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Read subgroup of HDF5 file with (0,0) group name?

rhdf5 python hdf5 dataframe pandas written 4 months ago by star • 260

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Importing Kallisto counts with tximport

rhdf5 transcriptomics kallisto written 6 months ago by Rogerio Ribeiro • 30

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Recent Replies

C: Box plot for rna seq data by rhasanvandj • 20
Sorry I dont understand how the input data here is look like. I am not sure if my data format is...
C: Extract sequences from a list of ID by shenwei356 ♦ 5.5k
Hmm... I've tested with your sample data, everything is OK. You may check the input data (check...
C: Extract sequences from a list of ID by shenwei356 ♦ 5.5k
Option `-w` should be added to `grep` for exact matching.
C: Box plot for rna seq data by Hamid Ghaedi • 550
The third column has "normalized_counts" which is coming from the RNA-seq experiment. Since they ...
C: KEGG pathway IDs by Hamid Ghaedi • 550
Would you please provide more details about your research question? Obviously KEGG identifiers ar...
C: Box plot for rna seq data by rhasanvandj • 20
Thank you Hamid. these are really informative. I dobnot see any RNA seq expression values in this...
A: Extract sequences from a list of ID by hxj5 • 0
Could also use [seqtk][1] or AWK from an old thread [Tool: Retrieve a subset of FASTA from large ...
C: igv question what is the blackline under the bam coverage? by 972050141 • 0
Thank you very much
C: Extract sequences from a list of ID by doinelpierrot • 0
Thank for your answer I have tried this but there is 6835 sequences in outputfile.fasta whereas I...
C: Box plot for rna seq data by Hamid Ghaedi • 550
Ok then you need to use `melt` function from the `reshape` package to make a data frame with colu...
C: How To Merge Isoforms For A Gene by Yu • 110
Just a note here, this script doesn't work for the scenario that the same gene name locates on di...
C: Box plot for rna seq data by rhasanvandj • 20
Hi Hamid Thanks this is for one column vs one row data. I do not know how to do it for 64 genes ...

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