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<prev • 43 results • page 1 of 2 • next >
13
votes
1
answer
211
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5 follow
1
answer
Analysis Without Replicates
replicates without rna-seq written 1 day ago by stevenmarkgalway • 10
1
vote
0
answers
109
views
0
answers
SRA Database: Samples with Multiple Sequencing Runs Per Sample
replicates sra technical replicates written 21 days ago by vlrieg • 10
1
vote
2
answers
1.9k
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2
answers
DESeq2 for differential expression analysis of RNA-seq datawith few samples per condition?
replicates samples deseq2 rna-seq written 3.1 years ago by amyfm • 10 • updated 12 weeks ago by Biostar ♦♦ 20
6
votes
2
answers
711
views
7 follow
2
answers
Replicates for RNA-seq from 1 cell line undergoing different treatments
replicates cell lines rna-seq written 11 months ago by azayob • 0 • updated 6 months ago by BIOTECH.DEEPTI911 • 0
12
votes
2
answers
376
views
8 follow
2
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How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
replicates R deseq2 rna-seq prepde.py written 6 months ago by nancy • 60 • updated 6 months ago by i.sudbery • 2.8k
0
votes
1
answer
338
views
1
answer
How to deal with (combine) technical replicates (FPKM vs Read count data) for RNA-Seq experiments?
replicates gene expression read count rna-seq written 8 months ago by Ameya Kulkarni • 0 • updated 8 months ago by Devon Ryan ♦ 86k
10
votes
2
answers
7.6k
views
9 follow
2
answers
Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 5.5 years ago by shangzhong0619 • 20 • updated 10 months ago by Biostar ♦♦ 20
44
votes
5
answers
10k
views
12 follow
5
answers
Rna-Seq Biological Replicates...
replicates gene next-gen rna sequencing written 8.6 years ago by Gregory Miles • 100 • updated 11 months ago by pshubhamoy • 20
0
votes
0
answers
1.2k
views
0
answers
Mixed biological and technical replicates in RNAseq differential expression experiment.
replicates experimental design deseq2 rna-seq written 15 months ago by jcrickets • 0
3
votes
0
answers
1.2k
views
0
answers
Calling peaks with macs2 if not all replicates have a corresponding input-file
replicates macs2 chip-seq written 19 months ago by jklopp • 0 • updated 17 months ago by Biostar ♦♦ 20
8
votes
1
answer
4.4k
views
5 follow
1
answer
Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal With The Merged Peaks (Peak Consensus) ?
replicates chip-seq motif written 5.0 years ago by Nick • 250 • updated 2.0 years ago by Biostar ♦♦ 20
1
vote
1
answer
3.2k
views
1
answer
The Purpose Of The Repeat Experiments
replicates snp genotyping written 7.3 years ago by Zhshqzyc • 470 • updated 2.3 years ago by Biostar ♦♦ 20
1
vote
0
answers
762
views
0
answers
High in group variability RNA seq
replicates variability rna seq written 2.5 years ago by Biogeek • 320
2
votes
8
answers
2.4k
views
8
answers
TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 2.9 years ago by IrK • 20
0
votes
1
answer
1.4k
views
1
answer
qRT-PCR analysis : average triplicates for statistical testing
replicates qrt-pcr statistics written 3.0 years ago by Nicolas Rosewick ♦ 7.0k • updated 3.0 years ago by Devon Ryan ♦ 86k
0
votes
0
answers
1.2k
views
0
answers
Cell Line gene expression Analysis with multiple replicates
replicates cell line gene expression analysis written 3.2 years ago by hpw9 • 0 • updated 3.0 years ago by Biostar ♦♦ 20
0
votes
1
answer
807
views
1
answer
Blog: Benchmarking DGE Tools as a Function of Replicates
deseq dge tools blog rna-seq replicates edger written 3.5 years ago by support • 610 • updated 3.5 years ago by Antonio R. Franco • 3.9k
8
votes
3
answers
2.8k
views
3
answers
Differential expression without technical replicates
replicates cufflinks deseq rna-seq expression written 3.5 years ago by jakalssj3 • 80 • updated 3.5 years ago by Gary • 450
1
vote
1
answer
2.7k
views
1
answer
DE analysis with [DESeq2] without replicates
replicates time series deseq2 rna-seq written 3.8 years ago by john • 30 • updated 3.7 years ago by kangyueapril • 80
0
votes
2
answers
1.8k
views
2
answers
How to merge replicates of mapped reads out of Tophat for pathview and gage analysis.
replicates tophat pathview gage written 4.4 years ago by Parham • 1.4k • updated 3.9 years ago by geek_y ♦ 8.8k
29
votes
4
answers
7.2k
views
19 follow
4
answers
ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 4.2 years ago by dariober ♦ 9.7k • updated 4.2 years ago by Michele Busby • 1.9k
20
votes
5
answers
16k
views
10 follow
5
answers
Rnaseq Differential Expression
replicates rna-seq written 6.5 years ago by Ashutosh Pandey ♦ 11k • updated 4.4 years ago by Onat • 0
12
votes
2
answers
5.6k
views
5 follow
2
answers
Should the reads of biological replicates be combined for ChIP-seq peak calling?
replicates chip-seq written 4.4 years ago by Ian ♦ 5.3k • updated 4.4 years ago by Chris Fields • 2.0k
4
votes
1
answer
1.8k
views
1
answer
Replicates in Tophat
replicates tophat written 4.4 years ago by Parham • 1.4k • updated 4.4 years ago by Devon Ryan ♦ 86k
8
votes
1
answer
2.7k
views
1
answer
How To Combine Solid Ngs Reads From Technical Replicates
replicates solid written 8.2 years ago by Ian ♦ 5.3k • updated 4.8 years ago by Biostar ♦♦ 20
1
vote
2
answers
2.2k
views
2
answers
Low Number Of Replicates Deseq
replicates R variation deseq written 4.8 years ago by federico.gaiti • 70 • updated 4.8 years ago by Michele Busby • 1.9k
2
votes
1
answer
4.1k
views
6 follow
1
answer
Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 4.8 years ago by hoangtv • 20 • updated 4.8 years ago by Charles Warden ♦ 5.7k
20
votes
4
answers
6.0k
views
13 follow
4
answers
Rna-Seq: Treat Samples As Biological Replicates?
replicates rna-seq written 4.9 years ago by jockbanan • 370 • updated 4.9 years ago by Michele Busby • 1.9k
0
votes
1
answer
2.2k
views
1
answer
How To Use Biological Replicates For Allele Specific Analysis Using Heterozygous Population ?
replicates written 5.0 years ago by Ashutosh Pandey ♦ 11k • updated 5.0 years ago by Charles Warden ♦ 5.7k
17
votes
3
answers
6.9k
views
13 follow
3
answers
Time Course Rna-Seq Analysis
replicates rna-seq written 5.8 years ago by kanwarjag • 910 • updated 5.0 years ago by Charles Warden ♦ 5.7k
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