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4
votes
2
answers
105
views
2
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low assignment reads % in RNA-seq
R rna-seq written 3 days ago by parinv • 30 • updated 2 days ago by sysboolean • 50
0
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0
answers
34
views
0
answers
Bacterial RNA-SEQ Aligner Rockhopper
rna-seq written 2 days ago by Sammy • 10
1
vote
0
answers
46
views
0
answers
Number of upregulated and downregulated genes from counts matrix
degs up and downregulated genes rna-seq written 2 days ago by taniamahmood38 • 20
0
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0
answers
37
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0
answers
Suggested Trimmomatic inputs for LEADING and TAILING
quality control rna-seq sequencing written 2 days ago by dadrasarmin • 0
0
votes
0
answers
41
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0
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News: 5th Berlin Summer School in NGS Data Analysis 2021 (June 7-11)
news dna-seq ngs workshop rna-seq written 2 days ago by David Langenberger ♦ 9.6k
0
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0
answers
34
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0
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FASTQ level UMI correction for TCR analysis
umi tcr fastq mixcr rna-seq written 2 days ago by gordo2b • 0
1
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0
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36
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0
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miRNA seq, problems with alignment
alignment rna-seq written 2 days ago by adrian.ramirezdearellano • 0
7
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4
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4.1k
views
15 follow
4
answers
How to generate KEGG pathway classification chart
kegg rna-seq written 23 months ago by dongchenchen • 30 • updated 2 days ago by Leite • 1.1k
2
votes
1
answer
72
views
1
answer
NO FDR <0.05 in the whole dataset
fdr R qvalue rna-seq written 2 days ago by camillab. • 40 • updated 2 days ago by rpolicastro ♦ 3.9k
0
votes
0
answers
41
views
0
answers
Selecting Samples based on Clustering
gene rna-seq sequencing written 2 days ago by rajpal22288 • 50
0
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0
answers
44
views
0
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Genomic Variant calling from RNA-Seq Data
genomic variant rna-seq snp written 2 days ago by hkarakurt • 110
0
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0
answers
42
views
0
answers
Estrogen hormonal signalling genes
rna-seq written 2 days ago by glady • 270
2
votes
1
answer
76
views
6 follow
1
answer
Two Sample t-test with bootstrapping for gene expression matrix in R
R rna-seq written 3 days ago by Expert • 10 • updated 2 days ago by e.rempel • 1000
0
votes
1
answer
50
views
1
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Does transcriptome assembly data contains introns?
assembly stringtie transcriptome rna-seq hisat2 written 2 days ago by noorussubah95 • 0 • updated 2 days ago by lieven.sterck ♦ 10.0k
0
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0
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71
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0
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Are there any databases for gene co-expression or gene clustering by spatial/cell-type patterns?
gene rna-seq written 2 days ago by yepeng.huang • 0
1
vote
0
answers
71
views
0
answers
Multifactor analysis in DESeq2
rna-seq written 2 days ago by a.basitkhan1990 • 10
0
votes
1
answer
106
views
1
answer
Samtools depth to get the read depth
rna-seq sequencing written 6 days ago by bandanaschapagain • 30
2
votes
1
answer
61
views
1
answer
How to get real cell names from Seurat Object?
rna-seq written 3 days ago by leranwangcs • 20 • updated 3 days ago by from the mountains • 130
0
votes
0
answers
42
views
0
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How can I analyze a VCF dataset without an annotated reference genome
genome R galaxy rna-seq gatk written 3 days ago by julianneradford • 0
2
votes
2
answers
56
views
2
answers
convert DNA FASTA file to RNA FASTA file
sequence chip-seq rna-seq written 3 days ago by xiaoleiusc • 70 • updated 3 days ago by JC ♦ 12k
4
votes
3
answers
114
views
7 follow
3
answers
Blastn, need help to increase speed
blastn blast+ rna-seq written 3 days ago by chiachoong_leong93 • 0 • updated 3 days ago by Mensur Dlakic • 9.0k
0
votes
0
answers
35
views
0
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compare a list of RNA with RNA sequence in RFAM using python
python rfam rna-seq written 3 days ago by phangou10 • 0
2
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1
answer
57
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1
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How to convert gff3 format, PASApipeline
assembly rna-seq written 3 days ago by Ruixuan • 0 • updated 3 days ago by Juke34 • 5.1k
0
votes
0
answers
41
views
0
answers
Can I calculate the effect size from log2FoldChange in gene expression?
effect size deseq2 rna-seq effsize written 3 days ago by ev97 • 0
4
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1
answer
3.9k
views
1
answer
problems installing HTSeq
htseq dexseq rna-seq written 3.8 years ago by Lila M • 880 • updated 4 days ago by Biostar ♦♦ 20
1
vote
1
answer
55
views
1
answer
GSEA with GGProfiler2 (?"annotated" vs "known" for background control)
ggprofiler2 rna-seq gsea written 4 days ago by drodavis0 • 0 • updated 4 days ago by ATpoint ♦ 45k
0
votes
0
answers
64
views
0
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Finding assembled transcript sequences from StringTie output
stringtie assembled transcripts sequences rna-seq written 4 days ago by Jen • 0
1
vote
1
answer
313
views
1
answer
How to deal with single nucleus data in Seurat
single nucleus rna sequencing rna-seq seurat written 4 months ago by bellymountain • 10 • updated 5 days ago by Pancreas Pratik • 110
0
votes
0
answers
111
views
0
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How do you create a multiple reference genome in Hisat2?
assembly next-gen rna-seq alignment hisat2 written 7 weeks ago by Aaron • 0 • updated 5 days ago by Biostar ♦♦ 20
0
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0
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233
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0
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How to modify a BAM file to avoid double-counting of variants from overlapping PE reads?
bsseq rna-seq written 6 days ago by lech.kaczmarczyk • 0
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