Showing: samreset
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Checking MAPQ=255 (unique mapping) interpretation
mapping sam written 18 days ago by BioinformaticsLad80 • updated 18 days ago by Devon Ryan89k
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How to find a variant in a particular position in a bam file only using samtools
bam samtools sam written 25 days ago by tw61730 • updated 25 days ago by swbarnes25.2k
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Finding the number of aligned nucleotides per read in a sam file
cigar stings sam written 6 months ago by ioannis30 • updated 6 weeks ago by jilguero88810
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 5.8 years ago by fridhackery140 • updated 9 weeks ago by ying.kev0
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How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
sam bwa written 6.9 years ago by Leonor Palmeira3.7k • updated 11 weeks ago by Biostar ♦♦ 20
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Find bams with identical names and merge them
shell picard samtools sam bam written 3 months ago by brendes20 • updated 3 months ago by cpad011211k
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Number of unmapped reads after filtering issue
samtools sam sequencing written 3 months ago by max_1950 • updated 3 months ago by finswimmer11k
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Ignore SAM header section using awk
bam sam sequencing written 3 months ago by max_1950 • updated 3 months ago by RamRS21k
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Faster way to get coverage per base
alignment sam written 2.1 years ago by finswimmer11k
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 23 months ago by sbdk8240 • updated 4 months ago by FatihSarigol120
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Contig name in SAM file
contig contigs sam contig name written 4 months ago by maryam.9510 • updated 4 months ago by WouterDeCoster38k
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Extracting tlen From BAM File Using htsjdk
htsjdk bam samtools sam tlen written 2.5 years ago by Hakan.Erol.HE10 • updated 4 months ago by Biostar ♦♦ 20
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Making BAM or SAM files equivalent
alignment popoolation2 sam popoolation bam written 4 months ago by keturner1230 • updated 4 months ago by finswimmer11k
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Filtering noise out of SAM file using CIGAR
cigar sam written 4 months ago by blur100 • updated 4 months ago by Carambakaracho970
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Errors with samtools depth on merged bam file
bam samtools sam written 5 months ago by rbronste230 • updated 5 months ago by Vijay Lakhujani4.0k
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Filtering SAM file based on column numbers
filter alignment sam written 5 months ago by elena.syp0 • updated 5 months ago by Pierre Lindenbaum119k
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sam file not showing multi mapped reads
bowtie2 sam written 7 months ago by Moses60 • updated 5 months ago by Biostar ♦♦ 20
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Get genes and coverage/depth per gene from sam/bam
ngs bam sam coverage per gene depth per gene written 5 months ago by prishly0 • updated 5 months ago by Charles Warden6.6k
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How to ignore truncation error with PySam?
python sam alignment mapping pysam written 6 months ago by O.rka90 • updated 6 months ago by Biostar ♦♦ 20
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