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normalization with RPKM
normalization transposon data rna-seq rpkm written 10 days ago by frida • 10 • updated 10 days ago by darbinator • 180
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2
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251
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5 follow
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 12 weeks ago by CrazyB • 210 • updated 12 weeks ago by Charles Warden ♦ 6.9k
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217
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 3 months ago by dle • 0 • updated 3 months ago by Charles Warden ♦ 6.9k
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2
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592
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 5 months ago by Susmita Mandal • 40 • updated 5 months ago by johnsonnathant • 80
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.8 years ago by vinumanikandan • 0 • updated 7 months ago by Biostar ♦♦ 20
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5 follow
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 7 months ago by tpham2654 • 0 • updated 7 months ago by Michael Dondrup ♦ 46k
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339
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 8 months ago by chipolino • 40
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501
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1
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 14 months ago by Yijun Tian • 20 • updated 9 months ago by Kevin Blighe ♦ 44k
2
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1
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286
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1
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 11 months ago by anitaa.bt.2010 • 0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 11 months ago by Vasu • 330
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 12 months ago by brieannsobieski • 0
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332
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 13 months ago by Sharon • 440 • updated 13 months ago by h.mon ♦ 26k
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6 follow
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Help with heatmap
R heatmap expression rpkm written 13 months ago by Pin.Bioinf • 250 • updated 13 months ago by Zhilong Jia • 1.4k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 3.6 years ago by ApoorvaB • 210 • updated 15 months ago by Biostar ♦♦ 20
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4
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 3.2 years ago by Bnf83 • 130 • updated 16 months ago by lhdcsu • 20
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2
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6.7k
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11 follow
2
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Rpkm (R Code)
rpkm written 5.2 years ago by HNK • 120 • updated 17 months ago by EagleEye ♦ 6.4k
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 20 months ago by jmzeng1314 • 90
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556
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RPKM documentation is needed!
rpkm gtex rna-seq written 20 months ago by sima_r1391 • 0
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2
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25 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.2 years ago by biorepine • 1.4k • updated 21 months ago by Renesh • 1.6k
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8.9k
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5 follow
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Rpkm Calculation
rpkm written 7.3 years ago by Varun Gupta • 1.1k • updated 21 months ago by Biostar ♦♦ 20
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1.5k
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 4.7 years ago by Whetting • 1.5k • updated 21 months ago by KVC_bioinfo • 390
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1
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 3.4 years ago by Saad Khan • 330 • updated 23 months ago by Biostar ♦♦ 20
1
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.1 years ago by tud55122 • 20 • updated 2.1 years ago by Biostar ♦♦ 20
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10 follow
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.1 years ago by jamieson.pierce • 30 • updated 2.1 years ago by Brian Bushnell ♦ 16k
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1
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Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 2.1 years ago by rbronste • 240 • updated 2.1 years ago by Devon Ryan ♦ 90k
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GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 2.2 years ago by kelly.wang135 • 30
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TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 2.2 years ago by realnewbie • 10
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3
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3
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 2.4 years ago by Tom • 20 • updated 2.4 years ago by mforde84 • 1.2k
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Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 3.6 years ago by jamie_jabalee • 0 • updated 2.7 years ago by foobarbaz • 0
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1
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Represent expression values
rpkm rna-seq written 4.9 years ago by int11ap1 • 350 • updated 2.7 years ago by Biostar ♦♦ 20
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