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<prev • 6,466 results • page 1 of 216 • next >
166
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11
answers
10k
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101 follow
11
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Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Oct 2016)
forum papers tutorial rna-seq sequencing written 17 months ago by CandiceChuDVM • 1.1k • updated 6 days ago by Bilal • 0
118
votes
33
answers
21k
views
118 follow
33
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 22 months ago by TriS • 2.8k • updated 7 days ago by oriolebaltimore • 20
54
votes
3
answers
14k
views
46 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 4.8 years ago by Istvan Albert ♦♦ 71k • updated 16 months ago by art.matysik • 0
61
votes
3
answers
8.4k
views
32 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 15 months ago by Jordan Anaya • 720 • updated 6 months ago by hanguangchun • 110
65
votes
8
answers
20k
views
28 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 7.1 years ago by brentp ♦ 22k • updated 21 months ago by Malachi Griffith ♦ 15k
88
votes
7
answers
11k
views
56 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 3.1 years ago by Obi Griffith ♦ 15k
85
votes
6
answers
47k
views
47 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 4.3 years ago by Obi Griffith ♦ 15k
109
votes
8
answers
21k
views
37 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 5.2 years ago by lh3 ♦ 29k • updated 14 months ago by Michael Dondrup ♦ 42k
55
votes
1
answer
3.4k
views
37 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 22 months ago by Goutham Atla ♦ 7.2k • updated 19 months ago by Malachi Griffith ♦ 15k
49
votes
1
answer
11k
views
29 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 21 months ago by IV • 1.1k
32
votes
1
answer
9.6k
views
39 follow
1
answer
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 3.4 years ago by Istvan Albert ♦♦ 71k • updated 14 months ago by fizer • 20
39
votes
2
answers
11k
views
38 follow
2
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 3.7 years ago by Irsan • 6.3k • updated 2.2 years ago by Kamil • 1.5k
110
votes
8
answers
37k
views
57 follow
8
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 4.3 years ago by Nicolas Rosewick • 5.0k • updated 14 months ago by Lalit • 10
36
votes
0
answers
24k
views
17 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 5.2 years ago by Sukhdeep Singh ♦ 8.8k • updated 16 months ago by Shicheng Guo • 4.4k
94
votes
8
answers
24k
views
31 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 4.5 years ago by Lisa • 290 • updated 2.3 years ago by n124080 • 10
101
votes
4
answers
18k
views
40 follow
4
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 3.7 years ago by sckinta • 380 • updated 3.0 years ago by Ann • 2.1k
16
votes
1
answer
14k
views
8 follow
1
answer
Deseq, Edger And Cuffdiff - Different Result
differential expression analysis rna-seq written 5.0 years ago by Nicolas Rosewick • 5.0k • updated 4.9 years ago by Arun ♦ 2.2k
31
votes
2
answers
1.0k
views
23 follow
2
answers
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
assembly forum rna-seq 2016 sequencing written 5 months ago by dago • 2.2k
43
votes
5
answers
24k
views
23 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 4.4 years ago by biorepine • 1.2k • updated 2.0 years ago by Malachi Griffith ♦ 15k
13
votes
0
answers
4.7k
views
13 follow
0
answers
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
tutorial rna-seq written 4.3 years ago by Istvan Albert ♦♦ 71k
32
votes
2
answers
51k
views
19 follow
2
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 4.2 years ago by biorepine • 1.2k
24
votes
3
answers
8.6k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.0 years ago by Christian • 2.5k • updated 12 months ago by Michael Dondrup ♦ 42k
32
votes
2
answers
13k
views
23 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 3.0 years ago by thisismytest3023 • 130 • updated 2.1 years ago by nabbi.arash • 0
96
votes
4
answers
3.9k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 9 months ago by Lars • 430 • updated 9 months ago by David Langenberger ♦ 7.8k
24
votes
2
answers
27k
views
15 follow
2
answers
Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 5.1 years ago by Sahel • 240 • updated 12 months ago by Biostar ♦♦ 20
33
votes
5
answers
12k
views
20 follow
5
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 4.6 years ago by Abhi • 1.4k • updated 4.4 years ago by Houkto • 210
27
votes
3
answers
14k
views
15 follow
3
answers
Best Approach To Predict Novel And Alternative Splicing Events From Rna-Seq Data
splicing expression rna-seq written 4.2 years ago by Sahel • 240 • updated 3.2 years ago by Malachi Griffith ♦ 15k
25
votes
3
answers
11k
views
10 follow
3
answers
Tool: HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline
microarray heatmap R c++ rna-seq tool written 2.5 years ago by Bohdan Khomtchouk • 270 • updated 2.5 years ago by mikhail.shugay ♦ 3.2k
82
votes
19
answers
24k
views
38 follow
19
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 5.1 years ago by KS • 310 • updated 8 months ago by aditisk • 0
17
votes
3
answers
5.8k
views
13 follow
3
answers
Time Course Rna-Seq Analysis
replicates rna-seq written 4.3 years ago by kanwarjag • 750 • updated 3.5 years ago by Charles Warden ♦ 4.8k
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