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How to annotate edgeR results?
R next-gen rna-seq annotation written 7 hours ago by Balatheskulter • 0 • updated 31 minutes ago by h.mon ♦ 29k
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276
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How do I run a .fastq single-end file in rsem-calculate-expression?
rsem-calculate-expression sra ribeiro rna-seq rsem written 7 months ago by matheusribalves • 0 • updated 1 hour ago by svp • 60
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42
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1
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Can I run GSEA on a subset of genes
gsea rna-seq written 3 hours ago by huangweiping.official • 0 • updated 2 hours ago by ATpoint ♦ 31k
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32
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1
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the transcription fasta file of Caenorhabditis elegans
rna-seq written 9 hours ago by yueli7 • 110 • updated 8 hours ago by gayachit • 140
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33
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Multiple DEGs matrices
rna-seq written 11 hours ago by asamie333 • 0
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84
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1
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Box-Plot for selected gene among different samples using ggplot2
R rna-seq written 2 days ago by MikeIT86 • 0 • updated 13 hours ago by Friederike ♦ 5.3k
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80
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5 follow
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How to understand the multi-sample processing of Seurat?
rna-seq scrnaseq seurat written 26 days ago by xiaoguang • 10 • updated 14 hours ago by Friederike ♦ 5.3k
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30
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"No group or design set" with deAna() function in EnrichmentBrowser package
R rna-seq enrichmentbrowser deana() written 14 hours ago by yxswhx • 0
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50
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quality control method for technical problem
rna-seq written 1 day ago by Sara • 90 • updated 1 day ago by ATpoint ♦ 31k
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42
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miRDeep2.0.1.2 run showing RNAfold: invalid option -- n
rna-seq written 1 day ago by ashenafymamo • 0
0
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1
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735
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1
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SCDE Package scde.error.models ERROR
single-cell R rna-seq written 2.7 years ago by shg018 • 10 • updated 1 day ago by Biostar ♦♦ 20
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1
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74
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1
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MUC5AC is not present in deseq2 results
muc5ac deseq2 rna-seq written 1 day ago by nazaninhoseinkhan • 390
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40
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1
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Choosing between edgeR's exactTest and QLFTest for 2x2 design
edger rna-seq written 1 day ago by adam.faranda • 80
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46
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How bedtools genomecov handles reads without both ends mapped in paired sequencing
bedtools paired coverage rna-seq written 1 day ago by rimelof • 0 • updated 1 day ago by ATpoint ♦ 31k
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58
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1
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hisat2 salmon alignment error
rna-seq written 1 day ago by evelyn • 90 • updated 1 day ago by Rob ♦ 3.7k
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102
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Biological Significance of Gene Clusters found from RNASeq Gene Expression data
rna-seq clustering written 3 days ago by donnieDarko • 0
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57
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What is the best way to analyze and enrich a list of DE genes from RNAseq?
R bioinformatics enrichment rna-seq pathways written 2 days ago by miky.zo • 0
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1
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68
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Use padj instead of p-value to ploting DE genes using EnhancedVolcano
rna-seq written 2 days ago by wolideamare • 0 • updated 2 days ago by Kevin Blighe ♦ 56k
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2
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63
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2
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How to set group in EdgeR and DEseq2?
R deseq2 rna-seq edger written 2 days ago by deb0612 • 10 • updated 2 days ago by nilislam3 • 0
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51
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RNA-Seq Time Course Gene Expression dataset
gene-expression rna-seq written 2 days ago by donnieDarko • 0
2
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1
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56
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1
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bedtools bamtofastq: Segmentation fault (core dumped)
bedtools bamtofastq bam rna-seq written 2 days ago by Rashedul Islam • 340 • updated 2 days ago by h.mon ♦ 29k
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673
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16S reads comparing
next-gen rna-seq sequencing written 2.1 years ago by luyang1005 • 20 • updated 2 days ago by Biostar ♦♦ 20
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2.3k
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1
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Up/Down regulated genes list in EdgeR
diffrential gene expression rna-seq edger written 9 months ago by ali.hakimzadeh • 0 • updated 2 days ago by dr.camelia.quek • 0
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49
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1
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Explaining relation of WGS and transcriptome
wgs rna-seq written 2 days ago by A • 3.7k • updated 2 days ago by swbarnes2 ♦ 7.5k
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67
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hisat2 error index out of range
rna-seq written 2 days ago by evelyn • 90
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67
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Is the XS tag required for Stringtie? How do I add the XS tag to all reads in STAR? How do I measure the quality of aligning/merging with Stringtie?
assembly stringtie star rna-seq written 3 days ago by brittany.angarola • 0
2
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126
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5 follow
1
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Problem trying to convert from .gtf to .fasta file
rna-seq bash written 4 weeks ago by nattzy94 • 20 • updated 2 days ago by saadbadday • 0
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41
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single-cell multiomics in genetic disorders
genome chip-seq rna-seq sequencing written 2 days ago by amanqau • 0
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39
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BLAST: how to know the number of contigs assigned to the same accesion number
assembly blast rna-seq written 3 days ago by martinaweil • 0
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Tutorial: scRNA-seq CITE-seq-count bioinformatics
scrna-seq cite-seq-count tutorial rna-seq written 3 days ago by colindaven • 2.1k
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