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267
votes
11
answers
31k
views
190 follow
11
answers
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
forum papers tutorial rna-seq sequencing written 4.5 years ago by CandiceChuDVM • 2.1k
214
votes
1
answer
62k
views
218 follow
1
answer
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 5.0 years ago by TriS • 4.2k • updated 7 months ago by jnmcluo • 0
90
votes
3
answers
22k
views
67 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 4.4 years ago by Jordan Anaya • 1.1k • updated 3.7 years ago by ewre • 220
112
votes
1
answer
23k
views
97 follow
1
answer
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 2.7 years ago by Kevin Blighe ♦ 63k
61
votes
3
answers
21k
views
58 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 7.9 years ago by Istvan Albert ♦♦ 84k • updated 4.5 years ago by art.matysik • 0
96
votes
6
answers
70k
views
63 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 7.4 years ago by Obi Griffith ♦ 18k
55
votes
0
answers
17k
views
65 follow
0
answers
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 6.5 years ago by Istvan Albert ♦♦ 84k • updated 12 weeks ago by RamRS ♦ 28k
91
votes
7
answers
14k
views
63 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 6.2 years ago by Obi Griffith ♦ 18k
66
votes
8
answers
28k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.2 years ago by brentp ♦ 23k • updated 4.9 years ago by Malachi Griffith ♦ 18k
128
votes
8
answers
33k
views
47 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.3 years ago by lh3 ♦ 32k • updated 4.3 years ago by Michael Dondrup ♦ 47k
65
votes
3
answers
19k
views
58 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 6.8 years ago by Irsan • 7.2k • updated 2.5 years ago by lhdcsu • 30
63
votes
1
answer
5.4k
views
46 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 5.0 years ago by geek_y ♦ 11k • updated 4.8 years ago by Malachi Griffith ♦ 18k
48
votes
0
answers
36k
views
35 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.3 years ago by Sukhdeep Singh ♦ 10k • updated 4.5 years ago by Shicheng Guo • 8.3k
57
votes
1
answer
18k
views
36 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 4.9 years ago by IV • 1.3k
52
votes
1
answer
58k
views
42 follow
1
answer
Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene expression blog rna-seq written 2.9 years ago by Renesh • 1.9k
135
votes
5
answers
29k
views
58 follow
5
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 6.8 years ago by sckinta • 580 • updated 14 months ago by lffu_0032 • 50
117
votes
4
answers
18k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 3.9 years ago by Lars • 740 • updated 3.9 years ago by David Langenberger ♦ 9.5k
136
votes
9
answers
53k
views
67 follow
9
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 7.4 years ago by Nicolas Rosewick ♦ 9.0k • updated 2.3 years ago by kristoffer.vittingseerup • 3.4k
28
votes
2
answers
23k
views
2
answers
RNA-seq: Explain STAR quantMode geneCounts values
star rna-seq differential expression written 3.8 years ago by williantafsilva • 210 • updated 2.3 years ago by Tao • 380
97
votes
8
answers
29k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 7.6 years ago by Lisa • 310 • updated 5.4 years ago by n124080 • 10
46
votes
3
answers
93k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.4 years ago by biorepine • 1.5k • updated 8 months ago by Renesh • 1.9k
99
votes
17
answers
34k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.2 years ago by KS • 370 • updated 19 months ago by Shixiang • 60
48
votes
5
answers
35k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 7.6 years ago by biorepine • 1.5k • updated 5.2 years ago by Malachi Griffith ♦ 18k
17
votes
0
answers
7.1k
views
19 follow
0
answers
Tutorial: Rna Seq Experimental Design For Measuring Differential Gene Expression
tutorial rna-seq written 7.4 years ago by Istvan Albert ♦♦ 84k
47
votes
2
answers
23k
views
35 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 6.1 years ago by thisismytest3023 • 180 • updated 5.2 years ago by juara • 10
35
votes
6
answers
6.7k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 4.1 years ago by Mike • 1.6k • updated 2.4 years ago by Biostar ♦♦ 20
19
votes
1
answer
20k
views
10 follow
1
answer
Deseq, Edger And Cuffdiff - Different Result
differential expression analysis rna-seq written 8.2 years ago by Nicolas Rosewick ♦ 9.0k • updated 8.0 years ago by Arun ♦ 2.3k
43
votes
2
answers
185k
views
32 follow
2
answers
Understanding up and down regulated genes from LOG2 foldchange or foldchange
gene tutorial expression protein rna-seq written 6.2 years ago by Whoknows • 820 • updated 3.1 years ago by FatihSarigol • 160
48
votes
2
answers
5.8k
views
30 follow
2
answers
Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 3.0 years ago by sonpham • 570
73
votes
5
answers
35k
views
38 follow
5
answers
Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 7.8 years ago by siddharth.sethi5 • 250 • updated 6.7 years ago by earonesty • 230
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