.0k
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How to merge replicates of mapped reads out of Tophat for pathview and gage analysis.
replicates tophat pathview gage written 5.6 years ago by Parham • 1.4k • updated 5.0 years ago by geek_y ♦ 10k
32
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4
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8.9k
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23 follow
4
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 5.4 years ago by dariober ♦ 10k • updated 5.3 years ago by Michele Busby • 2.1k
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