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written 3.9 years ago by
QVINTVS_FABIVS_MAXIMVS • 2.4k
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Researcher • 50
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written 5.4 years ago by
Saulius Lukauskas • 530
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5.4 years ago by
Chris Miller ♦ 21k
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Recent Replies
-
C: DE analysis with limma (What to include in the model?) by
Kevin Blighe ♦ 63k
Thanks, here is your full script: library(edgeR) library(limma) library(Biobase) ...
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A: How to set sleep in GNU parallel in a esearch/efetch script by
ole.tange • 3.8k
Something like this: IDLIST=IDLIST mysearch() { query="$1" IFS=$'\n...
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C: Create a database of RefSeq genes by
RamRS ♦ 28k
smrutimayipanda, you have multiple questions that you have not accepted answers for. Please also ...
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C: DE analysis with limma (What to include in the model?) by
Kevin Blighe ♦ 63k
One has to go through the link, download the script, and then open it on the local drive. That ju...
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C: Using GOplot with data from Gene Ontology Resource by
jkkbuddika • 50
Great! I love gProfiler.
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A: Are there wrappers for blastdb_aliastool, blastdbcmd in Biopython Blast module? by
Istvan Albert ♦♦ 84k
both of these commands are unrelated to the main function of blast, and are quite quirky at what ...
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C: DE analysis with limma (What to include in the model?) by
grayapply2009 • 210
That IS what I did. Please take a look at my data and the single script I provided in this post. ...
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C: DE analysis with limma (What to include in the model?) by
Davide • 10
Why dont you create a single R script that you feed one file, compare the results using the compl...
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C: Reads mapped with zero quality still mapped to exactly one position by
Istvan Albert ♦♦ 84k
that looks like it indeed, the `XA` tag indicates an aligner dependent tag, the bwa manual stat...
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C: Snpcalling with replicates by
eyonesi • 30
thank you for your answer they are biological replicates, do you mean that I create a bam file ...
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C: GAF format from vg by
glenn.hickey • 150
Yes, it is the GAF as defined on that page that vg outputs. Note that it currently writes the ``...
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C: Snpcalling with replicates by
WouterDeCoster ♦ 44k
I'm not sure if this is good advice. If the replicates are from the same individual, combining th...
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