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2
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74
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5 follow
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Error in prepDE.py in Tuxedo protocol after StringTie quantification
stringtie deseq2 new tuxedo protocol rna-seq written 6 hours ago by swarajgaikwad15 • 0 • updated 1 hour ago by WouterDeCoster ♦ 34k
9
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2
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90
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6 follow
2
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Get Rs Number Based On Chromosome and Position
vcf rna-seq snp written 21 hours ago by aiteteji • 10 • updated 4 hours ago by Emily_Ensembl ♦ 16k
0
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1
answer
93
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1
answer
differently expressed genes
gene rna-seq written 19 hours ago by maryam.akram001 • 10 • updated 5 hours ago by kristoffer.vittingseerup • 780
3
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1
answer
63
views
1
answer
Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 17 hours ago by ianmw • 20 • updated 5 hours ago by kristoffer.vittingseerup • 780
2
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0
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719
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Diamond annotation versus Kallisto/Sleuth
R rna-seq blast sequencing written 19 months ago by BioBing • 100 • updated 6 hours ago by zx8754 ♦ 5.6k
1
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0
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110
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0
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Advice for indel calling
indel rna-seq written 7 weeks ago by jparker4 • 20 • updated 7 hours ago by Biostar ♦♦ 20
22
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2
answers
771
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21 follow
2
answers
Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
sc-rna rna single cell rna-seq tool written 6 weeks ago by sonpham • 550 • updated 9 hours ago by tan • 10
5
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1
answer
90
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1
answer
Adaptor trimming for RNAseq
rna-seq written 19 hours ago by MAPK • 1.3k
0
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55
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0
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rsem-calculate-expression error SAM/BAM file declares more reference sequences than Rsem
rna-seq written 18 hours ago by sbhattach2 • 0 • updated 15 hours ago by h.mon ♦ 21k
1
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0
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100
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0
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Help interpreting error from DEXSeq
dexseq rna-seq written 10 days ago by squando • 10 • updated 18 hours ago by Lance • 30
0
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0
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31
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0
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ATAC-seq transcription factor binding prediction
transcription factor atac-seq rna-seq written 19 hours ago by Lucy • 0
0
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1
answer
100
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5 follow
1
answer
Ensembl ID conversion - other than Uniprot
ensembl uniprot rna-seq id conversion written 1 day ago by NS • 0 • updated 20 hours ago by Alex Reynolds ♦ 26k
1
vote
1
answer
397
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1
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Job: Cancer Biology Bioinformaticist
next-gen chip-seq job rna-seq sequencing written 5 weeks ago by joshuajmeeks • 10 • updated 23 hours ago by reui879 • 0
1
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1
answer
45
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1
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Problem with plot_bootstrap function in sleuth
R sleuth rna-seq transcriptome written 1 day ago by lalvarez • 10
4
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1
answer
79
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1
answer
Error while loading the data structrure in the ballgown tool
new tuxedo pipeline ballgown rna-seq written 2 days ago by swarajgaikwad15 • 0 • updated 1 day ago by Vijay Lakhujani ♦ 3.2k
0
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0
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41
views
0
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CWL to check the output directory and run for non-existing files
next-gen cwl rna-seq written 1 day ago by a.james • 120
1
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0
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95
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0
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miRNA seq suggested read count and applicability on Illumina iSeq 100
rna-seq written 1 day ago by ivanj • 0
1
vote
1
answer
57
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1
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Need help to do single denovo assembly with multiple RNA seq data
assembly rna-seq written 1 day ago by ashokkumar.mb • 0 • updated 1 day ago by kristoffer.vittingseerup • 780
26
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4
answers
344
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9 follow
4
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Forum: Reasons to refuse to give support
forum design rna-seq statistics written 1 day ago by b.nota ♦ 5.3k • updated 1 day ago by kristoffer.vittingseerup • 780
25
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3
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2.9k
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12 follow
3
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Transform a GTF file into a data frame in R
gtf data frame annotation file rna-seq annotation written 14 months ago by cristian • 180 • updated 1 day ago by Biostar ♦♦ 20
2
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1
answer
46
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1
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Filtering low count when using Tximport from Salmon to DESeq2
deseq2 rna-seq written 1 day ago by bharata1803 • 360 • updated 1 day ago by h.mon ♦ 21k
0
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1
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192
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1
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Issue with DESeq: when using DESeqDataSet object what to put under argument design when there are 3 variables
R deseq2 rna-seq written 8 weeks ago by catglen012 • 0
3
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1
answer
66
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1
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News: scRNA-seq data analysis Workshop in Berlin
news next-gen rna-seq written 1 day ago by carlopecoraro2 • 780 • updated 1 day ago by Eric Normandeau ♦ 10.0k
2
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2
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60
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2
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Where Can I find protein-protein interactions data ?
protein interactions correlation rna-seq written 1 day ago by Biologist • 90 • updated 1 day ago by vkkodali • 350
4
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1
answer
92
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1
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Defining the genomic context given a genomic position
enhancer promoter intro exon rna-seq written 2 days ago by mike • 50 • updated 1 day ago by jared.andrews07 • 1.4k
0
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75
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News: Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals---Bulk and Single Cell Data
bioinformatics single cell rna-seq webinar news rna-seq written 2 days ago by kgosche • 0
1
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0
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54
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Why are file names deleted during submission of RNA-seq data to ENA, after disabling editor mode.
fastq rna-seq ena written 1 day ago by caggtaagtat • 370
1
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1
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61
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1
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Seurat: can someone explain how to identify cell types in clusters
R rna-seq seurat written 2 days ago by Biostars • 0 • updated 1 day ago by paulranum11 • 30
0
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42
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QIIME 1.9, make_phylogeny.py: Tree tips not preserved from fasta input
sequencing alignment rna-seq qiime written 2 days ago by trichter • 0
0
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50
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Annotation from Ensembl plants to DGEs
rna-seq written 2 days ago by catscampos • 0 • updated 2 days ago by Nicolas Rosewick ♦ 6.9k
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