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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 15 days ago by g.e.novakovsky • 20
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1
answer
285
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1
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 6 months ago by affaid_tyj • 20 • updated 5 weeks ago by Kevin Blighe ♦ 30k
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1
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140
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1
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 3 months ago by anitaa.bt.2010 • 0
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254
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 3 months ago by Bioinfo • 270
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2
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331
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 3 months ago by brieannsobieski • 0
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1
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176
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1
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 5 months ago by Sharon • 340 • updated 5 months ago by h.mon ♦ 20k
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1
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328
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6 follow
1
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Help with heatmap
R heatmap expression rpkm written 5 months ago by Pin.Bioinf • 170 • updated 5 months ago by Zhilong Jia • 1.4k
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1
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2.8k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 3.0 years ago by ApoorvaB • 140 • updated 7 months ago by Biostar ♦♦ 20
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4
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6.0k
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4
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 2.5 years ago by Bnf83 • 110 • updated 8 months ago by lhdcsu • 10
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2
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5.7k
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11 follow
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Rpkm (R Code)
rpkm written 4.6 years ago by HNK • 110 • updated 9 months ago by EagleEye ♦ 5.7k
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786
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 11 months ago by jmzeng1314 • 90
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338
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RPKM documentation is needed!
rpkm gtex rna-seq written 11 months ago by sima_r1391 • 0
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2
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70k
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25 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.5 years ago by biorepine • 1.4k • updated 13 months ago by Renesh • 1.3k
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8.4k
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5 follow
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Rpkm Calculation
rpkm written 6.6 years ago by Varun Gupta • 1.0k • updated 13 months ago by Biostar ♦♦ 20
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2
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1.3k
views
2
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 4.0 years ago by Whetting • 1.5k • updated 13 months ago by KVC_bioinfo • 350
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1
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 2.8 years ago by Saad Khan • 310 • updated 15 months ago by Biostar ♦♦ 20
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 17 months ago by tud55122 • 20 • updated 16 months ago by Biostar ♦♦ 20
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1
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932
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10 follow
1
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 17 months ago by jamieson.pierce • 30 • updated 17 months ago by Brian Bushnell ♦ 16k
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1
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1.1k
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Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 17 months ago by rbronste • 170 • updated 17 months ago by Devon Ryan ♦ 85k
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1.6k
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GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 18 months ago by kelly.wang135 • 30
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1.8k
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TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 18 months ago by realnewbie • 10
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3
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2.6k
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3
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 21 months ago by Tom • 20 • updated 21 months ago by mforde84 • 1.2k
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2
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1.7k
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Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 3.0 years ago by jamie_jabalee • 0 • updated 2.1 years ago by foobarbaz • 0
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1
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1.9k
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1
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Represent expression values
rpkm rna-seq written 4.3 years ago by int11ap1 • 310 • updated 2.1 years ago by Biostar ♦♦ 20
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930
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Should I get the mean of 2 log2 transformed RPKM values?
rnaseq rpkm log2 written 2.1 years ago by YaGalbi • 1.3k
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1
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1.3k
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1
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Outliers detection methods for RNA-Seq data
rpkm outliers rna-seq written 2.2 years ago by edianfranklin • 0 • updated 2.1 years ago by Whoknows • 660
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16k
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5 follow
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TCGA RNA-Seq Data: RSEM and RPKM
rpkm tcga rsem tcga-assembler rna-seq written 4.0 years ago by NetunoPoncã • 160 • updated 2.1 years ago by Biostar ♦♦ 20
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2
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860
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RPKMs On Transcript Level
rpkm expression transcript gtex eqtl written 2.1 years ago by scaspar • 0
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2
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9.6k
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6 follow
2
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Convert HTSeq count table to RPKM value using GFF/GTF
htseq rpkm tophat written 4.1 years ago by Whoknows • 660
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2
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95k
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20 follow
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How To Calculate Fpkm (Fragments Per Kilobase Of Exon Per Million Fragments Mapped)
rpkm fpkm rna written 7.6 years ago by User 5402 • 210 • updated 2.1 years ago by jokipokemon0001 • 0
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