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222
votes
11
answers
19k
views
148 follow
11
answers
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
forum papers tutorial rna-seq sequencing written 2.4 years ago by CandiceChuDVM • 1.7k
150
votes
37
answers
36k
views
149 follow
37
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 2.9 years ago by TriS • 3.4k • updated 23 days ago by skjobs0123 • 0
60
votes
3
answers
17k
views
56 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 5.8 years ago by Istvan Albert ♦♦ 77k • updated 2.4 years ago by art.matysik • 0
76
votes
3
answers
14k
views
48 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 2.3 years ago by Jordan Anaya • 890 • updated 18 months ago by hanguangchun • 120
90
votes
7
answers
12k
views
60 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 4.1 years ago by Obi Griffith ♦ 16k
91
votes
6
answers
61k
views
58 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 5.3 years ago by Obi Griffith ♦ 16k
65
votes
8
answers
24k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 8.1 years ago by brentp ♦ 22k • updated 2.8 years ago by Malachi Griffith ♦ 16k
115
votes
8
answers
25k
views
41 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 6.2 years ago by lh3 ♦ 30k • updated 2.2 years ago by Michael Dondrup ♦ 44k
59
votes
1
answer
4.1k
views
44 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 2.9 years ago by geek_y ♦ 8.6k • updated 2.6 years ago by Malachi Griffith ♦ 16k
42
votes
2
answers
12k
views
49 follow
2
answers
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 4.4 years ago by Istvan Albert ♦♦ 77k • updated 5 months ago by tangj • 0
53
votes
1
answer
15k
views
33 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 2.8 years ago by IV • 1.1k
48
votes
3
answers
14k
views
43 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 4.7 years ago by Irsan • 6.6k • updated 4 months ago by lhdcsu • 10
42
votes
0
answers
28k
views
25 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 6.2 years ago by Sukhdeep Singh ♦ 9.3k • updated 2.4 years ago by Shicheng Guo • 4.9k
123
votes
9
answers
45k
views
66 follow
9
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 5.3 years ago by Nicolas Rosewick • 6.3k • updated 10 weeks ago by kristoffer.vittingseerup • 470
46
votes
0
answers
2.3k
views
33 follow
0
answers
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 6 months ago by Kevin Blighe ♦ 21k
96
votes
8
answers
26k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 5.4 years ago by Lisa • 300 • updated 3.3 years ago by n124080 • 10
107
votes
4
answers
22k
views
44 follow
4
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 4.7 years ago by sckinta • 420 • updated 4.0 years ago by Ann • 2.2k
104
votes
4
answers
8.7k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 21 months ago by Lars • 550 • updated 21 months ago by David Langenberger ♦ 8.1k
15
votes
0
answers
5.7k
views
17 follow
0
answers
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
tutorial rna-seq written 5.3 years ago by Istvan Albert ♦♦ 77k
37
votes
3
answers
66k
views
24 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.2 years ago by biorepine • 1.4k • updated 9 months ago by Renesh • 1.2k
26
votes
6
answers
3.5k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 24 months ago by Mike • 980 • updated 11 weeks ago by Biostar ♦♦ 20
48
votes
2
answers
4.0k
views
30 follow
2
answers
Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 10 months ago by sonpham • 350
91
votes
19
answers
28k
views
47 follow
19
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 6.1 years ago by KS • 340 • updated 20 months ago by aditisk • 0
18
votes
1
answer
16k
views
8 follow
1
answer
Deseq, Edger And Cuffdiff - Different Result
differential expression analysis rna-seq written 6.0 years ago by Nicolas Rosewick • 6.3k • updated 5.9 years ago by Arun ♦ 2.2k
45
votes
5
answers
29k
views
26 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 5.4 years ago by biorepine • 1.4k • updated 3.0 years ago by Malachi Griffith ♦ 16k
31
votes
2
answers
2.1k
views
23 follow
2
answers
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
assembly forum rna-seq 2016 sequencing written 17 months ago by dago • 2.5k
29
votes
3
answers
15k
views
18 follow
3
answers
Best Approach To Predict Novel And Alternative Splicing Events From Rna-Seq Data
splicing expression rna-seq written 5.2 years ago by Sahel • 250 • updated 4.2 years ago by Malachi Griffith ♦ 16k
24
votes
3
answers
11k
views
26 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 4.0 years ago by Christian • 2.6k • updated 2.0 years ago by Michael Dondrup ♦ 44k
40
votes
2
answers
16k
views
28 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 3.9 years ago by thisismytest3023 • 150 • updated 3.1 years ago by juara • 0
24
votes
2
answers
31k
views
15 follow
2
answers
Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 6.1 years ago by Sahel • 250 • updated 2.0 years ago by Biostar ♦♦ 20
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