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<prev • 117 results • page 1 of 4 • next >
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 5.7 years ago by hoangtv • 30 • updated 9 weeks ago by Biostar ♦♦ 20
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.5 years ago by tud55122 • 20 • updated 10 weeks ago by Biostar ♦♦ 20
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212
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6 follow
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RPKM and TPM calculation
rpkm rna-seq written 11 weeks ago by friasoler • 20 • updated 11 weeks ago by kristoffer.vittingseerup • 2.4k
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1
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212
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1
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Is calcuNormFactors necessary in the calculation of RPKM?
rpkm rna-seq edger written 3 months ago by wangdp123 • 180 • updated 3 months ago by ATpoint ♦ 24k
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219
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normalization with RPKM
normalization transposon data rna-seq rpkm written 4 months ago by Chironex • 20 • updated 4 months ago by darbinator • 190
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5 follow
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 7 months ago by CrazyB • 210 • updated 7 months ago by Charles Warden ♦ 7.3k
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 7 months ago by dle • 0 • updated 7 months ago by Charles Warden ♦ 7.3k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 9 months ago by Susmita Mandal • 50 • updated 9 months ago by johnsonnathant • 80
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.1 years ago by bassanio • 10 • updated 11 months ago by Biostar ♦♦ 20
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5 follow
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 11 months ago by tpham2654 • 0 • updated 11 months ago by Michael Dondrup ♦ 46k
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475
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 12 months ago by chipolino • 40
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630
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 18 months ago by Yijun Tian • 20 • updated 13 months ago by Kevin Blighe ♦ 50k
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resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 15 months ago by Annie • 0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 15 months ago by Vasu • 410
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 16 months ago by brieannsobieski • 0
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 17 months ago by Sharon • 440 • updated 17 months ago by h.mon ♦ 27k
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6 follow
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Help with heatmap
R heatmap expression rpkm written 17 months ago by Pin.Bioinf • 260 • updated 17 months ago by Zhilong Jia • 1.5k
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3.4k
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1
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 4.0 years ago by ApoorvaB • 230 • updated 19 months ago by Biostar ♦♦ 20
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 3.5 years ago by Bnf83 • 130 • updated 20 months ago by lhdcsu • 20
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7.1k
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11 follow
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Rpkm (R Code)
rpkm written 5.6 years ago by HNK • 120 • updated 21 months ago by EagleEye ♦ 6.5k
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 24 months ago by jmzeng1314 • 90
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653
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RPKM documentation is needed!
rpkm gtex rna-seq written 24 months ago by sima_r1391 • 0
40
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2
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83k
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25 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.6 years ago by biorepine • 1.4k • updated 2.1 years ago by Renesh • 1.6k
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Rpkm Calculation
rpkm written 7.7 years ago by Varun Gupta • 1.1k • updated 2.1 years ago by Biostar ♦♦ 20
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 5.1 years ago by Whetting • 1.5k • updated 2.1 years ago by KVC_bioinfo • 410
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Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 3.8 years ago by Saad Khan • 370 • updated 2.3 years ago by Biostar ♦♦ 20
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10 follow
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.4 years ago by jamieson.pierce • 30 • updated 2.4 years ago by Brian Bushnell ♦ 16k
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Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 2.4 years ago by rbronste • 280 • updated 2.4 years ago by Devon Ryan ♦ 92k
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GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 2.5 years ago by kelly.wang135 • 50
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TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 2.6 years ago by realnewbie • 10
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