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40
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2
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175k
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32 follow
2
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42
votes
3
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89k
views
28 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.0 years ago by biorepine1.4k • updated 4 months ago by Renesh1.8k
96
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6
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69k
views
63 follow
6
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207
votes
1
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59k
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211 follow
1
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Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 4.7 years ago by TriS4.2k • updated 3 months ago by jnmcluo0
25
votes
2
answers
56k
views
13 follow
2
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Rpkm Calculation For Genes
rpkm rna-seq written 7.5 years ago by siddharth.sethi5250 • updated 7.5 years ago by JC9.7k
130
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9
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53k
views
67 follow
9
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49
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1
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52k
views
38 follow
1
answer
7
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3
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50k
views
5 follow
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what is the difference between single end and paired end in sequencing
rna-seq written 5.8 years ago by M K490 • updated 3.3 years ago by morteza.mahmoudisaber70
24
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5
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42k
views
12 follow
5
answers
What Databases Are Available For Rna-Seq Datasets?
geo database rna-seq written 7.9 years ago by aprathke140 • updated 7.9 years ago by Khader Shameer18k
33
votes
5
answers
38k
views
15 follow
5
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How to convert to .SRA files to .FQ (FASTQ)
sra fastq sraa rna-seq written 5.7 years ago by Veli Kaan Aydin40 • updated 5.6 years ago by Manvendra Singh2.1k
30
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4
answers
36k
views
24 follow
4
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Best Way To Normalize Rna-Seq Data For Expression Profiling
normalization rna-seq written 6.3 years ago by ajc8120 • updated 4.8 years ago by Amitm1.9k
25
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2
answers
35k
views
15 follow
2
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Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 7.9 years ago by Sahel250 • updated 3.8 years ago by Biostar ♦♦ 20
63
votes
3
answers
35k
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17 follow
3
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Why Do You Need To Use Cdna For Rna-Seq?
cdna rna-seq written 7.5 years ago by Justin440 • updated 3.6 years ago by SeqFreak0
47
votes
0
answers
35k
views
33 follow
0
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Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.0 years ago by Sukhdeep Singh10k • updated 4.2 years ago by Shicheng Guo8.1k
48
votes
5
answers
34k
views
30 follow
5
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How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 7.2 years ago by biorepine1.4k • updated 4.8 years ago by Malachi Griffith18k
31
votes
5
answers
34k
views
17 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 5.3 years ago by NHEJ320 • updated 3.9 years ago by Daniel3.8k
24
votes
2
answers
34k
views
18 follow
2
answers
Using transcripts per million (TPM)
deseq2 tpm rna-seq written 5.1 years ago by Tom Harrop150 • updated 3.6 years ago by Biostar ♦♦ 20
99
votes
17
answers
34k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.9 years ago by KS370 • updated 15 months ago by Shixiang50
72
votes
5
answers
33k
views
37 follow
5
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Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 7.5 years ago by siddharth.sethi5250 • updated 6.3 years ago by earonesty230
128
votes
8
answers
32k
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47 follow
8
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Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.0 years ago by lh332k • updated 4.0 years ago by Michael Dondrup47k
259
votes
11
answers
30k
views
182 follow
11
answers
22
votes
1
answer
29k
views
11 follow
1
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What is the difference between GTF AND GFF format
rna-seq written 5.9 years ago by Y Tb200 • updated 5.9 years ago by jason160
97
votes
8
answers
28k
views
33 follow
8
answers
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
tophat bwa rna-seq written 7.2 years ago by Lisa310 • updated 5.1 years ago by n12408010
131
votes
5
answers
28k
views
58 follow
5
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Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 6.5 years ago by sckinta550 • updated 10 months ago by lffu_003240
17
votes
1
answer
28k
views
1
answer
Keeping pheatmap colour range the same for different data sets
R pheatmap rna-seq written 3.9 years ago by as930940 • updated 3.9 years ago by Selenocysteine600
17
votes
2
answers
28k
views
12 follow
2
answers
GTF annotation file for Human
next-gen rna-seq written 5.9 years ago by M K490 • updated 5.9 years ago by Dan D7.0k
20
votes
3
answers
28k
views
5 follow
3
answers
Strand-specific vs. non-strand-specific RNAseq
next-gen strand-specific rna-seq written 5.5 years ago by Y Tb200 • updated 5.5 years ago by Malachi Griffith18k
65
votes
8
answers
27k
views
26 follow
8
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Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.9 years ago by brentp23k • updated 4.6 years ago by Malachi Griffith18k
29
votes
7
answers
26k
views
19 follow
7
answers
Where Can I Download Some Bam Files?
bioinformatics bam rna-seq written 7.9 years ago by snakesgun130 • updated 3 months ago by Roman Valls GuimerĂ 530
19
votes
3
answers
26k
views
14 follow
3
answers
Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
rna-seq heatmap written 7.5 years ago by KJ Lim130 • updated 7.5 years ago by Damian Kao15k
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