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5
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3
answers
495
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7 follow
3
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Replicates for RNA-seq from 1 cell line undergoing different treatments
replicates cell lines rna-seq written 6 months ago by azayob • 0 • updated 5 weeks ago by BIOTECH.DEEPTI911 • 0
10
votes
2
answers
226
views
8 follow
2
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How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
replicates R deseq2 rna-seq prepde.py written 7 weeks ago by nancy • 60 • updated 6 weeks ago by i.sudbery • 2.4k
0
votes
1
answer
164
views
1
answer
How to deal with (combine) technical replicates (FPKM vs Read count data) for RNA-Seq experiments?
replicates gene expression read count rna-seq written 4 months ago by Ameya Kulkarni • 0 • updated 4 months ago by Devon Ryan ♦ 81k
10
votes
2
answers
7.2k
views
9 follow
2
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Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 5.1 years ago by shangzhong0619 • 20 • updated 6 months ago by Biostar ♦♦ 20
44
votes
5
answers
10k
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12 follow
5
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Rna-Seq Biological Replicates...
replicates gene next-gen rna sequencing written 8.2 years ago by Gregory Miles • 100 • updated 6 months ago by pshubhamoy • 20
0
votes
0
answers
897
views
0
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Mixed biological and technical replicates in RNAseq differential expression experiment.
replicates experimental design deseq2 rna-seq written 10 months ago by jcrickets • 0
3
votes
0
answers
993
views
0
answers
Calling peaks with macs2 if not all replicates have a corresponding input-file
replicates macs2 chip-seq written 15 months ago by jklopp • 0 • updated 13 months ago by Biostar ♦♦ 20
8
votes
1
answer
4.2k
views
5 follow
1
answer
Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal With The Merged Peaks (Peak Consensus) ?
replicates chip-seq motif written 4.6 years ago by Nick • 250 • updated 19 months ago by Biostar ♦♦ 20
1
vote
1
answer
2.7k
views
1
answer
The Purpose Of The Repeat Experiments
replicates snp genotyping written 6.9 years ago by Zhshqzyc • 450 • updated 23 months ago by Biostar ♦♦ 20
1
vote
0
answers
612
views
0
answers
High in group variability RNA seq
replicates variability rna seq written 2.1 years ago by Biogeek • 280
2
votes
8
answers
2.2k
views
8
answers
TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 2.5 years ago by IrK • 20
0
votes
1
answer
1.2k
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1
answer
qRT-PCR analysis : average triplicates for statistical testing
replicates qrt-pcr statistics written 2.6 years ago by Nicolas Rosewick ♦ 6.5k • updated 2.6 years ago by Devon Ryan ♦ 81k
0
votes
0
answers
1.1k
views
0
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Cell Line gene expression Analysis with multiple replicates
replicates cell line gene expression analysis written 2.8 years ago by hpw9 • 0 • updated 2.6 years ago by Biostar ♦♦ 20
1
vote
4
answers
1.6k
views
4
answers
DESeq2 for differential expression analysis of RNA-seq datawith few samples per condition?
replicates samples deseq2 rna-seq written 2.7 years ago by amyfm • 10 • updated 2.7 years ago by marina.kimyr • 10
0
votes
1
answer
740
views
1
answer
Blog: Benchmarking DGE Tools as a Function of Replicates
deseq dge tools blog rna-seq replicates edger written 3.1 years ago by support • 610 • updated 3.1 years ago by Antonio R. Franco • 3.7k
8
votes
3
answers
2.6k
views
3
answers
Differential expression without technical replicates
replicates cufflinks deseq rna-seq expression written 3.1 years ago by jakalssj3 • 80 • updated 3.1 years ago by Gary • 440
1
vote
1
answer
2.5k
views
1
answer
DE analysis with [DESeq2] without replicates
replicates time series deseq2 rna-seq written 3.4 years ago by john • 30 • updated 3.4 years ago by kangyueapril • 80
0
votes
2
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1.7k
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2
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How to merge replicates of mapped reads out of Tophat for pathview and gage analysis.
replicates tophat pathview gage written 4.0 years ago by Parham • 1.3k • updated 3.5 years ago by geek_y ♦ 8.6k
29
votes
4
answers
6.6k
views
19 follow
4
answers
ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 3.8 years ago by dariober ♦ 9.3k • updated 3.8 years ago by Michele Busby • 1.8k
20
votes
5
answers
16k
views
10 follow
5
answers
Rnaseq Differential Expression
replicates rna-seq written 6.1 years ago by Ashutosh Pandey ♦ 11k • updated 4.0 years ago by Onat • 0
12
votes
2
answers
5.3k
views
5 follow
2
answers
Should the reads of biological replicates be combined for ChIP-seq peak calling?
replicates chip-seq written 4.0 years ago by Ian ♦ 5.2k • updated 4.0 years ago by Chris Fields • 1.9k
4
votes
1
answer
1.7k
views
1
answer
Replicates in Tophat
replicates tophat written 4.1 years ago by Parham • 1.3k • updated 4.1 years ago by Devon Ryan ♦ 81k
8
votes
1
answer
2.6k
views
1
answer
How To Combine Solid Ngs Reads From Technical Replicates
replicates solid written 7.8 years ago by Ian ♦ 5.2k • updated 4.4 years ago by Biostar ♦♦ 20
1
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2
answers
2.1k
views
2
answers
Low Number Of Replicates Deseq
replicates R variation deseq written 4.4 years ago by federico.gaiti • 70 • updated 4.4 years ago by Michele Busby • 1.8k
2
votes
1
answer
3.9k
views
6 follow
1
answer
Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 4.4 years ago by hoangtv • 20 • updated 4.4 years ago by Charles Warden ♦ 5.1k
20
votes
4
answers
5.7k
views
13 follow
4
answers
Rna-Seq: Treat Samples As Biological Replicates?
replicates rna-seq written 4.5 years ago by jockbanan • 370 • updated 4.5 years ago by Michele Busby • 1.8k
0
votes
1
answer
2.1k
views
1
answer
How To Use Biological Replicates For Allele Specific Analysis Using Heterozygous Population ?
replicates written 4.6 years ago by Ashutosh Pandey ♦ 11k • updated 4.6 years ago by Charles Warden ♦ 5.1k
17
votes
3
answers
6.7k
views
13 follow
3
answers
Time Course Rna-Seq Analysis
replicates rna-seq written 5.4 years ago by kanwarjag • 890 • updated 4.6 years ago by Charles Warden ♦ 5.1k
4
votes
3
answers
2.8k
views
3
answers
Replicates In Chip-Seq
replicates model chip-seq written 4.9 years ago by Nick • 250 • updated 4.9 years ago by Ying W • 3.8k
2
votes
1
answer
3.8k
views
1
answer
Rna-Seq : Biological And Technical Replicates In Expression Analysis (Deseq)
replicates biology deseq rna-seq written 4.9 years ago by Nicolas Rosewick ♦ 6.5k • updated 4.9 years ago by Charles Warden ♦ 5.1k
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