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What happens to intermediate Trinity files when assembly terminated pre-completion
trinity rna-seq written 16 months ago by peri.tobias • 0 • updated 53 minutes ago by Biostar ♦♦ 20
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1
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79
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1
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Forum: Pipeline suggestions for GO & pathway analysis for species without reference genome
de-novo forum next-gen rna-seq denovo written 19 hours ago by Whoknows • 510 • updated 1 hour ago by Istvan Albert ♦♦ 71k
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48
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1
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Inconsistency Between Cufflinks And Cuffdiff
rna cufflinks cuffdiff rna-seq written 9 hours ago by vm.higareda • 0 • updated 2 hours ago by Istvan Albert ♦♦ 71k
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1
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45
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1
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RSEM HTSeq unique reads
rna-seq written 15 hours ago by riccardo • 10 • updated 12 hours ago by h.mon ♦ 5.8k
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1
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69
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1
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Best statistical test for 1 vs 2 replicates
rna-seq written 15 hours ago by amnoronha1016 • 10 • updated 12 hours ago by h.mon ♦ 5.8k
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1
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is there a value of ranking genes based on p-value in RNA-seq data
rna-seq written 1 day ago by CrazyB • 180 • updated 12 hours ago by h.mon ♦ 5.8k
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1
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1
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Error: Pathway analysis using Sleuth results
R sleuth pathview rna-seq gage written 4 months ago by bioinfo8 • 60 • updated 14 hours ago by bigmawen • 190
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1
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49
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1
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Error in DADA2
software error R next-gen rna-seq sequencing written 14 hours ago by saiprabhask4 • 0 • updated 14 hours ago by genomax ♦ 28k
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37
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Transcript to gene mapping of overlapping transcripts from cuffcompare
de novo assembly rna-seq classcode 0 written 14 hours ago by sunil.mangalam • 10
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1
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46
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1
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.clc to fastq
rna-seq clc work bench written 15 hours ago by Kasthuri • 210
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1
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55
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1
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DESeq2 + de novo assembly
de novo trinity deseq2 rna-seq dge written 22 hours ago by pablo61991 • 0 • updated 21 hours ago by Biojl • 1.4k
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1
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54
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1
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Gene length from a GFF file to count RPKM for edgeR-RNA-seq analysis
rna-seq written 21 hours ago by pixie@bioinfo • 1.1k • updated 21 hours ago by Istvan Albert ♦♦ 71k
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Multiple sam to bam followed by raw read count
rna-seq written 1 day ago by nabiyogesh • 50
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54
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RNA-Seq Data analysis FPKM values mostly showing 0
assembly rna-seq rseqc written 1 day ago by simang5c • 10
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66
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p value of RNA editing
rna-seq written 2 days ago by Ben • 20
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2
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145
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5 follow
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathway R rna-seq gsea gage written 22 days ago by snishtala03 • 0 • updated 1 day ago by bigmawen • 190
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1
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75
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De novo transcriptome assembly of low amount of Illumina reads with MIRA
de novo mira rna-seq written 3 days ago by Andrés Ribone • 0 • updated 1 day ago by h.mon ♦ 5.8k
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65
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Is it necessary to scale CpG data while using partitioning method and hierarchical clustering as a surrogate for reducing differentially methylated CpG sites for validation from 450k?
kmeans methylation rna-seq clustering cpg written 1 day ago by vchris_ngs • 3.1k
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60
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How to find novel gene/isoform in 1 RNA-SEQ sample?
next-gen rna-seq written 1 day ago by Whoknows • 510 • updated 1 day ago by EagleEye • 3.8k
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Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 13 months ago by debitboro • 50 • updated 1 day ago by h.mon ♦ 5.8k
1
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1
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64
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RNA-seq Hiseq 2000 Trimming
rna-seq written 1 day ago by valopes • 0 • updated 1 day ago by genomax ♦ 28k
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precursor miRNAs from TCGA
precursor-mirnas tcga cancer data rna-seq written 1 day ago by Kostas • 0
0
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1
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48
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1
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to much time for using cufflinks
cufflinks rna-seq transcripts written 1 day ago by hasani.iut6 • 10 • updated 1 day ago by Jeffin Rockey • 270
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1
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143
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1
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Multiple samples using cuffdiff
cuffdiff rna-seq pair-wise comparision written 9 weeks ago by tw30282 • 10 • updated 1 day ago by Istvan Albert ♦♦ 71k
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61
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miso installed but no executables available
miso rna-seq written 2 days ago by mioappoggio • 0
3
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1
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141
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1
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Which package is appropriate to the normalised RNA-seq data for differential expression analysis?
R rna-seq written 7 days ago by b.lin • 0 • updated 2 days ago by MMa • 100
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2
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112
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RNA-Seq pipeline for clustering
rna-seq written 2 days ago by lu.ne • 50 • updated 2 days ago by MMa • 100
0
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1
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57
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1
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How can I check for library composition bias RNA-seq data
normalization library composition bias rna-seq written 2 days ago by debitboro • 50 • updated 2 days ago by kennethcondon2007 • 540
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64
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How to find and download the Database from a particular gene in NCBI
transcriptomics rna-seq written 2 days ago by a.mailli • 0
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1
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65
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1
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minimum hardware requirement for denovo RNAseq analysis
rna-seq written 2 days ago by eyonesi • 0 • updated 2 days ago by genomax ♦ 28k
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