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<prev • 425 results • page 1 of 15 • next >
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Bowtie2 wrong alignment score in local mode with ignore-quals?
alignment sam bowtie written 2 days ago by pavanvidem • 0
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85
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SRAtoolkit: error while running sam-dump
ncbi sra sam sratoolkit written 3 days ago by chahatupretiiitk • 20
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2
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2.5k
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2
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Sam To Soap Format Converter
next-gen sam conversion written 5.6 years ago by Casey Bergman ♦ 17k • updated 3 days ago by Biostar ♦♦ 20
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1
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103
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1
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Is there an R function that transforms a decimal SAM FLAG into a list of strings?
flag R bam sam alignment format written 5 days ago by cristian • 80
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148
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Coverage of reference from the BAM file
alignment sam bam written 7 days ago by brs1111 • 10
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1
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113
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1
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SAM Flags for illumina paired-end reads mapped on transcriptome
paired-end alignment sam flags transcriptome written 9 days ago by Macspider • 1.5k • updated 9 days ago by Devon Ryan ♦ 70k
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1
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117
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1
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 17 days ago by Anushka • 20 • updated 17 days ago by Pierre Lindenbaum ♦ 98k
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1
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151
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1
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Mismatch and Indel rate in alignment
alignment sam bam written 24 days ago by sbdk82 • 30 • updated 24 days ago by prasundutta87 • 110
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2
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144
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2
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What is the algorithm or formula for converting SAM to BAM?
ngs bam samtools sam written 25 days ago by Phoenix • 100 • updated 25 days ago by Devon Ryan ♦ 70k
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2
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How to identify bowtie2 unique mapping using sam flag value?
flag bowtie2 sam rna-seq written 20 months ago by jinxinhao1988 • 0 • updated 26 days ago by Biostar ♦♦ 20
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305
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how is TLEN calculated in bowtie2
bowtie2 alignment sam tlen bowtie written 7 weeks ago by shim • 0 • updated 27 days ago by Biostar ♦♦ 20
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1
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209
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6 follow
1
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Truncated sam file - Parse error
bam sam bwa written 28 days ago by fiona.newberry • 60 • updated 28 days ago by ATPoint • 1.1k
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2
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276
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5 follow
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How to extract only 5-prime hard/soft clipped reads?
clipping sam written 4 weeks ago by ThePresident • 70
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2
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282
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2
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what should a SAM/BAM record contain when there are no quality scores
bam samtools sam written 5 weeks ago by Ann • 2.1k • updated 5 weeks ago by jkbonfield • 30
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1
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184
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1
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Extract line from sam file by column
linux sam awk written 5 weeks ago by zshores • 0 • updated 5 weeks ago by Devon Ryan ♦ 70k
2
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2
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324
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2
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Is there any software that can highlight or show the paired end reads within .sam file?
genome highlight paired end mapping sam written 7 weeks ago by allenyang2003 • 0 • updated 7 weeks ago by Dan D ♦ 6.2k
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277
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0
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The difference between sam files
alignment samtools sam sequencing written 8 weeks ago by jianzheng934963534 • 0
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1
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171
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1
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Parsing BAM to genome feature
annotation bam sam rna-seq written 8 weeks ago by dzb • 0 • updated 8 weeks ago by Devon Ryan ♦ 70k
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1
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264
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1
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Add tags to BAM/SAM file
sequencing alignment sam bam rna-seq written 8 weeks ago by dzb • 0 • updated 8 weeks ago by Matt Shirley ♦ 7.8k
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1
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212
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1
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Missing header sam file
header chip-seq sam bam written 8 weeks ago by G.Car • 20 • updated 8 weeks ago by Pierre Lindenbaum ♦ 98k
1
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0
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181
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From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 8 weeks ago by bitjunkie • 40
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3
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413
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7 follow
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How to find the mapping quality (mapQ) score of a variant
vcf sam written 9 weeks ago by gmora • 10 • updated 9 weeks ago by Lauren • 10
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2
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13k
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2
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BAM/SAM to FASTA conversion
bam sam written 2.6 years ago by biolab • 950 • updated 10 weeks ago by Chadi Saad • 30
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0
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164
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Blast+ Sam outfmt parameter check
sam blast written 10 weeks ago by larvalanobium • 20
3
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1
answer
264
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1
answer
Increase the fifth column ( MAPQ) value in Sam file
mapq alignment sam sequencing written 3 months ago by madhu.9124 • 10 • updated 3 months ago by novice • 690
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284
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Paired-read alignment length from BAM/SAM file
paired-read alignment sam bam written 3 months ago by Soumitra Pal • 10
4
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1
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301
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1
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Difference between chimeric alignments and multiple mapping
sam flag alignment samtools sam sequencing written 3 months ago by Vanilla • 30 • updated 3 months ago by Devon Ryan ♦ 70k
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2
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Cigar And Sequence Length Are Inconsistent In Sam File
sam written 4.4 years ago by xiaoyanli82 • 0 • updated 3 months ago by Biostar ♦♦ 20
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167
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Read metadata from a pacbio bam file
R bam pacbio rsamtools sam written 3 months ago by cristian • 80
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745
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direct two-color Agilent SAM analysis?
agilent R sam microarray written 2.4 years ago by evansjo • 10 • updated 3 months ago by Ace • 10
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