Showing: rpkmreset
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normalization with RPKM
normalization transposon data rna-seq rpkm written 10 days ago by frida10 • updated 10 days ago by darbinator180
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5 follow
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Are all RPKM/FPKMs in RNAseq "equal" ?
rpkm rna-seq written 12 weeks ago by CrazyB210 • updated 12 weeks ago by Charles Warden6.9k
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public RNAseq data : compare gene expression using RPKM
rpkm tutorial rna-seq anova written 3 months ago by dle0 • updated 3 months ago by Charles Warden6.9k
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9 follow
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What is RPKM/FPKM > 1 or 3 or 5?
rpkm fpkm ngs rna-seq normalization written 5 months ago by Susmita Mandal40 • updated 5 months ago by johnsonnathant80
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.8 years ago by vinumanikandan0 • updated 7 months ago by Biostar ♦♦ 20
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5 follow
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Add RPKM values together for multiple different genes?
rpkm rna-seq gsea written 7 months ago by tpham26540 • updated 7 months ago by Michael Dondrup46k
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To make difference or Ratio, it's a problem
rpkm rna-seq probeset written 14 months ago by Yijun Tian20 • updated 9 months ago by Kevin Blighe44k
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 13 months ago by Sharon440 • updated 13 months ago by h.mon26k
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6 follow
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Help with heatmap
R heatmap expression rpkm written 13 months ago by Pin.Bioinf250 • updated 13 months ago by Zhilong Jia1.4k
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 3.6 years ago by ApoorvaB210 • updated 15 months ago by Biostar ♦♦ 20
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How to define the gene length for RPKM calculation
rpkm expression rna-seq .gtf written 3.2 years ago by Bnf83130 • updated 16 months ago by lhdcsu20
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11 follow
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Rpkm (R Code)
rpkm written 5.2 years ago by HNK120 • updated 17 months ago by EagleEye6.4k
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5 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 20 months ago by jmzeng131490
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RPKM documentation is needed!
rpkm gtex rna-seq written 20 months ago by sima_r13910
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25 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.2 years ago by biorepine1.4k • updated 21 months ago by Renesh1.6k
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5 follow
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Rpkm Calculation
rpkm written 7.3 years ago by Varun Gupta1.1k • updated 21 months ago by Biostar ♦♦ 20
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 4.7 years ago by Whetting1.5k • updated 21 months ago by KVC_bioinfo390
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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.1 years ago by tud5512220 • updated 2.1 years ago by Biostar ♦♦ 20
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Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.1 years ago by jamieson.pierce30 • updated 2.1 years ago by Brian Bushnell16k
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Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 2.1 years ago by rbronste240 • updated 2.1 years ago by Devon Ryan90k
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 2.4 years ago by Tom20 • updated 2.4 years ago by mforde841.2k
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Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 3.6 years ago by jamie_jabalee0 • updated 2.7 years ago by foobarbaz0
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Represent expression values
rpkm rna-seq written 4.9 years ago by int11ap1350 • updated 2.7 years ago by Biostar ♦♦ 20
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