Showing: samreset
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Sam Format Optional Fields Specification
alignment sam written 7 days ago by j_susat40 • updated 7 days ago by Devon Ryan73k
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Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
alignment sam written 6.0 years ago by KCC3.8k • updated 28 days ago by Simply Bioinformatics60
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Detecting junctions from reads spanning large indels
dna-seq sam written 29 days ago by Adrian Pelin2.0k • updated 29 days ago by Pierre Lindenbaum101k
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Extracting Reads Containing A Specific Variant From A Bam File
cigar format sam bam written 4.0 years ago by Nick Stoler60 • updated 5 weeks ago by Biostar ♦♦ 20
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Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 3.8 years ago by bede.portz450 • updated 6 weeks ago by genomax37k
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Two confusion in bam format
alignment sam bam written 8 weeks ago by CY40 • updated 8 weeks ago by Devon Ryan73k
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Why perfectly match (150M) records are not primary alignment in SAM
alignment sam bam written 8 weeks ago by CY40 • updated 8 weeks ago by h.mon9.2k
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Extract all paired reads from sam file
paired sam written 8 weeks ago by Picasa310 • updated 8 weeks ago by ATPoint2.4k
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Sam To Soap Format Converter
next-gen sam conversion written 5.8 years ago by Casey Bergman17k • updated 9 weeks ago by Biostar ♦♦ 20
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 11 weeks ago by Anushka20 • updated 11 weeks ago by Pierre Lindenbaum101k
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Mismatch and Indel rate in alignment
alignment sam bam written 12 weeks ago by sbdk8230 • updated 12 weeks ago by prasundutta87150
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What is the algorithm or formula for converting SAM to BAM?
ngs bam samtools sam written 12 weeks ago by Snijesh VP180 • updated 12 weeks ago by Devon Ryan73k
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How to identify bowtie2 unique mapping using sam flag value?
flag bowtie2 sam rna-seq written 22 months ago by jinxinhao19880 • updated 12 weeks ago by Biostar ♦♦ 20
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how is TLEN calculated in bowtie2
bowtie2 alignment sam tlen bowtie written 3 months ago by shim0 • updated 12 weeks ago by Biostar ♦♦ 20
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Truncated sam file - Parse error
bam sam bwa written 12 weeks ago by fiona.newberry60 • updated 12 weeks ago by ATPoint2.4k
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what should a SAM/BAM record contain when there are no quality scores
bam samtools sam written 3 months ago by Ann2.2k • updated 3 months ago by jkbonfield30
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Extract line from sam file by column
linux sam awk written 3 months ago by zshores0 • updated 3 months ago by Devon Ryan73k
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