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<prev • 121 results • page 1 of 5 • next >
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normalization with RPKM
normalization transposon data rna-seq rpkm written 9 months ago by Chironex • 20 • updated 3 months ago by Biostar ♦♦ 20
3
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1
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183
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1
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RPKM/CPM/FPKM to log2 units
rpkm log2 written 3 months ago by zhang.jianhai • 0 • updated 3 months ago by dsull • 1.0k
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190
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why the TPM value is not same?
R tpm normalizing edger rpkm written 3 months ago by star • 230 • updated 3 months ago by RamRS ♦ 26k
42
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3
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89k
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28 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.0 years ago by biorepine • 1.4k • updated 4 months ago by Renesh • 1.8k
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251
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6 follow
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RPKM with bowtie output
rpkm rna bowtie count written 5 months ago by flogin • 190 • updated 4 months ago by anoo • 0
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Convert RPKM data to read count data matrix
count data rpkm R rna-seq python written 5 months ago by chtrgswm • 10
2
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1
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4.7k
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6 follow
1
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 6.1 years ago by hoangtv • 30 • updated 7 months ago by Biostar ♦♦ 20
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6 follow
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.9 years ago by tud55122 • 20 • updated 7 months ago by Biostar ♦♦ 20
5
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1
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365
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6 follow
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RPKM and TPM calculation
rpkm rna-seq written 8 months ago by friasoler • 20 • updated 8 months ago by kristoffer.vittingseerup • 3.0k
1
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349
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1
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Is calcuNormFactors necessary in the calculation of RPKM?
rpkm rna-seq edger written 9 months ago by wangdp123 • 230 • updated 9 months ago by ATpoint ♦ 32k
10
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2
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609
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5 follow
2
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 12 months ago by CrazyB • 210 • updated 12 months ago by Charles Warden ♦ 7.6k
1
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486
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1
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 13 months ago by dle • 0 • updated 13 months ago by Charles Warden ♦ 7.6k
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2
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1.7k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 14 months ago by Susmita Mandal • 60 • updated 14 months ago by johnsonnathant • 80
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.6 years ago by bassanio • 20 • updated 17 months ago by Biostar ♦♦ 20
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535
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5 follow
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 17 months ago by tpham2654 • 0 • updated 17 months ago by Michael Dondrup ♦ 47k
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649
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 18 months ago by chipolino • 40
3
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1
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791
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1
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 2.0 years ago by Yijun Tian • 20 • updated 19 months ago by Kevin Blighe ♦ 56k
2
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1
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462
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1
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 21 months ago by Annie • 0
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0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 21 months ago by Vasu • 420
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3.3k
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 21 months ago by brieannsobieski • 0
2
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1
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466
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1
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 22 months ago by Sharon • 460 • updated 22 months ago by h.mon ♦ 29k
9
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1
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719
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6 follow
1
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Help with heatmap
R heatmap expression rpkm written 23 months ago by Pin.Bioinf • 270 • updated 23 months ago by Zhilong Jia • 1.5k
6
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1
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3.7k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 4.4 years ago by ApoorvaB • 240 • updated 2.1 years ago by Biostar ♦♦ 20
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4
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 4.0 years ago by Bnf83 • 130 • updated 2.2 years ago by lhdcsu • 20
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2
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7.8k
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12 follow
2
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Rpkm (R Code)
rpkm written 6.0 years ago by HNK • 120 • updated 2.2 years ago by EagleEye ♦ 6.6k
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 2.4 years ago by jmzeng1314 • 90
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RPKM documentation is needed!
rpkm gtex rna-seq written 2.4 years ago by sima_r1391 • 0
4
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2
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9.3k
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5 follow
2
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Rpkm Calculation
rpkm written 8.1 years ago by Varun Gupta • 1.1k • updated 2.5 years ago by Biostar ♦♦ 20
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2
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1.6k
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2
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 5.5 years ago by Whetting • 1.5k • updated 2.6 years ago by KVC_bioinfo • 410
1
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 4.2 years ago by Saad Khan • 390 • updated 2.8 years ago by Biostar ♦♦ 20
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