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Gene expression based risk score

sequencing gene expression rna-seq risk score written 22 months ago by Govardhan Anande • 130 • updated 27 days ago by zhaoliang0302 • 0

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How to calculate Polygenic Risk Score from Summary Results with Z-Score only

z-score prs grs polygenic risk score risk score written 4 months ago by AnnaStieber • 0 • updated 3 months ago by Sam • 2.3k

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Function returning % trait explained for a SNP given effect size, MAF, prevalence, etc. for a complex trait

R genetic variance explained risk score written 9 months ago by Vincent Laufer • 1.0k • updated 9 months ago by zx8754 ♦ 7.1k

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Polygenic Risk Score PLINK

snp scoring polygenic risk score plink risk score written 2.4 years ago by mzezza • 10 • updated 13 months ago by rse • 70

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Recent Replies

A: Samtools mpileup - Sudden decrease of coverage at homopolymer regions by Kevin Blighe ♦ 41k
It is likely not an issue with *SAMtools* and is instead reflective of the alignment process - it...
C: compare chloroplast genome by natasha.sernova • 3.4k
See this very recent article(2019): Comparative Analysis of the Complete Chloroplast Genome Sequ...
C: How to find correlation between two datasets/vectors? by Kevin Blighe ♦ 41k
So, you are aiming to do some sort of multi-omics analysis? In that case, the correlation may be ...
C: How to find correlation between two datasets/vectors? by Jon • 90
thanks for enlightening me! but the problem is they are from different platform, one is single ...
C: Is there a way to compare single-cell RNA seq and Ribotag-seq? by Jon • 90
Hi Devon, I got Dynamically regulated genes across the maturation trajectory(for single cell data...
C: How to find correlation between two datasets/vectors? by Kevin Blighe ♦ 41k
Here is the limitation of correlation: x <- c(1,2,3,4,5,6,7,8,9,10) y <- c(10,11,1...
C: Segmentation fault (core dumped) in SOAP by Kevin Blighe ♦ 41k
It is likely an issue related to memory / RAM. How much do you have available? Also, take a look ...
C: How to find correlation between two datasets/vectors? by Jon • 90
thanks, how can I show whether it has "similar expression pattern"
C: Segmentation fault (core dumped) in SOAP by choi.yisoo.hi • 0
Yes it was. I edited!
A: How to find correlation between two datasets/vectors? by Kevin Blighe ♦ 41k
To do the correlation, you can just follow this reproducible example using random data: tes...
C: fastx quality stats outputting .txt? files by iaagosch • 0
I added `;` to the end of every line and, apparently, fixed it. The scripts I had as examples did...
C: working with Sanger fasta + qual + clip files by sullis02 • 0
Thank you very much!!

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