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0
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2
answers
50
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2
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How reliable are the ensembl transcript isoforms?
ensembl rna-seq isoform written 14 hours ago by simplitia • 30 • updated 22 minutes ago by vkkodali • 1.9k
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1
answer
35
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1
answer
How to convert ENSEMBL gene IDs to nucleotide sequences?
gene assembly sequence rna-seq sequencing written 8 hours ago by harshraje19 • 20 • updated 5 hours ago by Jean-Karim Heriche ♦ 21k
0
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1
answer
57
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1
answer
Genes Symbol Conversion not in biomaRt
gene rna-seq written 11 hours ago by bazok • 0
0
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0
answers
33
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0
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How do I know Seurat operates on what data? Raw count or scaled.data
rna-seq written 9 hours ago by 18982289189 • 0
0
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0
answers
29
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0
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HIV NL4-3 transcriptome fasta
clip-seq rna-seq written 10 hours ago by xiaoleiusc • 20
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0
answers
59
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0
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reprocessing rna sequencing data
rna-seq written 1 day ago by M.Mohareb • 0
0
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0
answers
41
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0
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junction track for HiSat
rna-seq written 1 day ago by ys19f • 0
0
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0
answers
108
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0
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Heatmap position amplification
R rna-seq written 1 day ago by skjobs0123 • 70 • updated 1 day ago by genomax ♦ 80k
1
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0
answers
66
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0
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STAR Sjdboverhang value
star rna-seq written 1 day ago by sallyey2 • 0
3
votes
1
answer
75
views
1
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which normalization method for my RNA-seq data set?
deseq2 tpm rna-seq edger tmm written 1 day ago by nyoegut • 10 • updated 1 day ago by genomax ♦ 80k
0
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1
answer
85
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5 follow
1
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Trimmomatic job won't end
software error trimming rna-seq written 3 days ago by James Clark • 0 • updated 1 day ago by rasoulfarzaneh • 0
0
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0
answers
48
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0
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CIBERSORT input file format
cibersort rna-seq written 1 day ago by Sara • 90 • updated 1 day ago by Pierre Lindenbaum ♦ 127k
0
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0
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65
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0
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filtering unmapped and multiple mapped reads
smatools filtering rna-seq written 2 days ago by aapapaiwannou • 10
0
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0
answers
46
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0
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Does bcftools distinguish between two gene copies on the bacterial genome ?
bacteria bcftools rna-seq snp written 2 days ago by praneeth.bommisetti • 0 • updated 2 days ago by genomax ♦ 80k
1
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1
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2.2k
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1
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RNA-seq cluster analysis in R
R k-means rna-seq clustering written 22 months ago by MarjoryMollusc • 50 • updated 2 days ago by Biostar ♦♦ 20
1
vote
1
answer
53
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1
answer
Snakemake - Missing MissingInputException in line 20: Missing input files for rule stringt:
snakefile stringtie snakemake rna-seq hisat2 written 2 days ago by shivani.avera • 0 • updated 2 days ago by Asaf ♦ 7.3k
5
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3
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2.7k
views
7 follow
3
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LEADING and TRAILING in TRIMMOMATIC
trimmomatic rna-seq written 22 months ago by grant.hovhannisyan • 1.9k • updated 2 days ago by leonardo.araque • 0
1
vote
1
answer
63
views
1
answer
Indentify character and keep corressponding character from bottom two rows
rna-seq written 2 days ago by waqaskhokhar999 • 80 • updated 2 days ago by JC ♦ 9.7k
1
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0
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45
views
0
answers
DESeq normalized values and RNA-seq analysis in Galaxy
sequence galaxy rna-seq sequencing written 2 days ago by pritbennymalgulwar • 0
1
vote
0
answers
76
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0
answers
STAR genome index Error
star rna-seq index written 2 days ago by sallyey2 • 0
3
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1
answer
77
views
1
answer
What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative value?
genome gene rna-seq R written 3 days ago by Wox • 320 • updated 3 days ago by Istvan Albert ♦♦ 83k
11
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4
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120
views
5 follow
4
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Conversion of Gene Name to Ensembl ID
gene R rna-seq genome written 3 days ago by bazok • 0
16
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2
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163
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6 follow
2
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Only doing log2 transformation for RNAseq read count data without normalizing by DESeq2 ??!
deseq2 readcount rna-seq log2 written 3 days ago by Raheleh • 140 • updated 3 days ago by ATpoint ♦ 32k
0
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0
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53
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0
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What are recommended parameters for removing rRNA from meta[transcript][gen]omics using bbduk.sh?
metagenomics rna-seq written 3 days ago by O.rka • 170
0
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0
answers
49
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0
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PureClip to analyze CLIP-SEQ
rna-seq sequencing written 3 days ago by qicaibiology • 40 • updated 3 days ago by genomax ♦ 80k
1
vote
1
answer
69
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1
answer
How to round the "expected counts" to integers?
deseq2 expected counts rna-seq written 4 days ago by joanna • 0 • updated 3 days ago by ATpoint ♦ 32k
0
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1
answer
865
views
1
answer
RSeQC geneBody_coverage and RPKM_saturation result exlaination
genome alignment next-gen rna-seq sequencing written 2.6 years ago by Hughie • 80 • updated 3 days ago by gmacnunn • 0
6
votes
1
answer
78
views
1
answer
Find a path to STAR
alignment star rna-seq written 3 days ago by sallyey2 • 0
2
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0
answers
159
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0
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Single cell RNA vs ATAC seq
rna-seq written 21 days ago by golden • 0 • updated 3 days ago by Biostar ♦♦ 20
0
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2
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141
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2
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What is the best way to analyze and enrich a list of DE genes from RNAseq?
R bioinformatics enrichment rna-seq pathways written 7 days ago by miky.zo • 0
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