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272
votes
11
answers
33k
views
196 follow
11
answers
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
forum papers tutorial rna-seq sequencing written 5.0 years ago by CandiceChuDVM • 2.2k
219
votes
1
answer
65k
views
222 follow
1
answer
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 5.5 years ago by TriS • 4.3k • updated 13 months ago by jnmcluo • 0
122
votes
1
answer
27k
views
115 follow
1
answer
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 3.2 years ago by Kevin Blighe ♦ 69k
98
votes
3
answers
23k
views
75 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 4.9 years ago by Jordan Anaya • 1.1k • updated 4.1 years ago by ewre • 220
64
votes
3
answers
22k
views
62 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 8.4 years ago by Istvan Albert ♦♦ 86k • updated 5.0 years ago by art.matysik • 0
98
votes
6
answers
71k
views
67 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 7.9 years ago by Obi Griffith ♦ 19k
58
votes
0
answers
18k
views
69 follow
0
answers
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 6.9 years ago by Istvan Albert ♦♦ 86k • updated 8 months ago by _r_am ♦ 32k
91
votes
7
answers
16k
views
63 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 6.7 years ago by Obi Griffith ♦ 19k
66
votes
8
answers
28k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.7 years ago by brentp ♦ 23k • updated 10 days ago by Biostar ♦♦ 20
129
votes
8
answers
34k
views
49 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.8 years ago by lh3 ♦ 32k • updated 4.8 years ago by Michael Dondrup ♦ 48k
65
votes
3
answers
20k
views
59 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 7.3 years ago by Irsan • 7.2k • updated 3 months ago by _r_am ♦ 32k
63
votes
1
answer
5.6k
views
46 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 5.5 years ago by geek_y ♦ 11k • updated 5.2 years ago by Malachi Griffith ♦ 18k
49
votes
0
answers
37k
views
35 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.8 years ago by Sukhi Singh ♦ 10k • updated 5.0 years ago by Shicheng Guo • 8.5k
58
votes
1
answer
18k
views
37 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 5.4 years ago by IV • 1.3k
55
votes
1
answer
66k
views
44 follow
1
answer
Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene expression blog rna-seq written 3.3 years ago by Renesh • 1.9k
137
votes
5
answers
30k
views
60 follow
5
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 7.2 years ago by sckinta • 600 • updated 20 months ago by lffu_0032 • 60
146
votes
9
answers
54k
views
77 follow
9
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 7.9 years ago by Nicolas Rosewick ♦ 9.3k • updated 2.8 years ago by kristoffer.vittingseerup • 3.5k
120
votes
4
answers
20k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 4.3 years ago by Lars • 760 • updated 4.3 years ago by David Langenberger ♦ 9.5k
32
votes
2
answers
26k
views
2
answers
RNA-seq: Explain STAR quantMode geneCounts values
star rna-seq differential expression written 4.2 years ago by williantafsilva • 230 • updated 2.8 years ago by Tao • 420
28
votes
0
answers
1.8k
views
27 follow
0
answers
Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
batch correction tutorial ma-plot rna-seq edger written 4 months ago by ATpoint ♦ 44k
30
votes
0
answers
1.4k
views
28 follow
0
answers
Tutorial: Gene Set Enrichment Analysis
enrichment tutorial microarray rna-seq gsea written 3 months ago by Hamid Ghaedi • 1.2k
97
votes
8
answers
29k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 8.0 years ago by Lisa • 320 • updated 5.9 years ago by n124080 • 10
46
votes
3
answers
96k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.8 years ago by biorepine • 1.5k • updated 14 months ago by Renesh • 1.9k
100
votes
17
answers
35k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.6 years ago by KS • 370 • updated 2.1 years ago by Shixiang • 70
48
votes
5
answers
36k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 8.0 years ago by biorepine • 1.5k • updated 5.6 years ago by Malachi Griffith ♦ 18k
17
votes
0
answers
7.3k
views
19 follow
0
answers
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
tutorial rna-seq written 7.9 years ago by Istvan Albert ♦♦ 86k
46
votes
2
answers
196k
views
34 follow
2
answers
Understanding up and down regulated genes from LOG2 foldchange or foldchange
gene tutorial expression protein rna-seq written 6.7 years ago by Whoknows • 860 • updated 3.6 years ago by FatihSarigol • 190
47
votes
2
answers
25k
views
35 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 6.5 years ago by thisismytest3023 • 180 • updated 5.7 years ago by juara • 10
35
votes
6
answers
7.3k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 4.6 years ago by Mike • 1.7k • updated 2.8 years ago by Biostar ♦♦ 20
19
votes
1
answer
20k
views
10 follow
1
answer
Deseq, Edger And Cuffdiff - Different Result
differential expression analysis rna-seq written 8.6 years ago by Nicolas Rosewick ♦ 9.3k • updated 8.5 years ago by Arun ♦ 2.4k
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