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Installing and running RNAmmer on Mac ("Unknown platform")

rnammer software error error written 7 months ago by suzuBell • 60 • updated 7 months ago by yztxwd • 380

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449

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Beginner pipeline to compare SSU in sample to tree of SSUs

ssu rnammer phylogeny barrnap written 7 months ago by suzuBell • 60 • updated 7 months ago by Mensur Dlakic • 5.5k

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RNAmmer returns 8s_rRNA, which is what?

rnammer rrna gene prediction gene annotation written 3.0 years ago by Anand Rao • 290 • updated 3.0 years ago by h.mon ♦ 29k

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Recent Replies

C: VCF file phasing by SHAPEIT by miaowzai • 210
Thanks for the update!
C: Error while running vcf2maf tool by zorbax • 130
use the `${variable}` syntax in all your variables to avoid expansion.
C: Retrieve RefSeq protein accession from transcript accession by speycast • 0
Yes as in chromosome/genome. `efetch -db nuccore -id "NM_001382556.2" -format gb` gives the gb ...
A: How to pull pairwise comparison results after running DESeq() with more than two by swbarnes2 ♦ 7.8k
What you wrote should work. Are you sure that you didn't just overwrite the results with the las...
C: Retrieve RefSeq protein accession from transcript accession by genomax ♦ 84k
You should only need: $ efetch -db nuccore -id "NM_001382556.2" -format gb `From reference...
C: How to pull pairwise comparison results after running DESeq() with more than two by ATpoint ♦ 35k
Please read about `Contrasts`in DESeq2: http://bioconductor.org/packages/devel/bioc/vignettes/DES...
C: How to remove characters after specific symbol from all columns, and make all ch by cpad0112 ♦ 13k
Due to this, first column will be removed as there are 6 characters only.
C: Error in Heatmap creation with RnBeads by Assa Yeroslaviz • 1.3k
So let's say I would like to have the heatmaps. what command do I use? Or Can I only do it within...
C: GSVA score and 1-Pearson correlation results do not harmonize by aaragak1 • 0
Histogram of enrichment scores, showing bimodality: ![Histogram of Enrichment Scores][1] Hiera...
C: How to remove characters after specific symbol from all columns, and make all ch by RamRS ♦ 27k
That assumed you'll need to remove exactly 6 characters from each field, which doesn't seem to be...
A: xml file import in omicsbox blast2go and daa files in megan by sgoetz123 • 20
Hi. The XML files you need for importing blast results in OmicsBox to perform functional annotat...
C: Retrieve RefSeq protein accession from transcript accession by speycast • 0
genomax would you happen to know how to retrieve the reference sequence genbank file for this gen...

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