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0
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1
answer
138
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1
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What is wrong with my bowtie2 index?
bowtie2 rrna written 8 weeks ago by ksh4718 • 0
3
votes
1
answer
141
views
1
answer
WGS vs 16S rRNA
wgs rrna metageomics written 4 months ago by phoenix.sum13 • 20 • updated 4 months ago by Mensur Dlakic • 6.0k
8
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2
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645
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7 follow
2
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rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rrna sormerna intron bbsuite rna-seq written 8 months ago by Anand Rao • 310
7
votes
1
answer
340
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5 follow
1
answer
Is removing rRNA a necessary step in RNA-seq?
rrna sortmerna rna-seq alignment written 6 months ago by 2822462298 • 50 • updated 6 months ago by Devon Ryan ♦ 96k
4
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1
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991
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1
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rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 21 months ago by mark.dunning • 210 • updated 8 months ago by ATpoint ♦ 36k
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0
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245
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0
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 9 months ago by claping • 0
1
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0
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201
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0
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total RNA-seq public data with rRNA
rrna rna-seq written 9 months ago by andrewdchen • 0
0
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0
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243
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0
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operon for rRNA genes
rrna operon written 13 months ago by maricom • 0
1
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1
answer
659
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1
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how can i download human ribosomal reference ?
rrna rna-seq written 14 months ago by sabaghianamir70 • 10 • updated 14 months ago by genomax ♦ 87k
0
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1
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865
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1
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rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rrna ribosome profiling trna ribo-seq written 15 months ago by Beginner • 40
1
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2
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688
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2
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Biomart select rRNA sequences
rrna biomart written 15 months ago by Vlad • 10
0
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1
answer
804
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1
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rRna gene finder (software) for bacterial whole genome sequence
genome rrna next-gen whole genome written 18 months ago by hafiz.talhamalik • 230 • updated 18 months ago by Carambakaracho • 2.2k
8
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4
answers
4.0k
views
6 follow
4
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How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 3.4 years ago by fhsantanna • 490 • updated 21 months ago by jeremieaauger • 10
13
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3
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6.0k
views
3
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RNA-seq rRNA contamination
rrna rna-seq written 4.0 years ago by igor ♦ 11k • updated 22 months ago by genomax ♦ 87k
0
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1
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708
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1
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sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 2.3 years ago by debitboro • 180 • updated 2.0 years ago by caggtaagtat • 1.1k
1
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1
answer
691
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1
answer
Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 2.1 years ago by fhsantanna • 490 • updated 2.1 years ago by Carambakaracho • 2.2k
7
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3
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3.1k
views
7 follow
3
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 2.1 years ago by rsafavi • 50
1
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0
answers
710
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0
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very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 2.3 years ago by ElUretsky • 20 • updated 2.2 years ago by Biostar ♦♦ 20
2
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0
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1.6k
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0
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Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 4.1 years ago by mmrcksn • 50 • updated 2.6 years ago by Biostar ♦♦ 20
4
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0
answers
1.5k
views
6 follow
0
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Use machine learning as classifier
18s R 16s its rrna written 3.1 years ago by cool.abbecker • 30 • updated 2.9 years ago by Biostar ♦♦ 20
0
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0
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1.8k
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0
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how to calculate genome coding density
genome assembly rrna written 3.0 years ago by bsp017 • 30
0
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0
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645
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0
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A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 3.0 years ago by blur • 120
0
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0
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667
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Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 3.0 years ago by predeus • 1.4k
3
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1
answer
1.6k
views
5 follow
1
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RNAmmer returns 8s_rRNA, which is what?
rnammer rrna gene prediction gene annotation written 3.2 years ago by Anand Rao • 310 • updated 3.2 years ago by h.mon ♦ 30k
0
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1.2k
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0
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rRNA secondary structure
rrna secondary_structure written 4.4 years ago by guma44 • 0 • updated 3.4 years ago by Biostar ♦♦ 20
5
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1
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1.8k
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1
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Where to find canonical versions of 18S sequences?
18s rrna databases written 5.2 years ago by Pawel Szczesny ♦ 3.2k • updated 3.4 years ago by Alex Bel • 30
3
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1
answer
1.6k
views
1
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ribosomal RNA contamination
rnaseq rrna contamination written 3.6 years ago by lkmklsmn • 930 • updated 3.6 years ago by Devon Ryan ♦ 96k
1
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0
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2.4k
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0
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Ribosomal RNA in RNA-seq data
rrna mapping rna-seq ribosomal written 3.7 years ago by lkmklsmn • 930
1
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1
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1.4k
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1
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Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 3.7 years ago by dec986 • 230 • updated 3.7 years ago by Devon Ryan ♦ 96k
1
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0
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765
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0
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Do I need to explicitly remove rRNA from E. coli RNAseq data?
rnaseq rrna transcriptomics ecoli written 3.8 years ago by Lina F • 180
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