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<prev • 101 results • page 1 of 4 • next >
35
votes
3
answers
55k
views
22 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 4.5 years ago by biorepine • 1.2k • updated 8 days ago by Renesh • 910
4
votes
2
answers
7.7k
views
5 follow
2
answers
Rpkm Calculation
rpkm written 5.6 years ago by Varun Gupta • 880 • updated 9 days ago by Biostar ♦♦ 20
0
votes
2
answers
1.0k
views
2
answers
differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 3.0 years ago by Whetting • 1.5k • updated 13 days ago by Jessica_bioinfo • 10
1
vote
1
answer
816
views
1
answer
Normalization scheme to use for upstream sequences read count in (Chip-seq histones)
rpkm histones normalization written 20 months ago by Saad Khan • 310 • updated 12 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
340
views
0
answers
Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 5 months ago by tud55122 • 10 • updated 3 months ago by Biostar ♦♦ 20
4
votes
1
answer
290
views
7 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 4 months ago by jamieson.pierce • 10 • updated 4 months ago by Brian Bushnell ♦ 14k
2
votes
1
answer
308
views
1
answer
Calculating FPKM values from HT-counts
rpkm fpkm rna-seq written 4 months ago by rbronste • 140 • updated 4 months ago by Devon Ryan ♦ 71k
0
votes
0
answers
372
views
0
answers
GTEx RNA sequencing data in RPKM
rpkm gtex rna-seq normalization written 5 months ago by kelly.wang135 • 20
0
votes
0
answers
595
views
0
answers
TCGA data(RPKM) differential gene expression
R tcga ipa rna-seq rpkm written 5 months ago by realnewbie • 0
4
votes
3
answers
710
views
3
answers
Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 8 months ago by Tom • 10 • updated 8 months ago by mforde84 • 900
0
votes
2
answers
1.2k
views
2
answers
Comparing normal vs tumor using RPKM data from Wanderer/TCGA
rpkm tcga rna-seq written 23 months ago by jamie_jabalee • 0 • updated 12 months ago by foobarbaz • 0
0
votes
1
answer
1.5k
views
1
answer
Represent expression values
rpkm rna-seq written 3.2 years ago by int11ap1 • 300 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
422
views
0
answers
Should I get the mean of 2 log2 transformed RPKM values?
rnaseq rpkm log2 written 12 months ago by kennethcondon2007 • 820
2
votes
1
answer
735
views
1
answer
Outliers detection methods for RNA-Seq data
rpkm outliers rna-seq written 14 months ago by edianfranklin • 0 • updated 12 months ago by Whoknows • 590
13
votes
3
answers
13k
views
3
answers
TCGA RNA-Seq Data: RSEM and RPKM
rpkm tcga rsem tcga-assembler rna-seq written 2.9 years ago by NetunoPoncã • 160 • updated 12 months ago by Biostar ♦♦ 20
1
vote
2
answers
533
views
2
answers
RPKMs On Transcript Level
rpkm expression transcript gtex eqtl written 12 months ago by scaspar • 0
2
votes
2
answers
7.1k
views
2
answers
Convert HTSeq count table to RPKM value using GFF/GTF
htseq rpkm tophat written 3.0 years ago by Whoknows • 590
28
votes
2
answers
89k
views
20 follow
2
answers
How To Calculate Fpkm (Fragments Per Kilobase Of Exon Per Million Fragments Mapped)
rpkm fpkm rna written 6.5 years ago by User 5402 • 210 • updated 12 months ago by jokipokemon0001 • 0
1
vote
1
answer
1.4k
views
1
answer
RNA-seq RPKM significance cut off
rpkm cutoff rna-seq written 12 months ago by kennethcondon2007 • 820 • updated 12 months ago by Amitm • 1.3k
3
votes
0
answers
403
views
0
answers
feeding RPKM values into DE analysis tools
t-test rpkm de rna-seq written 13 months ago by Fereshteh • 2.7k
1
vote
1
answer
820
views
1
answer
Filter low expressed genes based on RPKM value
rpkm expression rna-seq written 13 months ago by AP • 20 • updated 13 months ago by fusion.slope • 120
0
votes
1
answer
847
views
1
answer
RNa-seq RPKM data normalization for clustering
rpkm rna-seq normalization written 13 months ago by edianfranklin • 0 • updated 13 months ago by seta • 920
1
vote
0
answers
481
views
0
answers
Top 20% expressed orthologus genes in two species
rpkm fpkm rna-seq written 15 months ago by Saad Khan • 310 • updated 13 months ago by Biostar ♦♦ 20
0
votes
1
answer
493
views
1
answer
On calculating RPKM values for RNA-seq data
rpkm written 14 months ago by Yongjie Zhang • 80 • updated 14 months ago by dariober • 8.0k
2
votes
0
answers
441
views
0
answers
TCGA exons data-de novo isoform assembly
rpkm tcga rna-seq transcript written 14 months ago by juara • 0
0
votes
1
answer
517
views
1
answer
Gene length table from gtf file for rpkm() function
rpkm htseq count edger gene length written 14 months ago by debitboro • 70 • updated 14 months ago by EagleEye • 4.7k
1
vote
0
answers
464
views
0
answers
Comparing features of high expression genes vs low expression genes in two species
rpkm gene expression rna-seq written 15 months ago by Saad Khan • 310
4
votes
1
answer
816
views
1
answer
RPKM and differential expression analysis
rpkm bioc rna-seq differential expression R written 15 months ago by harrietjamieson86 • 20
21
votes
5
answers
3.3k
views
16 follow
5
answers
which one is better EdgeR or DEGSeq?
rpkm rna-seq written 3.3 years ago by Whoknows • 590
0
votes
1
answer
412
views
1
answer
Appropriate application of RPKM
rpkm wes rna-seq written 16 months ago by hihi.joshi • 0 • updated 16 months ago by Damian Kao ♦ 14k
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