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How convert a fastQ file to a Sam/Bam file
bam sam snp convert written 13 days ago by Adriel Rosa0 • updated 13 days ago by WouterDeCoster43k
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Calculate coverage from SAM file
no header samtools sam coverage written 5 weeks ago by Nandini840 • updated 4 weeks ago by onestop_data160
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understanding pysam.AlignmentFile output
bam pysam sam written 4 weeks ago by bitpir140 • updated 4 weeks ago by onestop_data160
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Issue with naming convention in bedtools
bedtools sam written 4.8 years ago by A. Domingues2.2k • updated 5 weeks ago by Biostar ♦♦ 20
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6 follow
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Insert Size For Illumina Gaiix Paired-End Library From Sam/Bam File
illumina next-gen sam bam written 7.5 years ago by bioinfo740 • updated 10 weeks ago by Gabriel R.2.7k
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Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
pg sam bwa written 11 weeks ago by lakhujanivijay4.7k • updated 11 weeks ago by Devon Ryan94k
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Working With Large *.Bam Files
software error bam sam written 12 weeks ago by cdc4210 • updated 12 weeks ago by zx87549.0k
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Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 7 months ago by abbysue10 • updated 3 months ago by Marco Pessoa0
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Identifying The Mismatched Bases And Their Locations On The Chromosome In .Sam File
sam written 6.8 years ago by soosus80 • updated 3 months ago by Biostar ♦♦ 20
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exon-intron reads in neuron samples
alignment sam rna-seq bam written 3 months ago by rgescudero30 • updated 3 months ago by geek_y10k
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Reconstruct reference sequence from SAM file?
sam written 4 months ago by eholleman0 • updated 4 months ago by WouterDeCoster43k
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5 follow
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Pipe pysam.view() output to pysam.sort()
python sam alignment pysam sort written 4 months ago by Macspider3.0k • updated 4 months ago by gb1.5k
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Error of SAMSequenceDictionary
samtools sam igv written 21 months ago by niu.shengyong50 • updated 5 months ago by Biostar ♦♦ 20
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What are "unused reference sequences" in a bam file?
sam file bam samtools sam bam file written 5 months ago by anniejeanforster0 • updated 5 months ago by ATpoint29k
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8 follow
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Deciphering Cigar
cigar next-gen samtools sam alignment written 7.6 years ago by Leszek4.0k • updated 6 months ago by Biostar ♦♦ 20
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Having trouble with samtools cat
bam samtools sam written 8 months ago by matthew.dambrosio.10 • updated 8 months ago by John Marshall1.9k
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13 follow
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.7 years ago by lwc628210 • updated 8 months ago by m131131537810
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What are the best tools for analyzing and identifying somatic mutations?
vcf bam snp rna-seq sam written 8 months ago by gprashant1770 • updated 8 months ago by ATpoint29k
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