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sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 5 months ago by debitboro • 90 • updated 8 weeks ago by caggtaagtat • 290
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130
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Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 10 weeks ago by fhsantanna • 410 • updated 10 weeks ago by Carambakaracho • 500
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3
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326
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5 follow
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 3 months ago by rsafavi • 40
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very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 4 months ago by ElUretsky • 20 • updated 4 months ago by Biostar ♦♦ 20
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How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 17 months ago by fhsantanna • 410 • updated 7 months ago by felipe.zoujiro • 20
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Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 2.2 years ago by mmrcksn • 50 • updated 8 months ago by Biostar ♦♦ 20
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RNA-seq rRNA contamination
rrna rna-seq written 2.1 years ago by igor ♦ 6.5k • updated 11 months ago by Friederike • 2.1k
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Use machine learning as classifier
18s R 16s its rrna written 14 months ago by cool.abbecker • 30 • updated 12 months ago by Biostar ♦♦ 20
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842
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how to calculate genome coding density
genome assembly rrna written 13 months ago by bsp017 • 20
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325
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A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 13 months ago by blur • 90
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365
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Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 14 months ago by predeus • 620
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664
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1
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RNAmmer returns 8s_rRNA, which is what?
rnammer rrna gene prediction gene annotation written 15 months ago by Anand Rao • 160 • updated 15 months ago by h.mon ♦ 19k
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644
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rRNA secondary structure
rrna secondary_structure written 2.5 years ago by guma44 • 0 • updated 18 months ago by Biostar ♦♦ 20
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Where to find canonical versions of 18S sequences?
18s rrna databases written 3.4 years ago by Pawel Szczesny ♦ 3.2k • updated 18 months ago by Alex Bel • 30
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864
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ribosomal RNA contamination
rnaseq rrna contamination written 20 months ago by lkmklsmn • 820 • updated 20 months ago by Devon Ryan ♦ 84k
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Ribosomal RNA in RNA-seq data
rrna mapping rna-seq ribosomal written 21 months ago by lkmklsmn • 820
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800
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Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 21 months ago by dec986 • 110 • updated 21 months ago by Devon Ryan ♦ 84k
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Do I need to explicitly remove rRNA from E. coli RNAseq data?
rnaseq rrna transcriptomics ecoli written 23 months ago by Lina F • 150
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How to compute RNA-Seq mapping stats for rRNAs?
rnaseq rrna alignment rna-seq statistics written 2.0 years ago by PAn • 20
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1.2k
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1
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rRNA quantification: which is the best way?
rrna featurecounts mapping written 2.2 years ago by A. Domingues • 1.6k • updated 2.2 years ago by Charles Plessy • 2.5k
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744
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How to choose the correct ncRNA sequence from a RNA sequence database (Rfam, ENA, RNAcentral, etc)
rrna rnacentral rna ncrna ribosome written 2.3 years ago by Nicholas Kovacs • 0
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Forum: ribosomal depletion for RNA seq
forum rrna ngs rna-seq poly a ribosomal depletion written 2.6 years ago by montenegro • 10 • updated 2.6 years ago by Devon Ryan ♦ 84k
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4
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5 follow
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How Can I Batch Blast Sequences To Identify Them?
rrna sequence blast written 7.5 years ago by John • 750 • updated 2.6 years ago by Antonio R. Franco • 3.8k
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1.6k
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3
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if i am right to remove the contamination?
ribo-seq myposts rrna written 3.1 years ago by F • 3.1k • updated 3.0 years ago by frank1987lee1987 • 10
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filtering rRNA from fastq files or mapping results
gtf rrna rna-seq written 3.6 years ago by tomasscheitel • 20 • updated 3.0 years ago by Biostar ♦♦ 20
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1
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2.0k
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How do you find the percentage of reads contaminated by rRNA?
rrna rna R written 3.1 years ago by espop23 • 60 • updated 3.1 years ago by Gjain ♦ 5.2k
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662
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ribosomal RNA for cleaning contamination during ribo-seq
rrna ribo-seq written 3.1 years ago by F • 3.1k
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728
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database for mucor related diseases?
mucor rrna database sequence written 3.2 years ago by mralikhosravi • 0 • updated 3.2 years ago by PoGibas ♦ 4.7k
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Human Non Coding Rrna Sequences For Download
rrna small rna mirna written 6.5 years ago by Ngsnewbie • 360 • updated 3.3 years ago by Biostar ♦♦ 20
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anlysis of partial sequenced mucor 18S ribosomal RNA gene
gene rrna sequence blast alignment written 3.3 years ago by mralikhosravi • 0
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