Showing: samreset
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1
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1.6k
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1
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I can't convert the sam file to fastq file.
fastq sam written 2.6 years ago by porori30000 • updated 1 day ago by RamRS17k
2
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1
answer
1.6k
views
1
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BLAST geneate Output SAM file , Missing aligned sequences.
blast bam sam output rna-seq written 2.6 years ago by clear.choi30 • updated 1 day ago by RamRS17k
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0
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634
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0
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softclip vs mismatch at either end
alignment sam written 2.1 years ago by -_-650 • updated 6 days ago by Biostar ♦♦ 20
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2
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1.7k
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2
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 2.6 years ago by c9r1y0 • updated 8 days ago by RamRS17k
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1
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1.8k
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1
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Extracting Reads by position
alignment sam bam written 2.6 years ago by michael.madans9410 • updated 8 days ago by RamRS17k
3
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1
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177
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1
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0
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0
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96
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0
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2
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1
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127
views
1
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sam file not showing multi mapped reads
bowtie2 sam written 14 days ago by mossigstamboulian30 • updated 13 days ago by RamRS17k
9
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1
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2.3k
views
1
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Pysam Parses Certain Read Pairs Out Of Order?
python next-gen samtools sam sequencing written 8.2 years ago by User 9996770 • updated 13 days ago by RamRS17k
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2
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5 follow
2
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Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.2 years ago by User 9996770 • updated 13 days ago by RamRS17k
9
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2
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2
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Bwa Sam Output Doubts
alignment format sam output bwa written 8.3 years ago by Seq_Ga30 • updated 14 days ago by RamRS17k
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120
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0
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4
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1
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216
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1
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Conversion of sam to bam using samtools
ngs bam samtools sam rna-seq written 7 weeks ago by abhilashreddy4950 • updated 20 days ago by Biostar ♦♦ 20
6
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3
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188
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3
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How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 22 days ago by yech199020 • updated 22 days ago by Pierre Lindenbaum112k
2
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1
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131
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1
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0
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1
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74
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1
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Solved: BWA ALN cannot not find a very obvious match
alignment sam bwa written 24 days ago by max10 • updated 24 days ago by genomax55k
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123
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0
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0
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1
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128
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1
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1
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1
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141
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1
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Efficient processing of a read and its mate from bam file
htsjdk java bam samtools sam written 5 weeks ago by mhasa00630 • updated 5 weeks ago by finswimmer5.4k
3
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2
answers
503
views
2
answers
Iterating through paired-end reads in samtools / pysam
python bam sam written 6 months ago by olavur60 • updated 6 weeks ago by gizone110
2
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0
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132
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0
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52
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1
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41k
views
38 follow
1
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Number of mapped reads from BAM file
reads bam sam mapping written 3.4 years ago by Prakki Rama2.1k • updated 7 weeks ago by iraia.munoa10
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1
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2.3k
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1
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Extract Simple Alignment From Sam/Bam
alignment sam written 6.7 years ago by Revh60 • updated 7 weeks ago by Biostar ♦♦ 20
4
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1
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110
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1
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What is chr EBV in human sam file?
bowtie2 sam written 7 weeks ago by salamandra170 • updated 7 weeks ago by genomax55k
3
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1
answer
128
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1
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How do you convert single end sam file to fastq?
samtfastq fastq sam written 7 weeks ago by MAPK1.3k • updated 7 weeks ago by Pierre Lindenbaum112k
1
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1
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154
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1
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7
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0
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205
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0
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Sort and convert the SAM files to BAM
ngs data analysis samtools rna seq bam sam written 7 weeks ago by amitunited05320 • updated 7 weeks ago by finswimmer5.4k
2
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1
answer
142
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1
answer
Extract the SAM File header section
htsjdk java bam samtools sam written 9 weeks ago by mhasa00630 • updated 9 weeks ago by Pierre Lindenbaum112k
6
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2
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202
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5 follow
2
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Filter sam/bam files
filter bam samtools sam gbs written 3 months ago by ramesh.8v200 • updated 3 months ago by swbarnes24.0k
5
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2
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10.0k
views
2
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