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rna-seq • reset0
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written 20 hours ago by
jhanks1981 • 0
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lieven.sterck ♦ 4.1k
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written 16 hours ago by
i.sudbery ♦ 4.0k
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lieven.sterck ♦ 4.1k
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Fawzi Yassine • 0
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ATpoint ♦ 14k
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ATpoint ♦ 14k
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written 22 hours ago by
Liftedkris • 0
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21 hours ago by
Kevin Blighe ♦ 39k
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kanwarjag • 930
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written 3 days ago by
wwu222 • 0
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1 day ago by
Kevin Blighe ♦ 39k
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written 2 days ago by
iibrams07 • 0
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2 days ago by
Istvan Albert ♦♦ 79k
Recent Votes
- A: read count normalization
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- A: MACS2 for K27me3 peak calling
- MACS2 for K27me3 peak calling
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Recent Replies
-
C: Downloading public RNA-seq raw read counts by
F • 3.4k
https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/302
-
C: What causes Linear relations on MAplots? by
ATpoint ♦ 14k
https://www.biostars.org/p/309884/
-
C: read count normalization by
Kevin Blighe ♦ 39k
Cool, and, to what does `data` refer? - a directory in your current working directory? Current wo...
-
C: MACS2 for K27me3 peak calling by
msimmer92 • 150
Very good idea to run it in both modes and then merge the results. Two questions: 1) would you re...
-
C: read count normalization by
Liftedkris • 0
> list.files(pattern = ".count") [1] "D1C180_Host_infected_rep1.sorted_name.count" [2] "D1C3...
-
A: read count normalization by
Liftedkris • 0
ok. the output to my screen is the list of all my 28 samples. > list.files(pattern = ".count...
-
C: Error when doing gwas with hail by
Pierre Lindenbaum ♦ 117k
it's the only error message ? there is no stacktrace ?
-
C: removing confounding batch effect with RUVseq by
grant.hovhannisyan • 1.4k
well, no magic here. The package assumes that you know in advance genes that do not change the ex...
-
C: Multiline Fasta To Single Line Fasta by
Pierre Lindenbaum ♦ 117k
https://gist.github.com/lindenb/2c0d4e11fd8a96d4c345
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C: removing confounding batch effect with RUVseq by
b.nota ♦ 6.2k
I don't think there is any tool or method that can do this for you. It is a flaw in your design, ...
-
C: HTSeq error while counting reads by
lieven.sterck ♦ 4.1k
Please provide much more context for this issue. It's kinda hard to investigate this given the cu...
-
A: Using Salmon to quantify immature RNA? by
lieven.sterck ♦ 4.1k
Sounds like an OK plan to me and I don't see any immediate issues with it. The only thing might...
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