rhdf5 Posts

C: Which normalization method/pipeline is best to generate normalized counts to mak by amjass • 20
thank you - and can TPM counts be applied individually to samples and then merged? presumably yes...
C: Which normalization method/pipeline is best to generate normalized counts to mak by amjass • 20
its a bit of both, some experiments will contain similar cell types and others certainly contain ...
A: how to build matrices for DeSeq 2 from salmon quan.sf files by ATpoint ♦ 46k
Warning: tl:dr will follow but I guess some background information might be appreciated. => S...
C: cannot download refseq genomes by sapuizait • 0
less jobs in parallel did the trick, only a 1% failed - but started using the datasets as well, t...
C: PanCancerAtlas RNA-SeqV2 (RSEM) file contains negative values by ATpoint ♦ 46k
Please use `ADD REPLY`, the answer box is for answers only. That keeps it logically organized.
C: Chip-seq IgG as control or Input DNA or usage of both by luckysardar171 • 0
Any suggestions will be helpful Thank you
A: What batch correction was applied to pan-Cancer mRNA expression data? by chengdu_1982 • 0
whether the exp matrix log transformed?
A: PanCancerAtlas RNA-SeqV2 (RSEM) file contains negative values by chengdu_1982 • 0
whether the exp matrix log transformed?
C: How to get REF and ALT alleles from a genotype data? by biotechnology415 • 0
AA and TT are SNPs in my sample.
C: How to get REF and ALT alleles from a genotype data? by biotechnology415 • 0
Thanks, I understood
C: Alignment Error in BWA: The sequence "lcl|" was not found by GenoMax ♦ 96k
Just to be sure you downloaded `fasta` format of the genome sequence correct? Do you just see onl...
C: Search all SRA data for sequence? Raw reads only by GenoMax ♦ 96k
While not quite the same thing you can do a sequence search against EBI's metagenomic dataset `MG...