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0
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normalization with RPKM
normalization transposon data rna-seq rpkm written 7 months ago by Chironex • 20 • updated 23 days ago by Biostar ♦♦ 20
3
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1
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115
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1
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RPKM/CPM/FPKM to log2 units
rpkm log2 written 24 days ago by zhang.jianhai • 0 • updated 24 days ago by dsull • 830
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140
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why the TPM value is not same?
R tpm normalizing edger rpkm written 6 weeks ago by star • 200 • updated 6 weeks ago by RamRS ♦ 25k
41
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3
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86k
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28 follow
3
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.8 years ago by biorepine • 1.4k • updated 8 weeks ago by Renesh • 1.8k
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1
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204
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6 follow
1
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RPKM with bowtie output
rpkm rna bowtie count written 12 weeks ago by flogin • 150 • updated 9 weeks ago by anoo • 0
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Convert RPKM data to read count data matrix
count data rpkm R rna-seq python written 11 weeks ago by chtrgswm • 10
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1
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4.6k
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6 follow
1
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 5.9 years ago by hoangtv • 30 • updated 5 months ago by Biostar ♦♦ 20
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1.6k
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6 follow
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.7 years ago by tud55122 • 20 • updated 5 months ago by Biostar ♦♦ 20
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1
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310
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6 follow
1
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RPKM and TPM calculation
rpkm rna-seq written 5 months ago by friasoler • 20 • updated 5 months ago by kristoffer.vittingseerup • 3.0k
1
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1
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287
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1
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Is calcuNormFactors necessary in the calculation of RPKM?
rpkm rna-seq edger written 6 months ago by wangdp123 • 200 • updated 6 months ago by ATpoint ♦ 28k
10
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2
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529
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5 follow
2
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 10 months ago by CrazyB • 210 • updated 10 months ago by Charles Warden ♦ 7.5k
1
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1
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415
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1
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 11 months ago by dle • 0 • updated 11 months ago by Charles Warden ♦ 7.5k
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2
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1.4k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 12 months ago by Susmita Mandal • 60 • updated 12 months ago by johnsonnathant • 80
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3.0k
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1
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.4 years ago by bassanio • 20 • updated 14 months ago by Biostar ♦♦ 20
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482
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5 follow
0
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 14 months ago by tpham2654 • 0 • updated 14 months ago by Michael Dondrup ♦ 47k
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 15 months ago by chipolino • 40
3
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1
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726
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1
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 21 months ago by Yijun Tian • 20 • updated 16 months ago by Kevin Blighe ♦ 53k
2
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1
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432
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1
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 18 months ago by Annie • 0
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1.3k
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0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 18 months ago by Vasu • 420
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2.9k
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 19 months ago by brieannsobieski • 0
2
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1
answer
443
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1
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 20 months ago by Sharon • 460 • updated 20 months ago by h.mon ♦ 29k
9
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1
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686
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6 follow
1
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Help with heatmap
R heatmap expression rpkm written 20 months ago by Pin.Bioinf • 270 • updated 20 months ago by Zhilong Jia • 1.5k
6
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1
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3.6k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 4.2 years ago by ApoorvaB • 230 • updated 22 months ago by Biostar ♦♦ 20
10
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4
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10k
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 3.8 years ago by Bnf83 • 130 • updated 24 months ago by lhdcsu • 20
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2
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7.5k
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12 follow
2
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Rpkm (R Code)
rpkm written 5.8 years ago by HNK • 120 • updated 2.0 years ago by EagleEye ♦ 6.5k
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1.7k
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5 follow
0
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 2.2 years ago by jmzeng1314 • 90
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720
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RPKM documentation is needed!
rpkm gtex rna-seq written 2.2 years ago by sima_r1391 • 0
4
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2
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9.2k
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5 follow
2
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Rpkm Calculation
rpkm written 7.9 years ago by Varun Gupta • 1.1k • updated 2.3 years ago by Biostar ♦♦ 20
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2
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1.6k
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2
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 5.3 years ago by Whetting • 1.5k • updated 2.4 years ago by KVC_bioinfo • 410
1
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1
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 4.0 years ago by Saad Khan • 380 • updated 2.6 years ago by Biostar ♦♦ 20
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