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31
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6
answers
34k
views
19 follow
6
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How To Sort Sam File
samtools sam written 6.4 years ago by Chen990 • updated 4 hours ago by Biostar ♦♦ 20
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64
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0
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51
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0
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2
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118
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5 follow
2
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How to remove reads with only Ns from bam/sam/cram file?
samtools bam cram sam remove reads written 25 days ago by erik.stricker0 • updated 25 days ago by Anand Rao310
1
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1
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89
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1
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0
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0
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1.3k
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0
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Samview from bam file aligned to cDNA reference
bam sam rna-seq written 4.2 years ago by bharata1803460 • updated 27 days ago by Biostar ♦♦ 20
2
votes
2
answers
575
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2
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Making BAM or SAM files equivalent
alignment popoolation2 sam popoolation bam written 19 months ago by keturner1230 • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
2
answers
107
views
2
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Filter bam files based on length of contig
assembly metagenomics bam map sam written 6 weeks ago by susheelbhanu0 • updated 6 weeks ago by ATpoint36k
7
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2
answers
194
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2
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quality check of bam files
gatk quality bam sam written 8 weeks ago by gabri.mochales30 • updated 8 weeks ago by Pierre Lindenbaum129k
10
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2
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8.2k
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2
answers
Could Any One Explain What Information Inside Sam File?
sam written 6.3 years ago by M K500 • updated 11 weeks ago by Biostar ♦♦ 20
7
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1
answer
229
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1
answer
0
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0
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184
views
5 follow
0
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0
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1
answer
173
views
1
answer
How convert a fastQ file to a Sam/Bam file
bam sam snp convert written 5 months ago by Adriel Rosa0 • updated 3 months ago by Biostar ♦♦ 20
4
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3
answers
3.6k
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5 follow
3
answers
Iterating through paired-end reads in samtools / pysam
python bam sam written 2.3 years ago by olavur100 • updated 3 months ago by u30055790
0
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0
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212
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0
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0
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0
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133
views
0
answers
1
vote
0
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269
views
0
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Calculate coverage from SAM file
no header samtools sam coverage written 5 months ago by Nandini840 • updated 5 months ago by onestop_data260
0
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1
answer
246
views
1
answer
understanding pysam.AlignmentFile output
bam pysam sam written 5 months ago by bitpir180 • updated 5 months ago by onestop_data260
11
votes
2
answers
7.2k
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2
answers
Issue with naming convention in bedtools
bedtools sam written 5.2 years ago by A. Domingues2.2k • updated 6 months ago by Biostar ♦♦ 20
2
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2
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5.1k
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6 follow
2
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Insert Size For Illumina Gaiix Paired-End Library From Sam/Bam File
illumina next-gen sam bam written 7.9 years ago by bioinfo750 • updated 7 months ago by Gabriel R.2.7k
1
vote
1
answer
165
views
1
answer
Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
pg sam bwa written 7 months ago by lakhujanivijay5.1k • updated 7 months ago by Devon Ryan95k
3
votes
0
answers
210
views
0
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Working With Large *.Bam Files
software error bam sam written 7 months ago by cdc4210 • updated 7 months ago by zx87549.4k
0
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0
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164
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0
answers
8
votes
1
answer
804
views
6 follow
1
answer
Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 12 months ago by abbysue10 • updated 7 months ago by Marco Pessoa0
3
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2
answers
276
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2
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1
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0
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462
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0
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1
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2
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2.7k
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2
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Identifying The Mismatched Bases And Their Locations On The Chromosome In .Sam File
sam written 7.2 years ago by soosus80 • updated 8 months ago by Biostar ♦♦ 20
0
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1
answer
226
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1
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exon-intron reads in neuron samples
alignment sam rna-seq bam written 8 months ago by rgescudero30 • updated 8 months ago by geek_y11k
1
vote
1
answer
210
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1
answer
Reconstruct reference sequence from SAM file?
sam written 8 months ago by eholleman0 • updated 8 months ago by WouterDeCoster44k
0
votes
1
answer
210
views
1
answer
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