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<prev • 9,324 results • page 1 of 311 • next >
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Filtering reads on the basis of percentage of ambiguous(N's) characters
filter fastq rna-seq written 5 hours ago by Varun Gupta • 1000 • updated 3 hours ago by Pierre Lindenbaum ♦ 108k
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54
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Error message on cufflinks: ImportError
cufflinks rna-seq written 9 hours ago by florian.laforets • 0 • updated 3 hours ago by Kevin Blighe ♦ 21k
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Issue with creating table counts using StringTie *without* using a reference annotation file (GTF)
assembly rna-seq written 6 days ago by catglen012 • 0 • updated 3 hours ago by h.mon ♦ 15k
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Doing interspecies comparison using publicly deposited RNA-seq data
rna-seq interspecies comparison written 4 hours ago by amy.bashir • 80
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6 follow
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How can i do enrichment analysis more precisely for differential expression analysis results ?
rna-seq written 1 day ago by fereshteh • 10
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26
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Inferring genotype based on RNA sequnces
rna-seq snp written 6 hours ago by omer.k • 20
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mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 7 hours ago by salamandra • 130 • updated 6 hours ago by Charles Warden ♦ 5.0k
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10 follow
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how to analyze synteny between 4 genomes. please suggest suitable tool
assembly next-gen rna-seq sequencing written 17 days ago by kaurjaimeet911 • 10 • updated 8 hours ago by Kevin Blighe ♦ 21k
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69
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 9 hours ago by brieannsobieski • 0
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9 follow
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Volcano plot help code
R rna-seq written 9 weeks ago by anasofiamoreira94 • 0 • updated 11 hours ago by jordi.planells • 0
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1
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48
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1
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plant long non-coding RNA
rna-seq lncrna written 13 hours ago by Sam • 70 • updated 12 hours ago by colindaven • 690
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50
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gene IDs in stringtie output
rna-seq written 12 hours ago by blooming.daisy333 • 0
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How can I analyze more than two conditions in DESeq2?
deseq2 rna-seq written 14 hours ago by Lila M • 370 • updated 14 hours ago by Lisa Ha • 40
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5 follow
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 14 hours ago by ravi • 20
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Is it correct if we use htseq counts as raw read counts in DESEq2?
htseqcounts deseq2 rna-seq written 17 hours ago by nazaninhoseinkhan • 240 • updated 16 hours ago by Devon Ryan ♦ 80k
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74
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Fusion gene detection in sam file
fusion rna-seq nanopore ont written 4 days ago by pennakiza • 10 • updated 1 day ago by Kevin Blighe ♦ 21k
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1
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78
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1
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Gene-based clustering of RNA-seq data
clustering gene-based clustering deseq2 rna-seq written 1 day ago by IrK • 20 • updated 1 day ago by Kevin Blighe ♦ 21k
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Best method for orthology prediction of more than two protein datasets
genome rna-seq written 1 day ago by ariannapbartlett • 0 • updated 1 day ago by Jean-Karim Heriche ♦ 15k
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92
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Extract uniquely mapped reads from one species
dual rna-seq host-pathogen rna-seq written 1 day ago by PSB • 0 • updated 1 day ago by goodez • 160
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Could somebody suggest free pathway visualization tool for omics data from plants?
pathways vizualization rna-seq written 1 day ago by rimgubaev • 0 • updated 1 day ago by Antonio R. Franco • 3.7k
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Using the location of lncRNA and find the up and downstream gene
genome rna-seq written 1 day ago by snsunlee123 • 0 • updated 1 day ago by WouterDeCoster ♦ 29k
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Splice junction sites and number of splitted reads from STAR aligned bam
sashimi plot rna-seq splice junctions written 2 days ago by filippo.martignano • 0 • updated 1 day ago by trausch • 1.0k
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Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 2 days ago by freuv • 10 • updated 1 day ago by Emily_Ensembl ♦ 15k
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88
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5 follow
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The best way to produce gene body coverage
rna-seq written 1 day ago by Javad • 0 • updated 1 day ago by Antonio R. Franco • 3.7k
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What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
single-cell rna-seq written 2 days ago by wangdp123 • 110 • updated 1 day ago by Devon Ryan ♦ 80k
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FeatureCounts summarizing at exon level
featurecounts rna-seq exon written 3 days ago by yamar • 0 • updated 1 day ago by dbpzdbpz • 90
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3
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5 follow
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 2 days ago by rsafavi • 20
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Tutorial: Principal Component Analysis (PCA ON T-BIOINFO)
tutorial next-gen rna-seq written 1 day ago by elia.brodsky • 230
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54
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paired analysis ballgown
rna-seq written 1 day ago by zoegward • 40
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Tool: T-BioInfo - an intuitive interface for complex bioinformatics tasks
next-gen tool chip-seq snp alignment rna-seq written 2 days ago by elia.brodsky • 230
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