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<prev • 547 results • page 1 of 19 • next >
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Bedtools intersect vcf and bed files
bedtools bcftools sam written 1 day ago by User000 • 280
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1
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75
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1
answer
How convert a fastQ file to a Sam/Bam file
bam sam snp convert written 13 days ago by Adriel Rosa • 0 • updated 13 days ago by WouterDeCoster ♦ 43k
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84
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Parsing SAM output and comparison to IGV
sam rna-seq written 28 days ago by cf556 • 10
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0
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168
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Calculate coverage from SAM file
no header samtools sam coverage written 5 weeks ago by Nandini • 840 • updated 4 weeks ago by onestop_data • 160
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1
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136
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1
answer
understanding pysam.AlignmentFile output
bam pysam sam written 4 weeks ago by bitpir • 140 • updated 4 weeks ago by onestop_data • 160
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2
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6.7k
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2
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Issue with naming convention in bedtools
bedtools sam written 4.8 years ago by A. Domingues • 2.2k • updated 5 weeks ago by Biostar ♦♦ 20
2
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2
answers
4.9k
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6 follow
2
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Insert Size For Illumina Gaiix Paired-End Library From Sam/Bam File
illumina next-gen sam bam written 7.5 years ago by bioinfo • 740 • updated 10 weeks ago by Gabriel R. • 2.7k
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1
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105
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1
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Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
pg sam bwa written 11 weeks ago by lakhujanivijay ♦ 4.7k • updated 11 weeks ago by Devon Ryan ♦ 94k
3
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153
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Working With Large *.Bam Files
software error bam sam written 12 weeks ago by cdc421 • 0 • updated 12 weeks ago by zx8754 ♦ 9.0k
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85
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Alignment Score (AS) tag in minimap2
minimap2 alignment sam written 12 weeks ago by tim.booth • 20
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1
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562
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6 follow
1
answer
Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 7 months ago by abbysue • 10 • updated 3 months ago by Marco Pessoa • 0
3
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2
answers
142
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2
answers
SAM flags needed for paired-end strand-specific differential expression
alignment samtools sam rna-seq written 3 months ago by Etstevens • 0 • updated 3 months ago by kristoffer.vittingseerup • 3.0k
1
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212
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0
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Counting abundance of each gene in SAM/BAM file
gene bam samtools sam abundance written 3 months ago by Hansen_869 • 20
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2
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2.5k
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2
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Identifying The Mismatched Bases And Their Locations On The Chromosome In .Sam File
sam written 6.8 years ago by soosus • 80 • updated 3 months ago by Biostar ♦♦ 20
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1
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154
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1
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exon-intron reads in neuron samples
alignment sam rna-seq bam written 3 months ago by rgescudero • 30 • updated 3 months ago by geek_y ♦ 10k
1
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1
answer
157
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1
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Reconstruct reference sequence from SAM file?
sam written 4 months ago by eholleman • 0 • updated 4 months ago by WouterDeCoster ♦ 43k
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1
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159
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1
answer
Counting starting and ending positions of reads in reference genome
bedtools ngs bam sam rna-seq written 4 months ago by bobbyle0210 • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 126k
1
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1
answer
131
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5 follow
1
answer
Pipe pysam.view() output to pysam.sort()
python sam alignment pysam sort written 4 months ago by Macspider • 3.0k • updated 4 months ago by gb • 1.5k
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1
answer
219
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1
answer
Plenty of gaps with my sam alignment file, why is that?
tablet alignment mapping bam sam written 5 months ago by daniel.castanedamogo • 0 • updated 5 months ago by WouterDeCoster ♦ 43k
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141
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0
answers
How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 5 months ago by jelle • 0
0
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1
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161
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1
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Positions of variant in certain depth
variant sam written 5 months ago by avichaireich • 0
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1
answer
708
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1
answer
Error of SAMSequenceDictionary
samtools sam igv written 21 months ago by niu.shengyong • 50 • updated 5 months ago by Biostar ♦♦ 20
4
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1
answer
187
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1
answer
What are "unused reference sequences" in a bam file?
sam file bam samtools sam bam file written 5 months ago by anniejeanforster • 0 • updated 5 months ago by ATpoint ♦ 29k
15
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1
answer
6.2k
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8 follow
1
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Deciphering Cigar
cigar next-gen samtools sam alignment written 7.6 years ago by Leszek ♦ 4.0k • updated 6 months ago by Biostar ♦♦ 20
0
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163
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0
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GATK RevertSamSpark No Max_Discard_Fraction option
gatk sam written 7 months ago by aalith • 10
2
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2
answers
256
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2
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Having trouble with samtools cat
bam samtools sam written 8 months ago by matthew.dambrosio.1 • 0 • updated 8 months ago by John Marshall ♦ 1.9k
10
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4
answers
10k
views
13 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.7 years ago by lwc628 • 210 • updated 8 months ago by m13113153781 • 0
3
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1
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241
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1
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bwa job - error with file size
fastq alignment bwa rna-seq sam written 8 months ago by Laura SMC • 0
1
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1
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208
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1
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What are the best tools for analyzing and identifying somatic mutations?
vcf bam snp rna-seq sam written 8 months ago by gprashant17 • 70 • updated 8 months ago by ATpoint ♦ 29k
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322
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0
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Help in interpreting result of magic-blast on nt database
nt alignment paired-reads sam magic-blast written 8 months ago by Fabio Marroni • 2.5k
<prev • 547 results • page 1 of 19 • next >
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