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single cell RNA seq Differential Expression using MAST
next-gen rna-seq sequencing written 12 minutes ago by quintanamaster • 0 • updated 10 minutes ago by ATpoint ♦ 32k
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19
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Error in Bowtie2
rna-seq written 1 hour ago by rasoulfarzaneh • 0 • updated 1 hour ago by Kevin Blighe ♦ 56k
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98
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0
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Trimmomatic job won't end
software error trimming rna-seq written 4 days ago by James Clark • 0 • updated 2 hours ago by rasoulfarzaneh • 0
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0
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851
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PacBio data problem
rna-seq written 3.6 years ago by Alex • 30 • updated 3 hours ago by Biostar ♦♦ 20
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1
answer
26
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1
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Issue separating mate pair fastq files from a paired-end sequencing dataset
fastq next-gen rna-seq sequencing written 9 hours ago by marvel479 • 0 • updated 6 hours ago by ATpoint ♦ 32k
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50
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How should I handle mapping to incomplete genome with many homologous regions?
rna-seq written 5 days ago by O.rka • 170 • updated 21 hours ago by Biostar ♦♦ 20
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2
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73
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5 follow
2
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How to convert ENSEMBL gene IDs to nucleotide sequences?
gene assembly sequence rna-seq sequencing written 1 day ago by harshraje19 • 20 • updated 1 day ago by genomax ♦ 80k
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2
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66
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2
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How reliable are the ensembl transcript isoforms?
ensembl rna-seq isoform written 1 day ago by simplitia • 30 • updated 1 day ago by vkkodali • 1.9k
3
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2
answers
91
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5 follow
2
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Genes Symbol Conversion not in biomaRt
gene rna-seq written 1 day ago by bazok • 0
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46
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How do I know Seurat operates on what data? Raw count or scaled.data
rna-seq written 1 day ago by 18982289189 • 0
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39
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0
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HIV NL4-3 transcriptome fasta
clip-seq rna-seq written 1 day ago by xiaoleiusc • 20
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0
answers
61
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reprocessing rna sequencing data
rna-seq written 2 days ago by M.Mohareb • 0
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44
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junction track for HiSat
rna-seq written 2 days ago by ys19f • 0
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111
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0
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Heatmap position amplification
R rna-seq written 2 days ago by skjobs0123 • 70 • updated 2 days ago by genomax ♦ 80k
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71
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STAR Sjdboverhang value
star rna-seq written 2 days ago by sallyey2 • 0
3
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1
answer
81
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1
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which normalization method for my RNA-seq data set?
deseq2 tpm rna-seq edger tmm written 2 days ago by nyoegut • 10 • updated 2 days ago by genomax ♦ 80k
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51
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CIBERSORT input file format
cibersort rna-seq written 3 days ago by Sara • 90 • updated 3 days ago by Pierre Lindenbaum ♦ 127k
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68
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0
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filtering unmapped and multiple mapped reads
smatools filtering rna-seq written 3 days ago by aapapaiwannou • 10
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49
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Does bcftools distinguish between two gene copies on the bacterial genome ?
bacteria bcftools rna-seq snp written 3 days ago by praneeth.bommisetti • 0 • updated 3 days ago by genomax ♦ 80k
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1
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RNA-seq cluster analysis in R
R k-means rna-seq clustering written 22 months ago by MarjoryMollusc • 50 • updated 3 days ago by Biostar ♦♦ 20
1
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1
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54
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1
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Snakemake - Missing MissingInputException in line 20: Missing input files for rule stringt:
snakefile stringtie snakemake rna-seq hisat2 written 3 days ago by shivani.avera • 0 • updated 3 days ago by Asaf ♦ 7.3k
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3
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7 follow
3
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 22 months ago by grant.hovhannisyan • 1.9k • updated 3 days ago by leonardo.araque • 0
1
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1
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65
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1
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Indentify character and keep corressponding character from bottom two rows
rna-seq written 4 days ago by waqaskhokhar999 • 80 • updated 3 days ago by JC ♦ 9.7k
1
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0
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46
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0
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DESeq normalized values and RNA-seq analysis in Galaxy
sequence galaxy rna-seq sequencing written 3 days ago by pritbennymalgulwar • 0
1
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0
answers
78
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0
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STAR genome index Error
star rna-seq index written 4 days ago by sallyey2 • 0
3
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1
answer
79
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1
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What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative value?
genome gene rna-seq R written 4 days ago by Wox • 320 • updated 4 days ago by Istvan Albert ♦♦ 83k
11
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4
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129
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5 follow
4
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Conversion of Gene Name to Ensembl ID
gene R rna-seq genome written 4 days ago by bazok • 0
16
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2
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165
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6 follow
2
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Only doing log2 transformation for RNAseq read count data without normalizing by DESeq2 ??!
deseq2 readcount rna-seq log2 written 4 days ago by Raheleh • 140 • updated 4 days ago by ATpoint ♦ 32k
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55
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What are recommended parameters for removing rRNA from meta[transcript][gen]omics using bbduk.sh?
metagenomics rna-seq written 4 days ago by O.rka • 170
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51
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0
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PureClip to analyze CLIP-SEQ
rna-seq sequencing written 4 days ago by qicaibiology • 40 • updated 4 days ago by genomax ♦ 80k
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