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<prev • 278 results • page 1 of 10 • next >
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Best practices in eQTL analysis
eqtl rna-seq written 5 minutes ago by i.sudbery ♦ 8.4k
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RNA-Seq Star-Cuffdiff Pipeline error message after changing c parameter in cuffdiff
assembly sequence rna-seq sequencing written 2 hours ago by akashagri19 • 0 • updated 1 hour ago by i.sudbery ♦ 8.4k
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RNA-Seq heatmap Scaling Problem
R next-gen rna-seq sequencing written 1 hour ago by akashagri19 • 0
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IsoEM trying to run quantification but just prints out manual
quantification rna-seq isoem isoem2 written 4 weeks ago by mar77 • 0 • updated 2 hours ago by Biostar ♦♦ 20
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1
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907
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1
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Read mapping problem with STAR
alignment rna-seq written 2.2 years ago by Ricky • 30 • updated 8 hours ago by Biostar ♦♦ 20
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53
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EdgeR matrix design and comparisons for paired samples
rna-seq edger written 1 day ago by silas008 • 130 • updated 14 hours ago by h.mon ♦ 30k
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MAGeCK vs MWU CRISPR Screen Tests
analysis rna-seq statistics written 16 hours ago by Scott McKay • 20 • updated 15 hours ago by dsull • 1.5k
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38
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can't run Aracne -- Java error
network rna-seq aracne written 16 hours ago by rioualen • 410
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FastqToSam (Picard) syntax paired-end reads
rna-seq sequencing written 21 hours ago by esteban.peguero • 0 • updated 20 hours ago by h.mon ♦ 30k
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1
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GSVA example leukemia returns a 'NULL' object
gsva rna-seq written 1 day ago by mbk0asis • 550 • updated 23 hours ago by Kevin Blighe ♦ 63k
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Trouble with choosing the right reference transcriptome file for mm10
genome salmon kallisto rna-seq sequencing written 1 day ago by wyoo083 • 0
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203
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1
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Normalization for comparing expression statistics across sample and gene groups
normalization gene sets rna-seq written 4 months ago by endre.sebestyen • 10 • updated 1 day ago by kristoffer.vittingseerup • 3.4k
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Construct Heatmap and Cut Clusters
R rna-seq written 1 day ago by pthom010 • 0
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165
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How to split SAM file to different chromosomes
assembly rna-seq written 3 months ago by javanokendo • 0 • updated 1 day ago by Biostar ♦♦ 20
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8 follow
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Create table of gene expression for multiple samples
hisat stringtie rna-seq written 2 days ago by microbiotaiota • 10 • updated 1 day ago by Kevin Blighe ♦ 63k
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GSVA on enrichment scores about R project
R gsva rna-seq written 15 months ago by 1466956114 • 0 • updated 1 day ago by DBScan • 20
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1
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Recommendation for packages for cell type deconvolution from bulk RNAseq data?
deconvolution rna-seq cell type written 11 weeks ago by bioinfouser • 70 • updated 1 day ago by xinyiy027 • 0
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EdgeR and contrasts: How to compare with a group not in the model
R makecontrasts model.matrix rna-seq edger written 3 days ago by 13530213 • 10
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Gene expression variability
gene next-gen rna-seq written 2 days ago by reara • 10 • updated 2 days ago by Nicolas Rosewick ♦ 9.0k
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Heatmap for gene expression
R rna-seq sequencing written 2 days ago by akashagri19 • 0
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PCA loadings/roation : different variables depending on the code
factominer loading pca rna-seq prcomp written 2 days ago by camillab. • 10 • updated 2 days ago by Kevin Blighe ♦ 63k
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Is it feasible to look for mutations in RNA-seq data from FFPE samples?
gene R rna-seq snp written 2 days ago by danson.wooi • 0
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star --readFilesIn error when using unmapped.out.mate1/2 files
star rna-seq written 2 days ago by kokoko • 0
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73
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Heatmap with VST Normailzed Data
R rna-seq written 2 days ago by pthom010 • 0
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48
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Paired Testing in EdgeR: Addressing patient specific response (in only one patient)
paired_testing rna-seq edger R written 2 days ago by accio • 0
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70
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How should I analyze the following dataset (GSE150847)?
R bioconductor rna-seq written 2 days ago by arjuncsubra • 0
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167
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6 follow
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RNA-Seq differential gene expression without biological and technical replicates.
rna-seq written 22 days ago by utsafar • 40 • updated 2 days ago by a410638758 • 0
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determining read-depth of given size of genomic window via samtools
read-depth next-gen samtools rna-seq written 2 days ago by ella • 0
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79
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Which is the best approach to get DEG across one condition, in a three-factor design experiment?
rna-seq edger written 3 days ago by antonioggsousa • 860 • updated 2 days ago by Devon Ryan ♦ 96k
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How to do GO annotation with non-model animal
rna-seq written 2.6 years ago by jiang_lan • 0 • updated 2 days ago by Biostar ♦♦ 20
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