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how can i download human ribosomal reference ?
rrna rna-seq written 19 hours ago by sabaghianamir70 • 0 • updated 18 hours ago by genomax ♦ 67k
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132
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rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rrna ribosome profiling trna ribo-seq written 22 days ago by Beginner • 0
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78
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Biomart select rRNA sequences
rrna biomart written 14 days ago by vladikkorobeynyk • 0
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217
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rRna gene finder (software) for bacterial whole genome sequence
genome rrna next-gen whole genome written 3 months ago by hafiz.talhamalik • 60 • updated 3 months ago by Carambakaracho • 1.1k
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371
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rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 6 months ago by mark.dunning • 200
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6 follow
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How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 2.1 years ago by fhsantanna • 440 • updated 7 months ago by jeremieaauger • 0
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3.6k
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RNA-seq rRNA contamination
rrna rna-seq written 2.8 years ago by igor ♦ 7.6k • updated 7 months ago by genomax ♦ 67k
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394
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sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 13 months ago by debitboro • 110 • updated 10 months ago by caggtaagtat • 600
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355
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Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 10 months ago by fhsantanna • 440 • updated 10 months ago by Carambakaracho • 1.1k
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5 follow
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Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 11 months ago by rsafavi • 40
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very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 13 months ago by ElUretsky • 20 • updated 12 months ago by Biostar ♦♦ 20
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Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 2.9 years ago by mmrcksn • 50 • updated 16 months ago by Biostar ♦♦ 20
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6 follow
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Use machine learning as classifier
18s R 16s its rrna written 22 months ago by cool.abbecker • 30 • updated 20 months ago by Biostar ♦♦ 20
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how to calculate genome coding density
genome assembly rrna written 21 months ago by bsp017 • 20
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A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 22 months ago by blur • 100
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492
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Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 22 months ago by predeus • 890
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RNAmmer returns 8s_rRNA, which is what?
rnammer rrna gene prediction gene annotation written 23 months ago by Anand Rao • 210 • updated 23 months ago by h.mon ♦ 25k
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rRNA secondary structure
rrna secondary_structure written 3.2 years ago by guma44 • 0 • updated 2.2 years ago by Biostar ♦♦ 20
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1
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1.5k
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Where to find canonical versions of 18S sequences?
18s rrna databases written 4.0 years ago by Pawel Szczesny ♦ 3.2k • updated 2.2 years ago by Alex Bel • 30
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ribosomal RNA contamination
rnaseq rrna contamination written 2.4 years ago by lkmklsmn • 870 • updated 2.4 years ago by Devon Ryan ♦ 90k
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Ribosomal RNA in RNA-seq data
rrna mapping rna-seq ribosomal written 2.4 years ago by lkmklsmn • 870
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Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 2.4 years ago by dec986 • 190 • updated 2.4 years ago by Devon Ryan ♦ 90k
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Do I need to explicitly remove rRNA from E. coli RNAseq data?
rnaseq rrna transcriptomics ecoli written 2.6 years ago by Lina F • 150
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How to compute RNA-Seq mapping stats for rRNAs?
rnaseq rrna alignment rna-seq statistics written 2.7 years ago by PAn • 20
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rRNA quantification: which is the best way?
rrna featurecounts mapping written 2.9 years ago by A. Domingues • 2.0k • updated 2.9 years ago by Charles Plessy • 2.7k
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882
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How to choose the correct ncRNA sequence from a RNA sequence database (Rfam, ENA, RNAcentral, etc)
rrna rnacentral rna ncrna ribosome written 3.0 years ago by Nicholas Kovacs • 0
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Forum: ribosomal depletion for RNA seq
forum rrna ngs rna-seq poly a ribosomal depletion written 3.3 years ago by montenegro • 10 • updated 3.3 years ago by Devon Ryan ♦ 90k
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5 follow
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How Can I Batch Blast Sequences To Identify Them?
rrna sequence blast written 8.1 years ago by John • 750 • updated 3.3 years ago by Antonio R. Franco • 4.0k
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if i am right to remove the contamination?
ribo-seq myposts rrna written 3.7 years ago by F • 3.4k • updated 3.7 years ago by frank1987lee1987 • 10
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filtering rRNA from fastq files or mapping results
gtf rrna rna-seq written 4.3 years ago by tomasscheitel • 20 • updated 3.7 years ago by Biostar ♦♦ 20
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