Showing: rna-seqreset
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39
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2
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159k
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30 follow
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40
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2
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81k
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25 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.4 years ago by biorepine1.4k • updated 23 months ago by Renesh1.6k
96
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6
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68k
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63 follow
6
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25
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2
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55k
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13 follow
2
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Rpkm Calculation For Genes
rpkm rna-seq written 6.8 years ago by siddharth.sethi5230 • updated 6.8 years ago by JC8.2k
190
votes
3
answers
53k
views
192 follow
3
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Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 4.1 years ago by TriS3.9k • updated 4 months ago by my60
131
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9
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51k
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67 follow
9
answers
7
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3
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48k
views
5 follow
3
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what is the difference between single end and paired end in sequencing
rna-seq written 5.2 years ago by M K460 • updated 2.7 years ago by morteza.mahmoudisaber70
24
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5
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40k
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12 follow
5
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What Databases Are Available For Rna-Seq Datasets?
geo database rna-seq written 7.2 years ago by aprathke140 • updated 7.2 years ago by Khader Shameer18k
40
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1
answer
37k
views
32 follow
1
answer
30
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4
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35k
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24 follow
4
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Best Way To Normalize Rna-Seq Data For Expression Profiling
normalization rna-seq written 5.7 years ago by ajc8120 • updated 4.2 years ago by Amitm1.6k
24
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2
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34k
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15 follow
2
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Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 7.3 years ago by Sahel250 • updated 3.2 years ago by Biostar ♦♦ 20
32
votes
5
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34k
views
15 follow
5
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How to convert to .SRA files to .FQ (FASTQ)
sra fastq sraa rna-seq written 5.0 years ago by Veli Kaan Aydin40 • updated 5.0 years ago by Manvendra Singh2.1k
63
votes
3
answers
33k
views
17 follow
3
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Why Do You Need To Use Cdna For Rna-Seq?
cdna rna-seq written 6.9 years ago by Justin440 • updated 3.0 years ago by SeqFreak0
47
votes
5
answers
33k
views
28 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 6.6 years ago by biorepine1.4k • updated 4.2 years ago by Malachi Griffith17k
30
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5
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33k
views
17 follow
5
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FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 4.7 years ago by NHEJ320 • updated 3.3 years ago by Daniel3.7k
24
votes
2
answers
33k
views
17 follow
2
answers
Using transcripts per million (TPM)
deseq2 tpm rna-seq written 4.5 years ago by Tom Harrop150 • updated 2.9 years ago by Biostar ♦♦ 20
46
votes
0
answers
32k
views
31 follow
0
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Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 7.4 years ago by Sukhdeep Singh9.8k • updated 3.6 years ago by Shicheng Guo7.7k
97
votes
17
answers
32k
views
51 follow
17
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Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.2 years ago by KS360 • updated 8 months ago by Shixiang40
68
votes
5
answers
30k
views
32 follow
5
answers
Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 6.8 years ago by siddharth.sethi5230 • updated 5.7 years ago by earonesty220
126
votes
8
answers
30k
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47 follow
8
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Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 7.4 years ago by lh331k • updated 3.4 years ago by Michael Dondrup46k
96
votes
8
answers
28k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 6.6 years ago by Lisa310 • updated 4.5 years ago by n12408010
19
votes
3
answers
27k
views
5 follow
3
answers
Strand-specific vs. non-strand-specific RNAseq
next-gen strand-specific rna-seq written 4.9 years ago by Y Tb170 • updated 4.9 years ago by Malachi Griffith17k
247
votes
11
answers
27k
views
170 follow
11
answers
128
votes
5
answers
26k
views
58 follow
5
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Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 5.8 years ago by sckinta530 • updated 3 months ago by lffu_003240
65
votes
8
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26k
views
26 follow
8
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Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.3 years ago by brentp23k • updated 4.0 years ago by Malachi Griffith17k
19
votes
1
answer
26k
views
9 follow
1
answer
What is the difference between GTF AND GFF format
rna-seq written 5.3 years ago by Y Tb170 • updated 5.3 years ago by jason160
15
votes
2
answers
26k
views
12 follow
2
answers
GTF annotation file for Human
next-gen rna-seq written 5.3 years ago by M K460 • updated 5.3 years ago by Dan D6.8k
18
votes
3
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25k
views
12 follow
3
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Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
rna-seq heatmap written 6.9 years ago by KJ Lim120 • updated 6.9 years ago by Damian Kao15k
24
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6
answers
24k
views
16 follow
6
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Where Can I Download Some Bam Files?
bioinformatics bam rna-seq written 7.3 years ago by snakesgun110 • updated 10 months ago by Roman Valls GuimerĂ 520
23
votes
2
answers
22k
views
2
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Running and Analyzing fastqc on multiple fastq files
genome next-gen rna-seq written 4.3 years ago by ravi.uhdnis170 • updated 4.3 years ago by Madelaine Gogol5.1k
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