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RNASeq datasets with different total counts
normalization rna seq written 7 days ago by felipead66 • 80 • updated 7 days ago by agata88 • 810
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fastqc report and quality check
rna seq written 14 days ago by aranyak111 • 0
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5 follow
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Counting data with ht seq
alignment rna seq written 11 weeks ago by aranyak111 • 0 • updated 11 weeks ago by jerry • 100
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171
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Cells per sample
rna seq single cell written 7 months ago by GiuliaAC • 10
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194
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RNA Seq data distribution
libraries deseq2 rna seq distribution written 9 months ago by felipead66 • 80
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Heatmap2 missing some genes
rna seq heatmap written 11 months ago by ovariohisterectomia • 20 • updated 11 months ago by Jean-Karim Heriche ♦ 24k
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Reference genome for RNA-Seq reads decontamination
rna seq fastq_screen decontamination written 11 months ago by gnmcsbnfrmtcsclb • 30
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Decontaminate RNASeq data from other cell types?
gene expression rna seq decontamination written 14 months ago by pennakiza • 60
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How to Choose PCs from a HeatMap
rna seq single cell written 15 months ago by gtasource • 60 • updated 15 months ago by Kevin Blighe ♦ 71k
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rna seq single ended -Information on Rseqc report
standedness rna seq rseqc written 2.1 years ago by ASid • 10 • updated 2.1 years ago by lshepard • 440
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Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 2.2 years ago by V • 240
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Atypical volcano plot RNA-seq
unequal sample size deseq2 rna seq volcano-plot written 2.3 years ago by Teresa • 20 • updated 2.3 years ago by WouterDeCoster ♦ 45k
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1
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711
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Mapsplice 2 error
ngs data analysis rna seq fusion gene written 2.6 years ago by amitunited0532 • 40 • updated 2.6 years ago by EagleEye ♦ 6.8k
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Sort and convert the SAM files to BAM
ngs data analysis samtools rna seq bam sam written 2.6 years ago by amitunited0532 • 40 • updated 2.6 years ago by finswimmer ♦ 14k
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STAR options for RNA Seq
star rna seq written 2.8 years ago by skhan • 10 • updated 2.8 years ago by swbarnes2 ♦ 9.6k
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miRNA analysis for de novo assembled RNA seq data
mirna prediction rna seq written 3.4 years ago by adil.simply • 0
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to run bowtie on multiple fastq file
rna seq multiple fastq file bowtie written 5.0 years ago by Kritika • 260 • updated 3.8 years ago by Biostar ♦♦ 20
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Comparison of MeDIP data with transcriptomics expression data
medip rna seq written 4.0 years ago by saripalligautam86 • 0
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crossing multiple annotations and validation with RNA-seq
annotation rna seq written 4.1 years ago by guillaume.rbt • 830
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RNA Seq length distribution plot
rna seq distribution plot written 4.1 years ago by HK • 40
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Circos plot for ecoli genome
genomic visualisation circos rna seq written 4.2 years ago by raya.girish • 20
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Number of contigs does not match number in count matrix --- de novo assembly
assembly count matrix rna seq trinity written 4.7 years ago by nikelle.petrillo • 100 • updated 4.5 years ago by Biostar ♦♦ 20
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trinity assembly error, run failed
trinity rna rna seq written 4.8 years ago by nikelle.petrillo • 100 • updated 4.6 years ago by tirza.doniger • 10
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How to determine number of contigs used in Trinity assembly?
trinity de contigs rna seq assembly written 4.7 years ago by nikelle.petrillo • 100 • updated 4.7 years ago by Benn ♦ 8.1k
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using IGV to visualize RNA seq alignment to transcriptome
alignment rna rna seq igv written 4.7 years ago by nikelle.petrillo • 100
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High in group variability RNA seq
replicates variability rna seq written 4.7 years ago by Biogeek • 400
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do i need to run Trinity assembly ALL over?
assembly trininty rna seq written 4.7 years ago by nikelle.petrillo • 100 • updated 4.7 years ago by Chris Fields • 2.2k
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Determining read count
trimmomatic trinity read count rna seq written 4.8 years ago by nikelle.petrillo • 100
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Inconsistencies between RNA Seq and PCR
rna seq interference pcr written 4.9 years ago by Bnf83 • 150 • updated 4.9 years ago by WouterDeCoster ♦ 45k
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Are indel realignment and base recalibration necessary for RNAseq data?
gatk gene expression rna seq tool written 4.9 years ago by Bnf83 • 150 • updated 4.9 years ago by John ♦ 12k
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