rna-seq Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: rna-seq • reset

or Classic search

votes

answers

102

views

5 follow

answers

No differential gene expression after tuxedo protocol

cuffdiff rna-seq written 4 hours ago by vinayjrao • 60 • updated 1 hour ago by Buffo • 470

votes

answers

views

answers

Job: Bioinformatician - Cancer Genomics, Cancer Science Institute of Singapore, NUS, Singapore.

wxs R chip-seq job rna-seq written 3 hours ago by poisonAlien • 2.4k

votes

answers

views

answers

Cuffnorm: which output file should I use

cufflinks next-gen cuffnorm rna-seq written 5 hours ago by ha.hassanzadeh • 0

votes

answers

views

answers

When using eFP Browser what is the cut-off (numeric) value for the low expression level for absolute and relative values?

gene expression arabidopsis thaliana rna-seq written 8 hours ago by BIOAWY • 0

votes

answers

947

views

answers

RNA-seq for ncRNA analysis in Rice

next-gen rna-seq blast sequencing written 2.7 years ago by justinfanyi • 0 • updated 8 hours ago by Biostar ♦♦ 20

votes

answers

1.2k

views

answers

Error: segment-based junction search failed with err =-5

bowtie2 tophat rna-seq written 15 months ago by ihabyounis • 20 • updated 9 hours ago by isaac.c.joseph • 0

votes

answers

views

answers

Explanation of BETA output

beta chip-seq rna-seq data integration written 13 hours ago by benjyrolls • 70

votes

answers

views

answers

News: Course: Variant effect prediction, 31th October - 3th November 2017

news rna-seq written 20 hours ago by si.vanheel-vauhkala • 0 • updated 19 hours ago by WouterDeCoster ♦ 20k

votes

answers

views

answers

how to find position of mi-rna in corresponding EST? i have obtained similarity by blast2go ,i find difficult to find the position of mi-rna in EST?

alignment rna-seq written 19 hours ago by krishnats19992 • 0

votes

answers

366

views

answers

weird insert size post trimming

rna-seq written 4 days ago by badribio • 170 • updated 22 hours ago by ATPoint • 710

Recent Votes

Recent Locations • All »

Serbia And Montenegro, just now
Poland, just now
United Kingdom, just now
Belgium, 1 minute ago

Recent Awards • All »

Teacher to e.rempel • 310
Scholar to Emily_Ensembl ♦ 12k
Teacher to Emily_Ensembl ♦ 12k
Autobiographer to Robert MFellsdig • 0
Scholar to Devon Ryan ♦ 70k
Teacher to Devon Ryan ♦ 70k

Recent Replies

C: No differential gene expression after tuxedo protocol by Radek • 830
If you see the mapping of the reads (with IGV for example) and bedtools is not working you could ...
C: No differential gene expression after tuxedo protocol by vinayjrao • 60
Dear Radek, I have 2 cell line and 2 animal models, both with a cancer and a normal data set. I w...
C: Denisovan and Altai Neanderthal .bed files? by spiral01 • 60
Thank you. As the Neanderthal and Denisovan sequences are mapped to hg19, does this mean I can us...
C: No differential gene expression after tuxedo protocol by vinayjrao • 60
I'm currently trying hisat2 protocol, but haven't finished it yet, so I couldn't use it. And rega...
C: UTR size range for 5' UTR & 3' UTR variants by anupriyaverma1408 • 100
Thanks Emily. That cleared my understanding about UTRs & scripting :)
C: Rename headers of multiple fasta files inside loop by bioinfo8 • 80
@[st.ph.n][1] I explained my query in more detail in above comment. I hope its more clear now. ...
A: Appropriate peak length of ChIP-seq. (Histone modification having different patt by geek_y ♦ 7.8k
Applying `--broad` does not effect calling sharp peaks in MACS2. As you said, its essentially cal...
A: No differential gene expression after tuxedo protocol by Buffo • 470
May be you want to read this: [Transcript-level expression analysis of RNA-seq experiments with H...
C: Is it possible to annotate single genes by snpeff by WouterDeCoster ♦ 20k
Like previous threads: EXPLAIN MORE. Give information about what you are doing (MSA of multiple s...
A: Gene extraction from documents by Emily_Ensembl ♦ 12k
This is what Europe PMC use: https://europepmc.org/Annotations
C: No differential gene expression after tuxedo protocol by Radek • 830
More up to date differential expression pipeline exist (DESeq2, limma-voom, kalisto+sleut, etc). ...
C: No differential gene expression after tuxedo protocol by Satyajeet • 790
I agree with @Devon. However, your samples seem to suffer from another issue here. can you check ...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1374 users visited in the last hour