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6
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rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rrna sormerna intron bbsuite rna-seq written 12 days ago by Anand Rao • 250 • updated 7 days ago by Brian Bushnell ♦ 17k
4
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1
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654
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rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 13 months ago by mark.dunning • 210 • updated 10 days ago by ATpoint ♦ 26k
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0
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91
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 5 weeks ago by claping • 0
1
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0
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106
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0
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total RNA-seq public data with rRNA
rrna rna-seq written 7 weeks ago by andrewdchen • 0
0
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0
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159
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operon for rRNA genes
rrna operon written 5 months ago by maricom • 0
1
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1
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331
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how can i download human ribosomal reference ?
rrna rna-seq written 6 months ago by sabaghianamir70 • 10 • updated 6 months ago by genomax ♦ 75k
0
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404
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1
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rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rrna ribosome profiling trna ribo-seq written 7 months ago by Beginner • 30
1
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2
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341
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2
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Biomart select rRNA sequences
rrna biomart written 7 months ago by Vlad • 10
0
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1
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436
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1
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rRna gene finder (software) for bacterial whole genome sequence
genome rrna next-gen whole genome written 10 months ago by hafiz.talhamalik • 220 • updated 10 months ago by Carambakaracho • 1.9k
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4
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4
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How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 2.7 years ago by fhsantanna • 440 • updated 14 months ago by jeremieaauger • 0
10
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4.7k
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3
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RNA-seq rRNA contamination
rrna rna-seq written 3.3 years ago by igor ♦ 8.9k • updated 14 months ago by genomax ♦ 75k
0
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1
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533
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1
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sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 20 months ago by debitboro • 140 • updated 17 months ago by caggtaagtat • 900
1
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1
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544
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1
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Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 17 months ago by fhsantanna • 440 • updated 17 months ago by Carambakaracho • 1.9k
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 18 months ago by rsafavi • 40
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very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 19 months ago by ElUretsky • 20 • updated 19 months ago by Biostar ♦♦ 20
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Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 3.4 years ago by mmrcksn • 50 • updated 23 months ago by Biostar ♦♦ 20
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6 follow
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Use machine learning as classifier
18s R 16s its rrna written 2.4 years ago by cool.abbecker • 30 • updated 2.3 years ago by Biostar ♦♦ 20
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how to calculate genome coding density
genome assembly rrna written 2.3 years ago by bsp017 • 30
0
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561
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A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 2.4 years ago by blur • 110
0
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580
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Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 2.4 years ago by predeus • 1.3k
3
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5 follow
1
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RNAmmer returns 8s_rRNA, which is what?
rnammer rrna gene prediction gene annotation written 2.5 years ago by Anand Rao • 250 • updated 2.5 years ago by h.mon ♦ 28k
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987
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rRNA secondary structure
rrna secondary_structure written 3.7 years ago by guma44 • 0 • updated 2.7 years ago by Biostar ♦♦ 20
5
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1
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1.6k
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1
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Where to find canonical versions of 18S sequences?
18s rrna databases written 4.6 years ago by Pawel Szczesny ♦ 3.2k • updated 2.8 years ago by Alex Bel • 30
3
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1
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1.4k
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1
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ribosomal RNA contamination
rnaseq rrna contamination written 2.9 years ago by lkmklsmn • 920 • updated 2.9 years ago by Devon Ryan ♦ 93k
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1.9k
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Ribosomal RNA in RNA-seq data
rrna mapping rna-seq ribosomal written 3.0 years ago by lkmklsmn • 920
1
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1.2k
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1
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Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 3.0 years ago by dec986 • 200 • updated 3.0 years ago by Devon Ryan ♦ 93k
1
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694
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Do I need to explicitly remove rRNA from E. coli RNAseq data?
rnaseq rrna transcriptomics ecoli written 3.1 years ago by Lina F • 160
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2.1k
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How to compute RNA-Seq mapping stats for rRNAs?
rnaseq rrna alignment rna-seq statistics written 3.2 years ago by PAn • 20
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1
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rRNA quantification: which is the best way?
rrna featurecounts mapping written 3.4 years ago by A. Domingues • 2.1k • updated 3.4 years ago by Charles Plessy • 2.7k
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How to choose the correct ncRNA sequence from a RNA sequence database (Rfam, ENA, RNAcentral, etc)
rrna rnacentral rna ncrna ribosome written 3.6 years ago by Nicholas Kovacs • 0
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