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43
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2
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190k
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32 follow
2
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46
votes
3
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94k
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30 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.6 years ago by biorepine1.5k • updated 11 months ago by Renesh1.9k
96
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6
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70k
views
63 follow
6
answers
216
votes
1
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63k
views
222 follow
1
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Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 5.2 years ago by TriS4.2k • updated 10 months ago by jnmcluo0
52
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1
answer
62k
views
42 follow
1
answer
25
votes
2
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57k
views
13 follow
2
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Rpkm Calculation For Genes
rpkm rna-seq written 8.0 years ago by siddharth.sethi5250 • updated 8.0 years ago by JC12k
144
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9
answers
54k
views
75 follow
9
answers
7
votes
3
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52k
views
5 follow
3
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what is the difference between single end and paired end in sequencing
rna-seq written 6.4 years ago by M K510 • updated 3.9 years ago by morteza.mahmoudisaber70
24
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5
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43k
views
12 follow
5
answers
What Databases Are Available For Rna-Seq Datasets?
geo database rna-seq written 8.4 years ago by aprathke140 • updated 8.4 years ago by Khader Shameer18k
35
votes
5
answers
41k
views
15 follow
5
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How to convert to .SRA files to .FQ (FASTQ)
sra fastq sraa rna-seq written 6.2 years ago by Veli Kaan Aydin50 • updated 6.2 years ago by Manvendra Singh2.1k
63
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3
answers
36k
views
17 follow
3
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Why Do You Need To Use Cdna For Rna-Seq?
cdna rna-seq written 8.0 years ago by Justin450 • updated 4.2 years ago by SeqFreak0
30
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4
answers
36k
views
24 follow
4
answers
Best Way To Normalize Rna-Seq Data For Expression Profiling
normalization rna-seq written 6.9 years ago by ajc8120 • updated 5.4 years ago by Amitm2.0k
48
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0
answers
36k
views
35 follow
0
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Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.5 years ago by Sukhdeep Singh10k • updated 4.8 years ago by Shicheng Guo8.4k
25
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2
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36k
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15 follow
2
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Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 8.5 years ago by Sahel260 • updated 4.4 years ago by Biostar ♦♦ 20
32
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5
answers
36k
views
18 follow
5
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FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 5.9 years ago by NHEJ320 • updated 4.5 years ago by Daniel3.8k
29
votes
2
answers
36k
views
21 follow
2
answers
Using transcripts per million (TPM)
deseq2 tpm rna-seq written 5.7 years ago by Tom Harrop160 • updated 4.1 years ago by Biostar ♦♦ 20
48
votes
5
answers
36k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 7.8 years ago by biorepine1.5k • updated 5.4 years ago by Malachi Griffith18k
73
votes
5
answers
36k
views
38 follow
5
answers
Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 8.0 years ago by siddharth.sethi5250 • updated 6.9 years ago by earonesty230
100
votes
17
answers
35k
views
53 follow
17
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Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.4 years ago by KS370 • updated 22 months ago by Shixiang70
17
votes
1
answer
34k
views
1
answer
Keeping pheatmap colour range the same for different data sets
R pheatmap rna-seq written 4.5 years ago by as930940 • updated 4.5 years ago by Selenocysteine600
128
votes
8
answers
33k
views
47 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.5 years ago by lh332k • updated 4.6 years ago by Michael Dondrup47k
269
votes
11
answers
32k
views
192 follow
11
answers
22
votes
1
answer
31k
views
11 follow
1
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What is the difference between GTF AND GFF format
rna-seq written 6.5 years ago by Y Tb200 • updated 6.5 years ago by jason160
17
votes
2
answers
30k
views
12 follow
2
answers
GTF annotation file for Human
next-gen rna-seq written 6.5 years ago by M K510 • updated 6.5 years ago by Dan D7.1k
137
votes
5
answers
29k
views
60 follow
5
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Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 7.0 years ago by sckinta600 • updated 17 months ago by lffu_003260
97
votes
8
answers
29k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 7.8 years ago by Lisa320 • updated 5.6 years ago by n12408010
26
votes
2
answers
29k
views
5 follow
2
answers
Running and Analyzing fastqc on multiple fastq files
genome next-gen rna-seq written 5.5 years ago by ravi.uhdnis180 • updated 5.5 years ago by Madelaine Gogol5.2k
44
votes
4
answers
29k
views
4
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I would like to add gene names to a volcano plot obtained from DEseq2
R deseq2 rna-seq written 4.3 years ago by ta_awwad280 • updated 2.5 years ago by Kevin Blighe66k
20
votes
3
answers
29k
views
5 follow
3
answers
Strand-specific vs. non-strand-specific RNAseq
next-gen strand-specific rna-seq written 6.1 years ago by Y Tb200 • updated 6.1 years ago by Malachi Griffith18k
30
votes
7
answers
29k
views
19 follow
7
answers
Where Can I Download Some Bam Files?
bioinformatics bam rna-seq written 8.5 years ago by snakesgun140 • updated 10 months ago by Roman Valls Guimerà550
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