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46
votes
2
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196k
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34 follow
2
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46
votes
3
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96k
views
30 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.8 years ago by biorepine1.5k • updated 14 months ago by Renesh1.9k
98
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6
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71k
views
67 follow
6
answers
55
votes
1
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66k
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44 follow
1
answer
219
votes
1
answer
65k
views
222 follow
1
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Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 5.5 years ago by TriS4.3k • updated 13 months ago by jnmcluo0
25
votes
2
answers
57k
views
13 follow
2
answers
Rpkm Calculation For Genes
rpkm rna-seq written 8.3 years ago by siddharth.sethi5250 • updated 8.3 years ago by JC12k
146
votes
9
answers
54k
views
77 follow
9
answers
7
votes
3
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53k
views
5 follow
3
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what is the difference between single end and paired end in sequencing
rna-seq written 6.6 years ago by M K510 • updated 4.1 years ago by morteza.mahmoudisaber80
24
votes
5
answers
44k
views
12 follow
5
answers
What Databases Are Available For Rna-Seq Datasets?
geo database rna-seq written 8.7 years ago by aprathke140 • updated 8.6 years ago by Khader Shameer18k
35
votes
5
answers
42k
views
15 follow
5
answers
How to convert to .SRA files to .FQ (FASTQ)
sra fastq sraa rna-seq written 6.5 years ago by Veli Kaan Aydin50 • updated 6.4 years ago by Manvendra Singh2.1k
63
votes
3
answers
37k
views
17 follow
3
answers
Why Do You Need To Use Cdna For Rna-Seq?
cdna rna-seq written 8.3 years ago by Justin450 • updated 4.4 years ago by SeqFreak0
49
votes
0
answers
37k
views
35 follow
0
answers
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 8.8 years ago by Sukhi Singh10k • updated 5.0 years ago by Shicheng Guo8.5k
81
votes
5
answers
37k
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41 follow
5
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Should We Remove Duplicated Reads In Rna-Seq ?
read rna-seq written 8.3 years ago by siddharth.sethi5250 • updated 7.1 years ago by earonesty240
30
votes
4
answers
37k
views
24 follow
4
answers
Best Way To Normalize Rna-Seq Data For Expression Profiling
normalization rna-seq written 7.1 years ago by ajc8120 • updated 5.6 years ago by Amitm2.1k
25
votes
2
answers
37k
views
15 follow
2
answers
Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
differential expression rna-seq written 8.7 years ago by Sahel260 • updated 4.6 years ago by Biostar ♦♦ 20
30
votes
2
answers
36k
views
21 follow
2
answers
Using transcripts per million (TPM)
deseq2 tpm rna-seq written 5.9 years ago by Tom Harrop160 • updated 4.4 years ago by Biostar ♦♦ 20
32
votes
5
answers
36k
views
18 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 6.1 years ago by NHEJ320 • updated 4.7 years ago by Daniel3.8k
48
votes
5
answers
36k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 8.0 years ago by biorepine1.5k • updated 5.6 years ago by Malachi Griffith18k
17
votes
1
answer
36k
views
1
answer
Keeping pheatmap colour range the same for different data sets
R pheatmap rna-seq written 4.7 years ago by as930940 • updated 4.7 years ago by Selenocysteine600
100
votes
17
answers
35k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.7 years ago by KS370 • updated 2.1 years ago by Shixiang70
130
votes
8
answers
34k
views
50 follow
8
answers
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq written 8.8 years ago by lh332k • updated 4.8 years ago by Michael Dondrup48k
272
votes
11
answers
33k
views
196 follow
11
answers
22
votes
1
answer
32k
views
11 follow
1
answer
What is the difference between GTF AND GFF format
rna-seq written 6.7 years ago by Y Tb200 • updated 6.7 years ago by jason160
17
votes
2
answers
30k
views
12 follow
2
answers
GTF annotation file for Human
next-gen rna-seq written 6.7 years ago by M K510 • updated 6.7 years ago by Dan D7.2k
38
votes
2
answers
30k
views
2
answers
Recommended cutoff for FDR - 0.05 or 0.1
R rna-seq written 4.4 years ago by aggregatibacter140 • updated 4.4 years ago by daniel.dvorkin280
49
votes
4
answers
30k
views
4
answers
I would like to add gene names to a volcano plot obtained from DEseq2
R deseq2 rna-seq written 4.5 years ago by ta_awwad300 • updated 2.7 years ago by Kevin Blighe69k
137
votes
5
answers
30k
views
60 follow
5
answers
Why Does Rna-Seq Read Count Fit Poisson Distribution?
modeling rna-seq written 7.3 years ago by sckinta600 • updated 20 months ago by lffu_003260
26
votes
2
answers
30k
views
5 follow
2
answers
Running and Analyzing fastqc on multiple fastq files
genome next-gen rna-seq written 5.7 years ago by ravi.uhdnis180 • updated 5.7 years ago by Madelaine Gogol5.2k
35
votes
2
answers
30k
views
8 follow
2
answers
Calculating TPM from featureCounts output
rna-seq written 5.0 years ago by nash.claire410 • updated 24 months ago by janzrimec0
30
votes
7
answers
30k
views
19 follow
7
answers
Where Can I Download Some Bam Files?
bioinformatics bam rna-seq written 8.7 years ago by snakesgun140 • updated 13 months ago by Roman Valls GuimerĂ 550
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