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<prev • 64 results • page 1 of 3 • next >
3
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1
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74
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1
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WGS vs 16S rRNA
wgs rrna metageomics written 16 days ago by phoenix.sum13 • 0 • updated 16 days ago by Mensur Dlakic • 4.0k
8
votes
2
answers
389
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7 follow
2
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rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rrna sormerna intron bbsuite rna-seq written 4 months ago by Anand Rao • 280
4
votes
1
answer
115
views
1
answer
Is removing rRNA a necessary step in RNA-seq?
rrna sortmerna rna-seq alignment written 8 weeks ago by 2822462298 • 50 • updated 8 weeks ago by Devon Ryan ♦ 94k
4
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1
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789
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1
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rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 16 months ago by mark.dunning • 210 • updated 4 months ago by ATpoint ♦ 31k
1
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0
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166
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0
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 4 months ago by claping • 0
1
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0
answers
153
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0
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total RNA-seq public data with rRNA
rrna rna-seq written 5 months ago by andrewdchen • 0
0
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0
answers
201
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0
answers
operon for rRNA genes
rrna operon written 8 months ago by maricom • 0
1
vote
1
answer
457
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1
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how can i download human ribosomal reference ?
rrna rna-seq written 10 months ago by sabaghianamir70 • 10 • updated 10 months ago by genomax ♦ 80k
0
votes
1
answer
606
views
1
answer
rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rrna ribosome profiling trna ribo-seq written 11 months ago by Beginner • 30
1
vote
2
answers
459
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2
answers
Biomart select rRNA sequences
rrna biomart written 10 months ago by Vlad • 10
0
votes
1
answer
579
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1
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rRna gene finder (software) for bacterial whole genome sequence
genome rrna next-gen whole genome written 14 months ago by hafiz.talhamalik • 230 • updated 14 months ago by Carambakaracho • 2.0k
5
votes
4
answers
3.4k
views
6 follow
4
answers
How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 3.0 years ago by fhsantanna • 470 • updated 17 months ago by jeremieaauger • 0
13
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3
answers
5.4k
views
3
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RNA-seq rRNA contamination
rrna rna-seq written 3.6 years ago by igor ♦ 9.8k • updated 18 months ago by genomax ♦ 80k
0
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1
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607
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1
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sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 23 months ago by debitboro • 170 • updated 20 months ago by caggtaagtat • 930
1
vote
1
answer
617
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1
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Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 21 months ago by fhsantanna • 470 • updated 21 months ago by Carambakaracho • 2.0k
6
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3
answers
2.4k
views
7 follow
3
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 21 months ago by rsafavi • 50
1
vote
0
answers
608
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0
answers
very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 23 months ago by ElUretsky • 20 • updated 23 months ago by Biostar ♦♦ 20
2
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0
answers
1.5k
views
0
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Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 3.7 years ago by mmrcksn • 50 • updated 2.2 years ago by Biostar ♦♦ 20
4
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0
answers
1.4k
views
6 follow
0
answers
Use machine learning as classifier
18s R 16s its rrna written 2.7 years ago by cool.abbecker • 30 • updated 2.6 years ago by Biostar ♦♦ 20
0
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0
answers
1.7k
views
0
answers
how to calculate genome coding density
genome assembly rrna written 2.6 years ago by bsp017 • 30
0
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0
answers
596
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0
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A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 2.7 years ago by blur • 110
0
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0
answers
620
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0
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Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 2.7 years ago by predeus • 1.3k
3
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1
answer
1.4k
views
5 follow
1
answer
RNAmmer returns 8s_rRNA, which is what?
rnammer rrna gene prediction gene annotation written 2.8 years ago by Anand Rao • 280 • updated 2.8 years ago by h.mon ♦ 29k
0
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0
answers
1.1k
views
0
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rRNA secondary structure
rrna secondary_structure written 4.0 years ago by guma44 • 0 • updated 3.0 years ago by Biostar ♦♦ 20
5
votes
1
answer
1.7k
views
1
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Where to find canonical versions of 18S sequences?
18s rrna databases written 4.9 years ago by Pawel Szczesny ♦ 3.2k • updated 3.1 years ago by Alex Bel • 30
3
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1
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1.5k
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1
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ribosomal RNA contamination
rnaseq rrna contamination written 3.2 years ago by lkmklsmn • 920 • updated 3.2 years ago by Devon Ryan ♦ 94k
1
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0
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2.1k
views
0
answers
Ribosomal RNA in RNA-seq data
rrna mapping rna-seq ribosomal written 3.3 years ago by lkmklsmn • 920
1
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1
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1.3k
views
1
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Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 3.3 years ago by dec986 • 210 • updated 3.3 years ago by Devon Ryan ♦ 94k
1
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0
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728
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0
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Do I need to explicitly remove rRNA from E. coli RNAseq data?
rnaseq rrna transcriptomics ecoli written 3.4 years ago by Lina F • 160
2
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0
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2.3k
views
0
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How to compute RNA-Seq mapping stats for rRNAs?
rnaseq rrna alignment rna-seq statistics written 3.5 years ago by PAn • 20
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