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<prev • 229 results • page 1 of 8 • next >
4
votes
2
answers
61
views
2
answers
DEGs from *genes.results or *isoforms.results
assembly alignment rna-seq written 17 hours ago by GP • 10
0
votes
1
answer
973
views
1
answer
rsem-calculate-expression error SAM/BAM file declares more reference sequences than Rsem
rna-seq written 11 months ago by sbhattach2 • 0 • updated 3 hours ago by zzyh610 • 0
2
votes
2
answers
48
views
2
answers
padj in DEseq2
rna-seq written 6 hours ago by mxlsherry1992 • 30 • updated 5 hours ago by Brice Sarver • 3.1k
0
votes
0
answers
45
views
0
answers
STAR mapping parameter
rna-seq written 6 hours ago by mxlsherry1992 • 30
0
votes
0
answers
51
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0
answers
3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 10 hours ago by gmchaput • 0
1
vote
0
answers
34
views
0
answers
CLC not outputting or showing table from Fisher's Exact Test
fisher's exact test clc fisher blast2go rna-seq written 10 hours ago by jjrin • 10
2
votes
0
answers
129
views
0
answers
Range of TPM values in a dataset
rna-seq sequencing written 3 days ago by Nimzo • 10
0
votes
0
answers
32
views
0
answers
Using predicted secreted proteins to match Differentially Expressed genes
rna-seq written 12 hours ago by aiderthetater • 0
2
votes
0
answers
68
views
0
answers
Extracting the reads counts (coverage) a specific variant allele from a Fastq file
rna-seq snp sequencing written 13 hours ago by a.james • 210
7
votes
1
answer
155
views
1
answer
Difference between abundance and counts in RNA-Seq
tximport rna-seq written 1 day ago by chahat_u • 140
0
votes
0
answers
44
views
0
answers
Defining the design for a complicated multi-level experiment in Limma
R limma rna-seq voom written 16 hours ago by Colari19 • 0
7
votes
0
answers
172
views
5 follow
0
answers
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
rna-seq differential expression written 19 hours ago by guillaume.rbt • 670
6
votes
0
answers
1.9k
views
0
answers
GMAP aligner issues
gmap aligner rna-seq written 23 months ago by KVC_bioinfo • 410 • updated 21 hours ago by lieven.sterck ♦ 6.1k
0
votes
0
answers
30
views
0
answers
Any absolute quantification method for detection of polyploidy tumor sample
rna-seq pcr written 21 hours ago by CY • 410
1
vote
1
answer
76
views
1
answer
How can I select highly variable genes from the RNASeq gene dataset?
significant rna-seq written 22 hours ago by naseerkhan861 • 0 • updated 22 hours ago by Michael Dondrup ♦ 46k
22
votes
1
answer
1.9k
views
12 follow
1
answer
What is the best way to combine machine learning algorithms for feature selection such as Variable importance in Random Forest with differential expression analysis?
rna-seq written 19 months ago by elmahy2005 • 40 • updated 22 hours ago by CY • 410
0
votes
0
answers
71
views
0
answers
Question: KEGGREST -- Compounds list for full organism -- KEGG metabolic Pathways
rna-seq written 1 day ago by v.perlo • 0
0
votes
0
answers
62
views
0
answers
Issue with topGO output -- Number annotated genes
rna-seq written 1 day ago by javiercalvelo7 • 0
1
vote
0
answers
67
views
0
answers
Tracing back files used in CLC Genomics?
clc fisher blast2go blast rna-seq written 1 day ago by jjrin • 10
2
votes
1
answer
99
views
1
answer
Allelic-Specific RNA-Seq pipeline
allelic-specific-rna-seq rna-seq expression written 1 day ago by giovannaventola3es9 • 30
1
vote
1
answer
997
views
1
answer
Is it possible to run an Allele Specific Expression (ASE) experiment with just RNA-Seq data?
ase rna-seq written 3.3 years ago by utsafar • 20 • updated 1 day ago by giovannaventola3es9 • 30
0
votes
1
answer
141
views
1
answer
How to count and compare k-mer count vectors (and print the top ten highest contributions)?
fasta kmers sequence rna-seq count vectors written 3 days ago by nihaldm169 • 0 • updated 1 day ago by Joe ♦ 14k
1
vote
0
answers
82
views
0
answers
lincRNA in single cell RNAseq
rna-seq written 2 days ago by kanwarjag • 1000
0
votes
1
answer
107
views
1
answer
RNA sequencing how to see expression value
rna-seq written 2 days ago by mxlsherry1992 • 30
1
vote
0
answers
134
views
0
answers
Job: Computational biologist / Bioinformatician I & II at University of Texas Southwestern Medical Center at Dallas
chip-seq job snp sequencing R rna-seq written 2 days ago by chao.xing • 20
0
votes
1
answer
72
views
1
answer
Blast2Go annotation question
rna-seq written 2 days ago by mxlsherry1992 • 30 • updated 2 days ago by Mensur Dlakic • 1.8k
0
votes
0
answers
73
views
0
answers
Infer Experiment strand information interpretation
stranded rna-seq rseqc written 2 days ago by dnzkursun • 0 • updated 2 days ago by genomax ♦ 73k
0
votes
1
answer
100
views
1
answer
Interpret Cbioportal output
sequence rna-seq written 5 weeks ago by rob.costa1234 • 180 • updated 2 days ago by gable_works • 20
0
votes
0
answers
72
views
0
answers
How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome written 2 days ago by alex.zaccaron • 90
1
vote
1
answer
71
views
1
answer
same query but different results (TCGAbiolinks vs TCGA Portal)
R rna-seq written 2 days ago by tyasird • 0 • updated 2 days ago by dsull • 210
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