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175
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11
answers
12k
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112 follow
11
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Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Oct 2016)
forum papers tutorial rna-seq sequencing written 19 months ago by CandiceChuDVM • 1.2k • updated 9 weeks ago by Bilal • 0
123
votes
33
answers
23k
views
125 follow
33
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 2.1 years ago by TriS • 3.0k • updated 9 weeks ago by oriolebaltimore • 20
56
votes
3
answers
15k
views
50 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 5.0 years ago by Istvan Albert ♦♦ 73k • updated 18 months ago by art.matysik • 0
63
votes
3
answers
9.6k
views
34 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 18 months ago by Jordan Anaya • 750 • updated 8 months ago by hanguangchun • 120
66
votes
8
answers
21k
views
28 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 7.3 years ago by brentp ♦ 22k • updated 23 months ago by Malachi Griffith ♦ 15k
89
votes
7
answers
11k
views
58 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 3.3 years ago by Obi Griffith ♦ 15k
86
votes
6
answers
50k
views
49 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 4.5 years ago by Obi Griffith ♦ 15k
110
votes
8
answers
22k
views
39 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 5.3 years ago by lh3 ♦ 30k • updated 16 months ago by Michael Dondrup ♦ 42k
56
votes
1
answer
3.5k
views
39 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 2.0 years ago by geek_y ♦ 7.8k • updated 21 months ago by Malachi Griffith ♦ 15k
49
votes
1
answer
12k
views
29 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 23 months ago by IV • 1.1k
33
votes
1
answer
10k
views
39 follow
1
answer
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 3.5 years ago by Istvan Albert ♦♦ 73k • updated 16 months ago by fizer • 20
40
votes
2
answers
12k
views
38 follow
2
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 3.8 years ago by Irsan • 6.3k • updated 2.4 years ago by Kamil • 1.5k
113
votes
8
answers
39k
views
60 follow
8
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 4.5 years ago by Nicolas Rosewick • 5.2k • updated 4 hours ago by Biostar ♦♦ 20
37
votes
0
answers
24k
views
19 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 5.4 years ago by Sukhdeep Singh ♦ 9.0k • updated 18 months ago by Shicheng Guo • 4.4k
94
votes
8
answers
24k
views
31 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 4.6 years ago by Lisa • 290 • updated 2.4 years ago by n124080 • 10
101
votes
4
answers
19k
views
40 follow
4
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 3.8 years ago by sckinta • 380 • updated 3.2 years ago by Ann • 2.1k
16
votes
1
answer
15k
views
8 follow
1
answer
Deseq, Edger And Cuffdiff - Different Result
differential expression analysis rna-seq written 5.2 years ago by Nicolas Rosewick • 5.2k • updated 5.0 years ago by Arun ♦ 2.2k
14
votes
0
answers
4.9k
views
15 follow
0
answers
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
tutorial rna-seq written 4.5 years ago by Istvan Albert ♦♦ 73k
37
votes
2
answers
13k
views
27 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 3.1 years ago by thisismytest3023 • 150 • updated 2.3 years ago by juara • 0
31
votes
2
answers
1.2k
views
23 follow
2
answers
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
assembly forum rna-seq 2016 sequencing written 7 months ago by dago • 2.3k
43
votes
5
answers
25k
views
23 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 4.6 years ago by biorepine • 1.2k • updated 2.2 years ago by Malachi Griffith ♦ 15k
32
votes
2
answers
53k
views
19 follow
2
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 4.4 years ago by biorepine • 1.2k
24
votes
3
answers
9.2k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.2 years ago by Christian • 2.5k • updated 14 months ago by Michael Dondrup ♦ 42k
97
votes
4
answers
4.4k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 11 months ago by Lars • 430 • updated 11 months ago by David Langenberger ♦ 7.9k
43
votes
2
answers
2.3k
views
26 follow
2
answers
Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 26 days ago by sonpham • 310 • updated 18 days ago by y.divyatej • 0
24
votes
2
answers
28k
views
15 follow
2
answers
Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 5.3 years ago by Sahel • 240 • updated 14 months ago by Biostar ♦♦ 20
85
votes
19
answers
25k
views
41 follow
19
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 5.2 years ago by KS • 320 • updated 10 months ago by aditisk • 0
33
votes
5
answers
12k
views
20 follow
5
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 4.8 years ago by Abhi • 1.4k • updated 4.6 years ago by Houkto • 210
27
votes
3
answers
14k
views
15 follow
3
answers
Best Approach To Predict Novel And Alternative Splicing Events From Rna-Seq Data
splicing expression rna-seq written 4.4 years ago by Sahel • 240 • updated 3.4 years ago by Malachi Griffith ♦ 15k
26
votes
5
answers
24k
views
15 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 2.7 years ago by NHEJ • 250 • updated 15 months ago by Daniel • 3.4k
<prev • 6,908 results • page 1 of 231 • next >
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