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7
votes
2
answers
111
views
2
answers
RNA-seq ribosomal genes vs proteins
scrna-seq rrna rna-seq written 4 days ago by igor ♦ 12k • updated 4 days ago by predeus • 1.5k
0
votes
0
answers
52
views
0
answers
How a can extrac regions V3 and V4 of SILVA database 138?
rrna sequencing written 6 days ago by 1731147b • 0 • updated 6 days ago by Michael Dondrup ♦ 48k
1
vote
1
answer
89
views
1
answer
SRA screening for parasite contamination
parasite rrna host blast data screening written 15 days ago by e.bessette • 10 • updated 15 days ago by Mensur Dlakic • 9.0k
6
votes
1
answer
1.8k
views
1
answer
16S Rrna Sequencing In Industry Applications
rrna written 7.4 years ago by Estebanpv • 20 • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
285
views
2
answers
Downloading 16s rRNA sequence for all bacterial species
assembly 16s ngs rna-seq rrna written 11 weeks ago by asharuthra • 0 • updated 11 weeks ago by Congmin Xu • 0
0
votes
0
answers
138
views
0
answers
RNA-Seq for the analysis of ribosomal RNA (rRNA) processing sites
rrna splicing ribosomal rna rna-seq processing written 12 weeks ago by ferdecha • 0
10
votes
4
answers
8.7k
views
5 follow
4
answers
How Can I Batch Blast Sequences To Identify Them?
rrna sequence blast written 9.9 years ago by John • 770 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
333
views
1
answer
What is wrong with my bowtie2 index?
bowtie2 rrna written 8 months ago by ksh4718 • 0
3
votes
1
answer
229
views
1
answer
WGS vs 16S rRNA
wgs rrna metageomics written 11 months ago by phoenix.sum13 • 20 • updated 11 months ago by Mensur Dlakic • 9.0k
10
votes
2
answers
1.1k
views
8 follow
2
answers
rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rrna sormerna intron bbsuite rna-seq written 15 months ago by Anand Rao • 350
7
votes
1
answer
913
views
5 follow
1
answer
Is removing rRNA a necessary step in RNA-seq?
rrna sortmerna rna-seq alignment written 13 months ago by 2822462298 • 50 • updated 13 months ago by Devon Ryan ♦ 98k
4
votes
1
answer
1.3k
views
1
answer
rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 2.3 years ago by mark.dunning • 220 • updated 15 months ago by ATpoint ♦ 46k
1
vote
0
answers
350
views
0
answers
Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 16 months ago by claping • 0
1
vote
0
answers
288
views
0
answers
total RNA-seq public data with rRNA
rrna rna-seq written 16 months ago by andrewdchen • 0
0
votes
0
answers
313
views
0
answers
operon for rRNA genes
rrna operon written 20 months ago by maricom • 0
2
votes
1
answer
1.1k
views
5 follow
1
answer
how can i download human ribosomal reference ?
rrna rna-seq written 21 months ago by sabaghianamir70 • 20 • updated 21 months ago by GenoMax ♦ 96k
0
votes
1
answer
1.3k
views
1
answer
rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rrna ribosome profiling trna ribo-seq written 22 months ago by Beginner • 40
1
vote
2
answers
1.0k
views
2
answers
Biomart select rRNA sequences
rrna biomart written 22 months ago by Vlad • 10
0
votes
1
answer
1.2k
views
1
answer
rRna gene finder (software) for bacterial whole genome sequence
genome rrna next-gen whole genome written 2.1 years ago by hafiz.talhamalik • 290 • updated 2.1 years ago by Carambakaracho • 2.3k
8
votes
4
answers
4.6k
views
6 follow
4
answers
How to recover a 16S rRNA gene from genome reads?
genome rrna denovo assembly written 3.9 years ago by fhsantanna • 520 • updated 2.4 years ago by jeremieaauger • 10
13
votes
3
answers
7.2k
views
3
answers
RNA-seq rRNA contamination
rrna rna-seq written 4.5 years ago by igor ♦ 12k • updated 2.4 years ago by GenoMax ♦ 96k
0
votes
1
answer
881
views
1
answer
sortMeRNA before or after adapters trimming ?
rrna sortmerna rna-seq written 2.9 years ago by debitboro • 190 • updated 2.6 years ago by caggtaagtat • 1.4k
2
votes
1
answer
827
views
1
answer
Software to group full length 16S rRNA sequences based on identity threshold
species rrna 16s identity matrix written 2.7 years ago by fhsantanna • 520 • updated 2.6 years ago by Carambakaracho • 2.3k
7
votes
3
answers
4.2k
views
7 follow
3
answers
Filtering rRNA from RNAseq data
rrna sortmerna rna-seq fastqc written 2.7 years ago by rsafavi • 50
1
vote
0
answers
827
views
0
answers
very small insert sizes for 16S rRNA after paired-end reads overlap
rrna 16s miseq ngs written 2.9 years ago by ElUretsky • 20 • updated 2.8 years ago by Biostar ♦♦ 20
2
votes
0
answers
1.7k
views
0
answers
Could high duplication be from ribosomal RNA in RNA-seq samples?
rrna sequencing rna-seq duplication written 4.6 years ago by mmrcksn • 50 • updated 3.1 years ago by Biostar ♦♦ 20
4
votes
0
answers
1.6k
views
6 follow
0
answers
Use machine learning as classifier
18s R 16s its rrna written 3.7 years ago by cool.abbecker • 30 • updated 3.5 years ago by Biostar ♦♦ 20
0
votes
0
answers
2.1k
views
0
answers
how to calculate genome coding density
genome assembly rrna written 3.6 years ago by bsp017 • 30
0
votes
0
answers
718
views
0
answers
A DB for rRNA, especially one containing rRNA pseudogenes?
rrna rna-seq written 3.6 years ago by blur • 180
0
votes
0
answers
737
views
0
answers
Annotate multiple rRNAs with variable and constant regions
multiple alignment rrna silva written 3.6 years ago by predeus • 1.5k
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