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<prev • 104 results • page 1 of 4 • next >
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 23 days ago by affaid_tyj • 10
6
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1
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2.5k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 2.5 years ago by AB • 90 • updated 6 weeks ago by Biostar ♦♦ 20
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4
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4.5k
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 2.0 years ago by Bnf83 • 100 • updated 12 weeks ago by lhdcsu • 0
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2
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5.0k
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10 follow
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Rpkm (R Code)
rpkm written 4.1 years ago by HNK • 100 • updated 3 months ago by EagleEye • 5.0k
3
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412
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 6 months ago by jmzeng1314 • 80
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232
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RPKM documentation is needed!
rpkm gtex rna-seq written 6 months ago by sima_r1391 • 0
37
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3
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64k
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24 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.1 years ago by biorepine • 1.3k • updated 7 months ago by Renesh • 1.2k
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2
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8.1k
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5 follow
2
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Rpkm Calculation
rpkm written 6.2 years ago by Varun Gupta • 990 • updated 7 months ago by Biostar ♦♦ 20
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2
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1.2k
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2
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 3.6 years ago by Whetting • 1.5k • updated 7 months ago by KVC_bioinfo • 310
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1
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1
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 2.3 years ago by Saad Khan • 310 • updated 9 months ago by Biostar ♦♦ 20
1
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0
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606
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 12 months ago by tud55122 • 10 • updated 11 months ago by Biostar ♦♦ 20
4
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1
answer
610
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7 follow
1
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 11 months ago by jamieson.pierce • 10 • updated 11 months ago by Brian Bushnell ♦ 15k
2
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1
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714
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Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 11 months ago by rbronste • 160 • updated 11 months ago by Devon Ryan ♦ 78k
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1.0k
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GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 12 months ago by kelly.wang135 • 30
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1.2k
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0
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TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 13 months ago by realnewbie • 10
4
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3
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1.6k
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3
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 15 months ago by Tom • 10 • updated 15 months ago by mforde84 • 1.1k
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2
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1.5k
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2
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Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 2.5 years ago by jamie_jabalee • 0 • updated 19 months ago by foobarbaz • 0
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1
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1.7k
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1
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Represent expression values
rpkm rna-seq written 3.8 years ago by int11ap1 • 310 • updated 19 months ago by Biostar ♦♦ 20
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690
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Should I get the mean of 2 log2 transformed RPKM values?
rnaseq rpkm log2 written 19 months ago by YaGalbi • 1.1k
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1
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1.1k
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1
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Outliers detection methods for RNA-Seq data
rpkm outliers rna-seq written 21 months ago by edianfranklin • 0 • updated 19 months ago by Whoknows • 640
14
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3
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15k
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5 follow
3
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TCGA RNA-Seq Data: RSEM and RPKM
rpkm tcga rsem tcga-assembler rna-seq written 3.5 years ago by NetunoPoncã • 160 • updated 19 months ago by Biostar ♦♦ 20
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2
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737
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2
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RPKMs On Transcript Level
rpkm expression transcript gtex eqtl written 19 months ago by scaspar • 0
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2
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8.7k
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6 follow
2
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Convert HTSeq count table to RPKM value using GFF/GTF
htseq rpkm tophat written 3.6 years ago by Whoknows • 640
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2
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92k
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20 follow
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How To Calculate Fpkm (Fragments Per Kilobase Of Exon Per Million Fragments Mapped)
rpkm fpkm rna written 7.1 years ago by User 5402 • 210 • updated 19 months ago by jokipokemon0001 • 0
1
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1
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2.3k
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1
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RNA-seq RPKM significance cut off
rpkm cutoff rna-seq written 19 months ago by YaGalbi • 1.1k • updated 19 months ago by Amitm • 1.4k
3
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0
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574
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feeding RPKM values into DE analysis tools
t-test rpkm de rna-seq written 20 months ago by F • 3.0k
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1
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1.3k
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1
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Filter low expressed genes based on RPKM value
rpkm expression rna-seq written 20 months ago by AP • 20 • updated 20 months ago by fusion.slope • 140
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1
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1.3k
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1
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RNa-seq RPKM data normalization for clustering
rpkm rna-seq normalization written 20 months ago by edianfranklin • 0 • updated 20 months ago by seta • 960
1
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0
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708
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0
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Top 20% expressed orthologus genes in two species
rpkm fpkm rna-seq written 22 months ago by Saad Khan • 310 • updated 20 months ago by Biostar ♦♦ 20
0
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1
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770
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1
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On calculating RPKM values for RNA-seq data
rpkm written 21 months ago by Yongjie Zhang • 80 • updated 21 months ago by dariober ♦ 9.0k
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