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DESeq2 for differential expression analysis of RNA-seq datawith few samples per condition?
replicates samples deseq2 rna-seq written 3.0 years ago by amyfm • 10 • updated 5 weeks ago by Biostar ♦♦ 20
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3
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628
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7 follow
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Replicates for RNA-seq from 1 cell line undergoing different treatments
replicates cell lines rna-seq written 9 months ago by azayob • 0 • updated 4 months ago by BIOTECH.DEEPTI911 • 0
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322
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8 follow
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How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
replicates R deseq2 rna-seq prepde.py written 4 months ago by nancy • 60 • updated 4 months ago by i.sudbery • 2.6k
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How to deal with (combine) technical replicates (FPKM vs Read count data) for RNA-Seq experiments?
replicates gene expression read count rna-seq written 7 months ago by Ameya Kulkarni • 0 • updated 7 months ago by Devon Ryan ♦ 85k
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9 follow
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Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 5.4 years ago by shangzhong0619 • 20 • updated 9 months ago by Biostar ♦♦ 20
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Rna-Seq Biological Replicates...
replicates gene next-gen rna sequencing written 8.4 years ago by Gregory Miles • 100 • updated 9 months ago by pshubhamoy • 20
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Mixed biological and technical replicates in RNAseq differential expression experiment.
replicates experimental design deseq2 rna-seq written 13 months ago by jcrickets • 0
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Calling peaks with macs2 if not all replicates have a corresponding input-file
replicates macs2 chip-seq written 18 months ago by jklopp • 0 • updated 16 months ago by Biostar ♦♦ 20
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5 follow
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Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal With The Merged Peaks (Peak Consensus) ?
replicates chip-seq motif written 4.9 years ago by Nick • 250 • updated 22 months ago by Biostar ♦♦ 20
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The Purpose Of The Repeat Experiments
replicates snp genotyping written 7.1 years ago by Zhshqzyc • 450 • updated 2.2 years ago by Biostar ♦♦ 20
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708
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High in group variability RNA seq
replicates variability rna seq written 2.3 years ago by Biogeek • 280
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TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 2.7 years ago by IrK • 20
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1
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qRT-PCR analysis : average triplicates for statistical testing
replicates qrt-pcr statistics written 2.8 years ago by Nicolas Rosewick ♦ 6.8k • updated 2.8 years ago by Devon Ryan ♦ 85k
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Cell Line gene expression Analysis with multiple replicates
replicates cell line gene expression analysis written 3.0 years ago by hpw9 • 0 • updated 2.9 years ago by Biostar ♦♦ 20
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Blog: Benchmarking DGE Tools as a Function of Replicates
deseq dge tools blog rna-seq replicates edger written 3.4 years ago by support • 610 • updated 3.4 years ago by Antonio R. Franco • 3.9k
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Differential expression without technical replicates
replicates cufflinks deseq rna-seq expression written 3.4 years ago by jakalssj3 • 80 • updated 3.4 years ago by Gary • 450
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DE analysis with [DESeq2] without replicates
replicates time series deseq2 rna-seq written 3.6 years ago by john • 30 • updated 3.6 years ago by kangyueapril • 80
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How to merge replicates of mapped reads out of Tophat for pathview and gage analysis.
replicates tophat pathview gage written 4.3 years ago by Parham • 1.3k • updated 3.7 years ago by geek_y ♦ 8.7k
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4
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7.0k
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19 follow
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 4.1 years ago by dariober ♦ 9.5k • updated 4.1 years ago by Michele Busby • 1.9k
20
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5
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16k
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10 follow
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Rnaseq Differential Expression
replicates rna-seq written 6.3 years ago by Ashutosh Pandey ♦ 11k • updated 4.2 years ago by Onat • 0
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5 follow
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Should the reads of biological replicates be combined for ChIP-seq peak calling?
replicates chip-seq written 4.3 years ago by Ian ♦ 5.2k • updated 4.3 years ago by Chris Fields • 1.9k
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Replicates in Tophat
replicates tophat written 4.3 years ago by Parham • 1.3k • updated 4.3 years ago by Devon Ryan ♦ 85k
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How To Combine Solid Ngs Reads From Technical Replicates
replicates solid written 8.0 years ago by Ian ♦ 5.2k • updated 4.6 years ago by Biostar ♦♦ 20
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Low Number Of Replicates Deseq
replicates R variation deseq written 4.7 years ago by federico.gaiti • 70 • updated 4.7 years ago by Michele Busby • 1.9k
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1
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6 follow
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 4.7 years ago by hoangtv • 20 • updated 4.7 years ago by Charles Warden ♦ 5.5k
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4
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5.9k
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13 follow
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Rna-Seq: Treat Samples As Biological Replicates?
replicates rna-seq written 4.8 years ago by jockbanan • 370 • updated 4.8 years ago by Michele Busby • 1.9k
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How To Use Biological Replicates For Allele Specific Analysis Using Heterozygous Population ?
replicates written 4.8 years ago by Ashutosh Pandey ♦ 11k • updated 4.8 years ago by Charles Warden ♦ 5.5k
17
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3
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6.9k
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13 follow
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Time Course Rna-Seq Analysis
replicates rna-seq written 5.6 years ago by kanwarjag • 900 • updated 4.8 years ago by Charles Warden ♦ 5.5k
4
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3
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2.9k
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3
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Replicates In Chip-Seq
replicates model chip-seq written 5.1 years ago by Nick • 250 • updated 5.1 years ago by Ying W • 3.8k
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Rna-Seq : Biological And Technical Replicates In Expression Analysis (Deseq)
replicates biology deseq rna-seq written 5.2 years ago by Nicolas Rosewick ♦ 6.8k • updated 5.2 years ago by Charles Warden ♦ 5.5k
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