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224
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1
answer
66k
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224 follow
1
answer
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 5.6 years ago by TriS • 4.3k • updated 14 months ago by jnmcluo • 0
272
votes
11
answers
33k
views
196 follow
11
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Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
forum papers tutorial rna-seq sequencing written 5.1 years ago by CandiceChuDVM • 2.2k
126
votes
1
answer
28k
views
117 follow
1
answer
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 3.3 years ago by Kevin Blighe ♦ 70k
146
votes
9
answers
55k
views
77 follow
9
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 8.0 years ago by Nicolas Rosewick ♦ 9.3k • updated 2.9 years ago by kristoffer.vittingseerup • 3.5k
98
votes
3
answers
23k
views
75 follow
3
answers
Tutorial: Guide to TCGA data
cancer tutorial tcga rna-seq tools clinical written 5.0 years ago by Jordan Anaya • 1.1k • updated 4.2 years ago by ewre • 240
59
votes
0
answers
18k
views
69 follow
0
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Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
tutorial rna-seq written 7.0 years ago by Istvan Albert ♦♦ 86k • updated 9 months ago by Ram ♦ 32k
98
votes
6
answers
71k
views
67 follow
6
answers
How Much Coverage Do We Need For An Rna-Seq Experiment?
coverage rna-seq written 8.0 years ago by Obi Griffith ♦ 19k
91
votes
7
answers
17k
views
63 follow
7
answers
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
next-gen forum rna-seq exome wgs n-of-one written 6.8 years ago by Obi Griffith ♦ 19k
64
votes
3
answers
22k
views
62 follow
3
answers
Tutorial: Rna-Seq Review Papers
tutorial papers rna-seq written 8.5 years ago by Istvan Albert ♦♦ 86k • updated 5.1 years ago by art.matysik • 0
137
votes
5
answers
30k
views
60 follow
5
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 7.3 years ago by sckinta • 600 • updated 21 months ago by lffu_0032 • 60
66
votes
3
answers
21k
views
59 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 7.4 years ago by Irsan • 7.3k • updated 4 months ago by Ram ♦ 32k
100
votes
17
answers
35k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.7 years ago by KS • 370 • updated 15 days ago by Biostar ♦♦ 20
74
votes
1
answer
29k
views
53 follow
1
answer
PCA plot from read count matrix from RNA-Seq
pca rna-seq written 3.3 years ago by rachel.kubik12 • 150 • updated 20 months ago by mayankkaashyap • 30
131
votes
8
answers
34k
views
50 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.9 years ago by lh3 ♦ 32k • updated 4.9 years ago by Michael Dondrup ♦ 48k
104
votes
2
answers
18k
views
50 follow
2
answers
PCA in a RNA seq analysis
pca rna-seq written 3.3 years ago by Mozart • 250 • updated 2.3 years ago by Giovanni M Dall'Olio ♦ 27k
63
votes
1
answer
5.6k
views
46 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 5.6 years ago by geek_y ♦ 11k • updated 5.3 years ago by Malachi Griffith ♦ 18k
57
votes
1
answer
68k
views
46 follow
1
answer
Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene expression blog rna-seq written 3.4 years ago by Renesh • 2.0k
84
votes
5
answers
37k
views
44 follow
5
answers
Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 8.3 years ago by siddharth.sethi5 • 260 • updated 7.2 years ago by earonesty • 240
58
votes
1
answer
18k
views
37 follow
1
answer
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
bitseq cufflinks salmon kallisto rna-seq written 5.5 years ago by IV • 1.3k
49
votes
0
answers
37k
views
35 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.9 years ago by Sukhi Singh ♦ 10k • updated 5.1 years ago by Shicheng Guo • 8.5k
47
votes
2
answers
25k
views
35 follow
2
answers
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
rna-seq written 6.6 years ago by thisismytest3023 • 180 • updated 5.8 years ago by juara • 30
47
votes
2
answers
199k
views
34 follow
2
answers
Understanding up and down regulated genes from LOG2 foldchange or foldchange
gene tutorial expression protein rna-seq written 6.8 years ago by Whoknows • 860 • updated 3.7 years ago by FatihSarigol • 200
97
votes
8
answers
29k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 8.1 years ago by Lisa • 320 • updated 6.0 years ago by n124080 • 10
37
votes
0
answers
1.9k
views
32 follow
0
answers
Tutorial: Gene Set Enrichment Analysis
enrichment tutorial microarray rna-seq gsea written 4 months ago by Hamid Ghaedi • 1.2k
77
votes
3
answers
8.0k
views
31 follow
3
answers
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
R next-gen alignment rna-seq assembly written 17 months ago by Wox • 440
30
votes
0
answers
2.1k
views
31 follow
0
answers
Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
batch correction tutorial ma-plot rna-seq edger written 5 months ago by ATpoint ♦ 45k
48
votes
5
answers
36k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 8.1 years ago by biorepine • 1.5k • updated 5.7 years ago by Malachi Griffith ♦ 18k
46
votes
3
answers
97k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.9 years ago by biorepine • 1.5k • updated 15 months ago by Renesh • 2.0k
48
votes
2
answers
6.0k
views
30 follow
2
answers
Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 3.6 years ago by sonpham • 570
47
votes
1
answer
3.7k
views
29 follow
1
answer
What is the best way to combine machine learning algorithms for feature selection such as Variable importance in Random Forest with differential expression analysis?
rna-seq written 2.9 years ago by elmahy2005 • 100 • updated 16 months ago by CY • 560
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