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How to RMA normalize microarray expression data only without the CEL files?
rma oligo affy microarray written 7 weeks ago by Microuser • 0
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143
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Normalizing multiple conditons all together
rma time series microarray written 3 months ago by Rahil • 180
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1
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244
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1
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Microarray data normalization
normalization rma microarray written 6 months ago by seta • 1.4k • updated 6 months ago by Kevin Blighe ♦ 70k
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224
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Problem in RMA normalization (Microarray Affymetrix)
rma oligo microarray affybatch written 7 months ago by Microuser • 0 • updated 7 months ago by Biostar ♦♦ 20
2
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Does the expression data from GEO Series Matrix File(s) can directly be used with limma workflow
normalization rma micro-array limma R written 9 months ago by spriyansh29 • 30 • updated 9 months ago by Kevin Blighe ♦ 70k
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Normalization of gene expression data
rma gene expression written 9 months ago by sana777munquad • 0
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1
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Question on performing RMA normalization
rma microarray written 16 months ago by Natasha • 40
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480
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Normalizing raw data from Affymetrix expression microarrays
rma gene-expression cel written 16 months ago by Natasha • 40 • updated 16 months ago by ATpoint ♦ 45k
4
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1
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522
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1
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frma normalization function not working on ExpressionFeatureSet object
normalization rma frma microarray preprocess written 17 months ago by asalimih • 30 • updated 17 months ago by Kevin Blighe ♦ 70k
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2.4k
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how to normalize microarray expression set
gds getgeo rma written 3.3 years ago by Michel Edwar • 70 • updated 23 months ago by Kevin Blighe ♦ 70k
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1.4k
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1
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RMA normalize Nimblegen array data
trancript abundance rma nimblegen excel microarray written 5.1 years ago by jmwhitha • 0 • updated 23 months ago by Kevin Blighe ♦ 70k
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1
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644
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Values in the data.frame are negative by RMA normalization, how deseq2 package work for that data?
rma deseq2 rna-seq written 2.1 years ago by dqz377977905 • 0 • updated 2.1 years ago by GenoMax ♦ 96k
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There is any package for sst-RMA normalization in R?
rma affymetrix expression console microarray written 2.3 years ago by mgdrnl • 10
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Error in get(cdfname, object 'mm430mmentrezgcdf' not found
rma affy cdf affymetrix written 2.3 years ago by Walter Jessen • 90
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7 follow
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RMA with Affymetrix Expression Console vs Oligo package
rma oligo microarray expression console written 4.0 years ago by User43533445 • 10 • updated 2.3 years ago by Kevin Blighe ♦ 70k
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933
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lesser fold change value using RMA background correction
normalization rma microarray deg limma written 2.5 years ago by Paul • 80
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1
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5 follow
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Microarray data analysis - pipeline (problem with custom CDF)
arrayexpress rma cdf microarray affymetrix written 3.5 years ago by lessismore • 990 • updated 3.5 years ago by mannoulag1 • 60
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Normalizing with RMA and filtering with mas5calls (affymetrix arrays)
rma mas5calls normalizing filtering job written 4.3 years ago by aguasalina • 0 • updated 4.3 years ago by poisonAlien • 3.0k
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1.6k
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1
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How to extract information about normalisation method (e.g. RMA, MAS5) from GEO Soft File?
geo R rma mas5 soft written 4.3 years ago by StephanieK • 100 • updated 4.3 years ago by Santosh Anand ♦ 5.3k
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919
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Importing data onto partek
partek rma signal affymetrix normalization written 4.3 years ago by sshibin • 0
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What are RMA units?
array rma affymetrix written 4.4 years ago by lotus28 • 70
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1.6k
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Affymetrix Power Tools Error #2
software error rma microarray error apt written 4.5 years ago by Steve • 10 • updated 4.5 years ago by GenoMax ♦ 96k
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1.4k
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1
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Processed mArray data, RMA-Value for significantly expressed genes
marray rma threshold written 4.7 years ago by Rockbar • 0
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918
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Microarray data processing from multiple runs
rma microarray written 4.7 years ago by fanli.gcb • 710 • updated 4.7 years ago by Ar • 1.0k
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reading microarray data through readAffy
R rma cell files readaffy written 4.9 years ago by 12021560-040 • 60
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