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3
votes
1
answer
39
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1
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bwa job - error with file size
fastq alignment bwa rna-seq sam written 4 hours ago by Laura SMC • 0
2
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2
answers
123
views
2
answers
How to get ENTREZ ID and SYMBOL to my gene notation in Saccharomyces cerevisiae
rna-seq written 1 day ago by cesarihv7 • 0
3
votes
1
answer
101
views
1
answer
Measure expression level of a single (novel) transcript in multiple fastq files
rna-seq written 16 hours ago by chahat_u • 110
1
vote
1
answer
97
views
1
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how to download text format annotation file for hg38 genome?
rna-seq written 18 hours ago by istloui1 • 0 • updated 17 hours ago by lieven.sterck ♦ 5.2k
0
votes
0
answers
75
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0
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Job: Bioinformatics Specialist, Great Lakes Genomics Center, Milwaukee WI
whole genome assembly 16s job rna-seq written 18 hours ago by angelas • 0
1
vote
1
answer
124
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1
answer
EnhancedVolcano, selectLab highlights nothing
rna-seq written 5 weeks ago by FallingBabyEagle • 0 • updated 18 hours ago by Biostar ♦♦ 20
4
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1
answer
835
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5 follow
1
answer
Getting just fastqc.zip file?
rna-seq fastqc written 15 months ago by star • 150 • updated 19 hours ago by vinay.rs • 10
0
votes
0
answers
65
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0
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Wrong results in differential gene expression analysis
tool rna-seq written 21 hours ago by banerjeeshayantan • 110 • updated 21 hours ago by Asaf ♦ 5.7k
1
vote
1
answer
78
views
1
answer
SNPs from RNA-Seq Compare with SNPs from DNA-Seq
genome assembly alignment rna-seq written 1 day ago by drragill • 0 • updated 22 hours ago by shawn.w.foley • 720
1
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0
answers
58
views
0
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Pathway based data integration and Visualization with gene ortholog
R rna-seq written 22 hours ago by lucatucciarone • 50
0
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0
answers
39
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0
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The error in erccdashboard
software error R rna-seq written 1 day ago by codezy • 10
2
votes
2
answers
201
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2
answers
denovo transcriptome assembly
assembly rna-seq written 8 days ago by 1234anjalianjali1234 • 30 • updated 1 day ago by colindaven • 1.3k
0
votes
0
answers
38
views
0
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Find the nearest 10 peaks for specific gene using GRanges
gene R atac rna-seq written 1 day ago by myny94 • 0
0
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0
answers
79
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0
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select of genes
rna-seq written 1 day ago by mlemusfuentes • 10
0
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1
answer
174
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1
answer
Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
isoformswitchanalyzer rna-seq written 6 weeks ago by dina.hesham139 • 120 • updated 1 day ago by liuwei • 0
13
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2
answers
135
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2
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What are the best set of options to use while aligning using STAR?
ngs alignment star rna-seq written 4 days ago by gprashant17 • 40 • updated 1 day ago by Charles Warden ♦ 6.9k
0
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0
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201
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0
answers
Job: Genomics Core Manager - Fort Lauderdale, FL
next-gen job rna-seq sequencing written 5 weeks ago by stavakoli • 0
2
votes
0
answers
62
views
0
answers
HISAT2 alignment out of memory
assembly next-gen alignment rna-seq written 1 day ago by psschlogl • 0
0
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0
answers
56
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0
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Is there any other tool to analysis Target gene based on Chip-seq and RNA-seq joint analysis result
joint-analysis chip-seq rna-seq written 2 days ago by harrypotterandsbt • 10
1
vote
1
answer
110
views
1
answer
which data is more suitable for Heatmap?
next-gen rna-seq edger heatmap written 2 days ago by star • 150 • updated 2 days ago by ATpoint ♦ 18k
9
votes
2
answers
121
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 2 days ago by alexis.groppi • 30
2
votes
1
answer
47
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1
answer
Pathway Enrichment on lncRNAs
rna-seq written 2 days ago by glady • 250 • updated 2 days ago by i.sudbery ♦ 4.8k
2
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0
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133
views
5 follow
0
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retrieving survival informations from cBioportal using Rstudio
gene R rna-seq survival written 9 days ago by ghadou.ouss • 0 • updated 2 days ago by Biostar ♦♦ 20
5
votes
0
answers
143
views
0
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How do I find the same gene in two different assemblies?
genome assembly alignment rna-seq written 4 weeks ago by jstevenson2256 • 10 • updated 3 days ago by Biostar ♦♦ 20
1
vote
1
answer
136
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1
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DeSeq2 error correction and experiment design
R rna-seq written 3 days ago by ab • 0
0
votes
0
answers
91
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0
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too few significant regions by q-value using DER Finder
R rna-seq written 3 days ago by pourjam.cs • 0
11
votes
1
answer
159
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5 follow
1
answer
Forum: Bioinformatics Workstation Suggestions
forum next-gen rna-seq workstation written 4 days ago by akh22 • 30 • updated 3 days ago by Dave Carlson • 90
4
votes
1
answer
71
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1
answer
SAM doubt about sampileup
sequence rna-seq written 3 days ago by psschlogl • 0 • updated 3 days ago by Pierre Lindenbaum ♦ 120k
1
vote
1
answer
105
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1
answer
Obtaining a TPM matrix from counts
R rna-seq written 4 days ago by tadasbar • 0
0
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1
answer
64
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1
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How to prepare trait data file of categorical trait with more than two levels for WGCNA?
R rna-seq wgcna written 4 days ago by Reza • 0 • updated 4 days ago by Kevin Blighe ♦ 44k
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