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<prev • 125 results • page 1 of 5 • next >
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How can I normalize RPKM data from TCGA (pan-cancer analysis)?
rpkm tcga pan-cancer rna-seq normalization written 14 days ago by lenC_biotecLover • 0
2
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2
answers
95
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2
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Extract RPKM values from Diffbind
rpkm diffbind chip-seq written 24 days ago by francesca3 • 20 • updated 23 days ago by Rory Stark • 720
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0
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112
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0
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RPKM for multi-copy genes
rpkm multi-copy genes written 28 days ago by poltora4enko • 10
2
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0
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3.0k
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0
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Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.4 years ago by Nathan S. Watson-Haigh • 200 • updated 4 weeks ago by Biostar ♦♦ 20
6
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2
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180
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5 follow
2
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Comparison different Datasets without having the FASTQ
correction R bulkrnaseq rpkm batch written 7 weeks ago by camillab. • 10 • updated 7 weeks ago by ATpoint ♦ 36k
0
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1
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391
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normalization with RPKM
normalization transposon data rna-seq rpkm written 14 months ago by Chironex • 20 • updated 7 months ago by Biostar ♦♦ 20
3
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1
answer
319
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1
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RPKM/CPM/FPKM to log2 units
rpkm log2 written 7 months ago by zhang.jianhai • 0 • updated 7 months ago by dsull • 1.4k
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282
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why the TPM value is not same?
R tpm normalizing edger rpkm written 7 months ago by star • 240 • updated 7 months ago by RamRS ♦ 28k
46
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3
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93k
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30 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.3 years ago by biorepine • 1.5k • updated 8 months ago by Renesh • 1.9k
6
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1
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382
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6 follow
1
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RPKM with bowtie output
rpkm rna bowtie count written 9 months ago by flogin • 250 • updated 8 months ago by anoo • 0
2
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0
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450
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0
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Convert RPKM data to read count data matrix
count data rpkm R rna-seq python written 9 months ago by chtrgswm • 10
2
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1
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4.8k
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6 follow
1
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 6.5 years ago by hoangtv • 30 • updated 11 months ago by Biostar ♦♦ 20
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6 follow
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 3.3 years ago by tud55122 • 20 • updated 11 months ago by Biostar ♦♦ 20
5
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1
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550
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6 follow
1
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RPKM and TPM calculation
rpkm rna-seq written 12 months ago by friasoler • 20 • updated 12 months ago by kristoffer.vittingseerup • 3.4k
1
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1
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477
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1
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Is calcuNormFactors necessary in the calculation of RPKM?
rpkm rna-seq edger written 13 months ago by wangdp123 • 240 • updated 13 months ago by ATpoint ♦ 36k
10
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2
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797
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5 follow
2
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 16 months ago by CrazyB • 210 • updated 16 months ago by Charles Warden ♦ 7.8k
1
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1
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628
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1
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 17 months ago by dle • 0 • updated 17 months ago by Charles Warden ♦ 7.8k
6
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2
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2.3k
views
9 follow
2
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 18 months ago by Susmita Mandal • 60 • updated 18 months ago by johnsonnathant • 80
0
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1
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3.1k
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.9 years ago by bassanio • 20 • updated 21 months ago by Biostar ♦♦ 20
6
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0
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642
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5 follow
0
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 21 months ago by tpham2654 • 0 • updated 21 months ago by Michael Dondrup ♦ 47k
0
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0
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761
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0
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 22 months ago by chipolino • 40
3
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1
answer
898
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1
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 2.3 years ago by Yijun Tian • 20 • updated 23 months ago by Kevin Blighe ♦ 63k
2
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1
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528
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1
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 2.1 years ago by Annie • 0
1
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0
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1.9k
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5 follow
0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 2.1 years ago by Vasu • 450
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2
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4.2k
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2
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 2.1 years ago by brieannsobieski • 0
2
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1
answer
520
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1
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 2.2 years ago by Sharon • 480 • updated 2.2 years ago by h.mon ♦ 30k
9
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1
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809
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6 follow
1
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Help with heatmap
R heatmap expression rpkm written 2.2 years ago by Pin.Bioinf • 270 • updated 2.2 years ago by Zhilong Jia • 1.6k
6
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1
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4.0k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 4.8 years ago by Apoorva • 250 • updated 2.4 years ago by Biostar ♦♦ 20
13
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4
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12k
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 4.3 years ago by Bnf83 • 150 • updated 2.5 years ago by lhdcsu • 30
10
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2
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8.3k
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12 follow
2
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Rpkm (R Code)
rpkm written 6.4 years ago by HNK • 130 • updated 2.6 years ago by EagleEye ♦ 6.6k
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