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RNA-Seq MAplot deviation problem in deseq2

next-gen rna-seq written 11 hours ago by Grace_G • 0

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How does monocle identify the begging of pseudotime?

scrna-seq rna velocity cell trajectory rna-seq written 18 hours ago by popantrop • 20

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How calculate CG content for each contig in an transcript assembly?

cg content assembly contig rna-seq transcriptome written 3 days ago by luzglongoria • 0 • updated 21 hours ago by Vijay Lakhujani ♦ 3.5k

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Recent Replies

C: how to change the sequence ID and order of sequences in a file to match an align by shenwei356 ♦ 4.4k
According what you mentioned in another similar post, the MSA software can save aligment result i...
C: Downloading individual reads from SRA by mnmalash • 0
It worked well with single ends and paired ends. However, in paired ends, it downloads both not e...
C: How to predict individual ethnicity information by using hapmap data by Kevin Blighe ♦ 35k
Sorry - now slow response because I went out. I see.. and the plot result was as you expected wh...
C: Where can I find phage nucleotide sequences with lytic/lysogenic labels? by karl.stamm ♦ 3.4k
You've asked an awful lot of questions.
C: How to generate a short sequence that does not align to the RefSeq? by jrj.healey ♦ 9.8k
Just thinking aloud, but you could screen for low abundance kmers in the Human genome, and then c...
C: how to change the sequence ID and order of sequences in a file to match an align by Kay • 0
Assuming alignment file is also in fasta file, and the sequence ID is not truncated. Is it possib...
C: Use OrthoDB to retrieve the orthologs between human and bacteria by Christophe Dessimoz • 510
https://omabrowser.org/oma/release/
C: Downloading individual reads from SRA by mnmalash • 0
I have already searched the whole sequences for HMMs of interest and those are the positive reads...
C: Need Help with splicing exons on Python by jrj.healey ♦ 9.8k
If this is a homework/assignment task, you need to show some effort first else this thread will b...
C: What is the best way to costract a Crispr library by Ahill • 1.3k
You might need to provide more details about your experimental goal and methods to get useful fee...
C: How to predict individual ethnicity information by using hapmap data by aksoyluinci • 0
Hello Kevin, Thanks for your super fast response. What i meant is that i wanted to add a color ...
A: How to calculate the fraction of bases that are different from the reference bas by M.O.L.S • 0
How to add headers to a dataframe? import pandas as pd print("These are the headers for...

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