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protein - lncRNA interactions
rna-seq written 3 hours ago by glady • 260
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24
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RNAseq analysis of interspecies hybrid
assembly alignment rna-seq written 3 hours ago by alicelouiseflint • 0
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Mapping different mouse strains to mm10
hybrid-mouse scrna rna-seq written 7 hours ago by Assa Yeroslaviz • 1.4k
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63
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help clarify ways to measure coverage in RNA-Seq libraries
coverage rna-seq written 12 hours ago by DataFanatic • 240
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43
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1
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problem with fastq dump
fastq dump prefetch rna-seq written 9 hours ago by mo.ghasemi717 • 0
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1
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75
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1
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problem with trimmomatic
gene trimmomatic rna-seq written 2 days ago by mo.ghasemi717 • 0 • updated 14 hours ago by Lesley Sitter • 530
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1
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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
gtf tophat gff rna-seq written 5.1 years ago by manekineko • 130 • updated 14 hours ago by Biostar ♦♦ 20
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Job: Postdoctoral scholar studying tumor genetics and epigenetics at UCSF
next-gen epigenetics job rna-seq written 15 hours ago by David Quigley ♦ 11k
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Differential Gene Expression with Replicates for some of the samples
deseq2 rna-seq edger limma written 1 day ago by rezaeir75 • 10 • updated 17 hours ago by Ali T. A. • 20
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differential gene expression analysis
gene rna-seq written 1 day ago by surabhismo • 0 • updated 1 day ago by Istvan Albert ♦♦ 84k
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Job: Postdoctoral Fellow in Sars-CoV-2 genomics and transcriptomics @ Paul-Ehrlich-Institute, Germany
protein modelling single-cell sequencing rna-seq job written 5 days ago by liam.childs • 0
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How to choose threshold for filtering low counts before Voom transformation?
R rna-seq written 1 day ago by ihc.europa • 20
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91
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Getting wrong with split SRA files to paired end reads
rna-seq written 1 day ago by c910816946 • 0 • updated 1 day ago by geek_y ♦ 11k
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Limma: Coefficients not estimable
R limma rna-seq written 2 days ago by Davide • 10 • updated 1 day ago by h.mon ♦ 30k
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74
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ceRNA network identification
mrna rna-seq mirna written 7 days ago by xinhui.wang • 240 • updated 1 day ago by Biostar ♦♦ 20
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Time series with biological replicates
rna-seq written 1 day ago by Sarah • 0
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How to tackle low reads in RNA-Seq data and compute differential expression
rna-seq rsem star written 4.2 years ago by Dataminer • 2.7k • updated 2 days ago by Biostar ♦♦ 20
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532
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7 follow
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check deseq2 design please
deseq2 rna-seq written 8 months ago by Davide • 10 • updated 2 days ago by RamRS ♦ 28k
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122
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Filter out mouse reads from single cell RNA-seq of PDX tumor
pdx rna-seq written 5 weeks ago by biostarukha • 10 • updated 2 days ago by TC_Chang • 0
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118
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Too many RNAseq samples. What to do?
deseq2 rna-seq edger written 3 days ago by english.server • 210
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72
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1
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Salmon with Sleuth
sleuth salmon rna-seq written 3 days ago by koaeb • 0 • updated 3 days ago by dsull • 1.4k
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132
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predicting some phenotype by gene
limm rna-seq written 13 days ago by Do it! • 10 • updated 3 days ago by Biostar ♦♦ 20
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65
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Import Salmon output by tximport
tximport R salmon rna-seq written 3 days ago by koaeb • 0 • updated 3 days ago by RamRS ♦ 28k
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Create table with 1MB bin size and compute the gene density
rna-seq written 3 days ago by bioinformatics.queries • 0
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1
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65
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1
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Potential Bacteria Contamination - RNA-Seq
metagenomics rna-seq written 3 days ago by VHahaut • 1.1k • updated 3 days ago by genomax ♦ 87k
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RNA Seq Analysis in R
R degs microarray rna-seq written 5 days ago by anasjamshed1994 • 20 • updated 3 days ago by Kevin Blighe ♦ 63k
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59
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How to make box plot for different gene types
R box plot rna-seq written 4 days ago by kousi31 • 10 • updated 4 days ago by Nicolas Rosewick ♦ 8.9k
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61
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Meta Analysis on RNA-seq data
meta analysis rna-seq written 4 days ago by Mozart • 200
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over-representation of sequences that map to "Drosophila melanogaster signal recognition particle
srp representation trap-seq rna-seq fastqc written 4 days ago by DataFanatic • 240
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Voom Unormalised vs Normalised logCPM ?
rna-seq written 4 days ago by sunnykevin97 • 50
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