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255
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some questions to do GO enrichment analysis
mouse gene ontology rna-seq written 6 months ago by lkianmehr • 30 • updated 9 minutes ago by Biostar ♦♦ 20
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0
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13
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0
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Differential Gene Expression Analysis From TMM normalized counts
rna-seq written 41 minutes ago by boyinepallyki • 0
0
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1
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38
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1
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Can I compare TPM values for a transcript across different transcriptome assemblies?
gene expression tpm rna-seq transcript written 4 hours ago by molly77 • 10 • updated 2 hours ago by JC ♦ 8.0k
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38
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prepDE.py error - line 255 - gene ID related
stringtie prepde.py error rna-seq geneid written 1 day ago by Rituriya • 20
5
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1
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75
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1
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.slurm vs .sh files
rna-seq written 4 hours ago by Sammy • 10
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1
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65
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1
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DESeq2 nested effect with 5 variables
R deseq2 rna-seq written 6 hours ago by sandeep.amberkar18 • 30 • updated 5 hours ago by leaodel • 80
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119
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Empty VCF files produced by both Mutect2 and HaplotypeCaller?
snp rna-seq haplotype-caller mutect sequencing written 4 weeks ago by gprashant17 • 60 • updated 6 hours ago by Biostar ♦♦ 20
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68
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0
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circos plot for lncRNA distribution across the chromosome
circos plot rna-seq written 13 hours ago by BioBaby • 0
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52
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including batch in design~
deseq2 rna-seq written 16 hours ago by Morris_Chair • 120
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1
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54
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1
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Getting different results from bedtools and samtools
bedtools samtools bamfile rna-seq written 23 hours ago by wstla27 • 0 • updated 22 hours ago by Pierre Lindenbaum ♦ 121k
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30
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IsoformSwitchAnalyzeR - error in creating aSwitchList
isoformswitchanalyzer rna-seq written 23 hours ago by jingjin2203 • 40
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40
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I get different ENSG IDs for the same MSTRG ID
assembly next-gen rna-seq alignment written 1 day ago by morteza.aslanzadeh • 0
4
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1
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72
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1
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How to quantify the RNA-seq reads using Kallisto?
kallisto rna-seq written 1 day ago by F. Golestan • 10 • updated 1 day ago by RamRS ♦ 22k
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48
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overlap (semi global) end alignment for two fasta files
overlap alignment edlib rna-seq semi-global written 1 day ago by madiha_shabbir46 • 0 • updated 1 day ago by genomax ♦ 70k
4
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65
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Is their a way to update HtSeq without uninstalling it?
rna-seq written 1 day ago by rimma.fok • 0
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74
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Correcting batch effect in unevenly distributed groups
R rna-seq batch effect written 4 days ago by jperezboza • 0
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0
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37
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0
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Is BETA suitable for plant research?
beta chip-seq rna-seq written 1 day ago by harrypotterandsbt • 10
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51
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Detection of duplicated regions in RNA-seq data
rna-seq duplication written 1 day ago by Ankit • 110
0
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1
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52
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1
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Are there Fusion gene analysis tools that can be used for cattle?
next-gen rna-seq fusion gene written 1 day ago by Naga_1111 • 0 • updated 1 day ago by benformatics • 950
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42
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How to subset a sleuth object ? (filter on samples)
R sleuth rna-seq written 1 day ago by alexandra.d38 • 0
0
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1
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49
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1
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How to remove cell cycle effct when analysing scRNA-seq data?
cell-cycle rna-seq single cell written 3 days ago by hsu • 10 • updated 1 day ago by kristoffer.vittingseerup • 2.0k
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7 follow
3
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know the grep command for fastq file
rna-seq written 4 days ago by harry • 0 • updated 1 day ago by gsk1185 • 20
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46
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Drug targets for hub genes
R rna-seq written 1 day ago by banerjeeshayantan • 110
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45
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0
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Check for variation between two replicates in transcriptome data
replicates statistical test rna-seq written 1 day ago by sagardesai91 • 50
4
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1
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122
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5 follow
1
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Differential network analysis for two treatments
R rna-seq written 7 days ago by Jon • 90
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33
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Model Matrix Interacting model
next-gen rna-seq edger model/design matrix written 1 day ago by akh22 • 30
0
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1
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57
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1
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Sample Mouse RNA-Seq Dataset
rna-seq written 1 day ago by isu2017 • 0 • updated 1 day ago by EagleEye ♦ 6.4k
3
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1
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151
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1
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How to deal with the abnormal samples from TCGA found in a PCA?
R next-gen rna-seq written 2 days ago by lykosherdshep • 10
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79
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aligning multiple files to the same genome using star
rna-seq written 2 days ago by m.kamal • 0 • updated 2 days ago by genomax ♦ 70k
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53
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0
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Identifying the name of the cluster in DAVID
gene R rna-seq written 2 days ago by babasaraki • 0
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