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6
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2
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182
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 4 weeks ago by Susmita Mandal • 20 • updated 4 weeks ago by johnsonnathant • 70
0
votes
1
answer
2.7k
views
1
answer
Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.5 years ago by vinumanikandan • 0 • updated 3 months ago by Biostar ♦♦ 20
6
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0
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238
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5 follow
0
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 3 months ago by tpham2654 • 0 • updated 3 months ago by Michael Dondrup ♦ 45k
0
votes
0
answers
205
views
0
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 4 months ago by g.e.novakovsky • 20
3
votes
1
answer
400
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1
answer
To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 10 months ago by Yijun Tian • 20 • updated 5 months ago by Kevin Blighe ♦ 37k
2
votes
1
answer
214
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1
answer
resequencing RNAseq single end reads (Source: Bacteria)
resequencing cufflinks mtb rna-seq rpkm written 7 months ago by anitaa.bt.2010 • 0
0
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0
answers
474
views
0
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How to make a scatter plot showing correlation between genes?
gene rpkm scatterplot rna-seq R written 7 months ago by Vasu • 300
2
votes
2
answers
982
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2
answers
RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 8 months ago by brieannsobieski • 0
2
votes
1
answer
251
views
1
answer
Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 9 months ago by Sharon • 410 • updated 9 months ago by h.mon ♦ 23k
9
votes
1
answer
460
views
6 follow
1
answer
Help with heatmap
R heatmap expression rpkm written 9 months ago by Pin.Bioinf • 230 • updated 9 months ago by Zhilong Jia • 1.4k
6
votes
1
answer
3.0k
views
1
answer
Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 3.3 years ago by ApoorvaB • 160 • updated 11 months ago by Biostar ♦♦ 20
8
votes
4
answers
7.1k
views
4
answers
How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 2.9 years ago by Bnf83 • 130 • updated 12 months ago by lhdcsu • 10
9
votes
2
answers
6.2k
views
11 follow
2
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Rpkm (R Code)
rpkm written 4.9 years ago by HNK • 120 • updated 13 months ago by EagleEye ♦ 6.2k
4
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0
answers
1.0k
views
5 follow
0
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 15 months ago by jmzeng1314 • 90
0
votes
0
answers
448
views
0
answers
RPKM documentation is needed!
rpkm gtex rna-seq written 16 months ago by sima_r1391 • 0
39
votes
2
answers
74k
views
25 follow
2
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.9 years ago by biorepine • 1.4k • updated 17 months ago by Renesh • 1.5k
4
votes
2
answers
8.6k
views
5 follow
2
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Rpkm Calculation
rpkm written 7.0 years ago by Varun Gupta • 1.1k • updated 17 months ago by Biostar ♦♦ 20
0
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2
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1.4k
views
2
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 4.4 years ago by Whetting • 1.5k • updated 17 months ago by KVC_bioinfo • 350
1
vote
1
answer
1.3k
views
1
answer
Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 3.1 years ago by Saad Khan • 310 • updated 19 months ago by Biostar ♦♦ 20
1
vote
0
answers
1.1k
views
0
answers
Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 22 months ago by tud55122 • 20 • updated 20 months ago by Biostar ♦♦ 20
9
votes
1
answer
1.1k
views
10 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 21 months ago by jamieson.pierce • 30 • updated 21 months ago by Brian Bushnell ♦ 16k
2
votes
1
answer
1.3k
views
1
answer
Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 21 months ago by rbronste • 230 • updated 21 months ago by Devon Ryan ♦ 88k
0
votes
0
answers
1.9k
views
0
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GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 22 months ago by kelly.wang135 • 30
1
vote
0
answers
2.1k
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0
answers
TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 22 months ago by realnewbie • 10
4
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3
answers
3.4k
views
3
answers
Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 2.1 years ago by Tom • 20 • updated 2.1 years ago by mforde84 • 1.2k
0
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2
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1.8k
views
2
answers
Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 3.3 years ago by jamie_jabalee • 0 • updated 2.4 years ago by foobarbaz • 0
0
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1
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2.1k
views
1
answer
Represent expression values
rpkm rna-seq written 4.6 years ago by int11ap1 • 310 • updated 2.4 years ago by Biostar ♦♦ 20
0
votes
0
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1.1k
views
0
answers
Should I get the mean of 2 log2 transformed RPKM values?
rnaseq rpkm log2 written 2.4 years ago by YaGalbi • 1.4k
2
votes
1
answer
1.5k
views
1
answer
Outliers detection methods for RNA-Seq data
rpkm outliers rna-seq written 2.6 years ago by edianfranklin • 0 • updated 2.4 years ago by Whoknows • 670
14
votes
3
answers
17k
views
5 follow
3
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TCGA RNA-Seq Data: RSEM and RPKM
rpkm tcga rsem tcga-assembler rna-seq written 4.3 years ago by NetunoPoncã • 160 • updated 2.4 years ago by Biostar ♦♦ 20
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