risk score Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

227

views

answers

GWAS results and linkage disequilibrium issue

gwas linkage disequilibrium ld risk score written 5 months ago by seta • 1.4k

vote

answer

211

views

answer

Risk score stratification with k-means

cluster cut-off risk score written 9 months ago by julia.gilhodes • 0 • updated 9 months ago by Kevin Blighe ♦ 71k

votes

answer

1.3k

views

answer

Gene expression based risk score

sequencing gene expression rna-seq risk score written 3.7 years ago by Govardhan Anande • 140 • updated 23 months ago by zhaoliang0302 • 20

votes

answer

1.8k

views

answer

How to calculate Polygenic Risk Score from Summary Results with Z-Score only

z-score prs grs polygenic risk score risk score written 2.2 years ago by AnnaStieber • 10 • updated 2.1 years ago by Sam • 3.3k

votes

answers

815

views

answers

Function returning % trait explained for a SNP given effect size, MAF, prevalence, etc. for a complex trait

R genetic variance explained risk score written 2.6 years ago by Vincent Laufer • 1.1k • updated 2.6 years ago by zx8754 ♦ 10.0k

vote

answers

6.2k

views

answers

Polygenic Risk Score PLINK

snp scoring polygenic risk score plink risk score written 4.3 years ago by mzezza • 10 • updated 3.0 years ago by rse • 90

Recent Votes

Recent Locations • All »

United Kingdom, 2 minutes ago
Finland, 5 minutes ago

Recent Awards • All »

Teacher to Mensur Dlakic • 9.1k
Teacher to rpolicastro ♦ 4.0k
Scholar to rpolicastro ♦ 4.0k
Appreciated to Pierre Lindenbaum ♦ 134k
Gold Standard to Kevin Blighe ♦ 71k
Popular Question to Emily_Ensembl ♦ 21k

Recent Replies

C: Getting mitochondrial genes for scRNAseq by ATpoint ♦ 46k
That would still qualify the cell (=the droplet) as poor quality, so where is the difference in u...
C: Plink1.07 generate ERRORs when reading covaries by heqianchange • 0
Thank you very much. I revised the format of the covariable file and the error has gone.
C: Discussion on effects of Gain-of-Function mutations by German.M.Demidov • 1.9k
Hi GenoMax, this is the answer to my question actually =) thank you very much!
C: Understanding TCGA's ASCAT copy number data by loughrae • 50
Go raibh míle maith agat Kevin! Firstly, thanks for the explanation re: max/min copy number, th...
C: Discussion on effects of Gain-of-Function mutations by GenoMax ♦ 96k
This answer from a recent thread will be useful : https://www.biostars.org/p/480799/#480916 @Men...
A: Getting mitochondrial genes for scRNAseq by charlesgwellem • 0
For droplet based approaches, I would not use the percentage of mitochondrial genes in isolation ...
C: Less and less genes predicted with each iteration of SNAP/MAKER by robert.murphy • 30
Apologies for necroing this thread. What are your thought on using the `BRAKER2` pipeline to tra...
A: FASTQC: overrepresented sequences by GenoMax ♦ 96k
PolyG = No signal for 2-color chemistry Illumina sequencers. That sequence is not real. If you ch...
C: Creating Correlation Plot using distance method from a data.frame by jansha.1997 • 0
Thanks a lot for the code. If I might ask , does this corr function use the Pearson method in the...
C: FASTQC: overrepresented sequences by ATpoint ♦ 46k
0.12298334311639213% => just ignore it, it is barely an issue.
A: Getting ENTREZ GENE IDs for data frame, any help? by bastien.ducreux • 0
Hi, I would better use mapIds mapIds(org.Hs.eg.db, rownames(mydata8), 'ENTREZID', 'SYMBOL')
C: Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis by camillab. • 40
How would write the loop of the logistic regression model if instead of "Schizophrenia" (so the t...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 2070 users visited in the last hour