Showing: samreset
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Extract all paired reads from sam file
paired sam written 9 hours ago by Picasa310 • updated 7 hours ago by ATPoint1.1k
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Sam To Soap Format Converter
next-gen sam conversion written 5.6 years ago by Casey Bergman17k • updated 4 days ago by Biostar ♦♦ 20
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 18 days ago by Anushka20 • updated 18 days ago by Pierre Lindenbaum98k
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Mismatch and Indel rate in alignment
alignment sam bam written 25 days ago by sbdk8230 • updated 25 days ago by prasundutta87110
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What is the algorithm or formula for converting SAM to BAM?
ngs bam samtools sam written 26 days ago by Phoenix100 • updated 26 days ago by Devon Ryan70k
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How to identify bowtie2 unique mapping using sam flag value?
flag bowtie2 sam rna-seq written 20 months ago by jinxinhao19880 • updated 27 days ago by Biostar ♦♦ 20
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how is TLEN calculated in bowtie2
bowtie2 alignment sam tlen bowtie written 7 weeks ago by shim0 • updated 28 days ago by Biostar ♦♦ 20
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Truncated sam file - Parse error
bam sam bwa written 29 days ago by fiona.newberry60 • updated 29 days ago by ATPoint1.1k
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what should a SAM/BAM record contain when there are no quality scores
bam samtools sam written 5 weeks ago by Ann2.1k • updated 5 weeks ago by jkbonfield30
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Extract line from sam file by column
linux sam awk written 5 weeks ago by zshores0 • updated 5 weeks ago by Devon Ryan70k
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Parsing BAM to genome feature
annotation bam sam rna-seq written 8 weeks ago by dzb0 • updated 8 weeks ago by Devon Ryan70k
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Add tags to BAM/SAM file
sequencing alignment sam bam rna-seq written 8 weeks ago by dzb0 • updated 8 weeks ago by Matt Shirley7.8k
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Missing header sam file
header chip-seq sam bam written 8 weeks ago by G.Car20 • updated 8 weeks ago by Pierre Lindenbaum98k
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7 follow
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How to find the mapping quality (mapQ) score of a variant
vcf sam written 9 weeks ago by gmora10 • updated 9 weeks ago by Lauren10
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BAM/SAM to FASTA conversion
bam sam written 2.6 years ago by biolab950 • updated 10 weeks ago by Chadi Saad30
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Blast+ Sam outfmt parameter check
sam blast written 10 weeks ago by larvalanobium20
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Increase the fifth column ( MAPQ) value in Sam file
mapq alignment sam sequencing written 3 months ago by madhu.912410 • updated 3 months ago by novice690
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Difference between chimeric alignments and multiple mapping
sam flag alignment samtools sam sequencing written 3 months ago by Vanilla30 • updated 3 months ago by Devon Ryan70k
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Cigar And Sequence Length Are Inconsistent In Sam File
sam written 4.4 years ago by xiaoyanli820 • updated 3 months ago by Biostar ♦♦ 20
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