Showing: samreset
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14
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1
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5.7k
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8 follow
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Deciphering Cigar
cigar next-gen samtools sam alignment written 7.1 years ago by Leszek4.0k • updated 8 days ago by Biostar ♦♦ 20
8
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0
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199
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5 follow
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Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 4 weeks ago by abbysue10 • updated 21 days ago by Biostar ♦♦ 20
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64
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2
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147
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Having trouble with samtools cat
bam samtools sam written 8 weeks ago by matthew.dambrosio.10 • updated 7 weeks ago by John Marshall1.7k
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4
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9 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.2 years ago by lwc628200 • updated 8 weeks ago by m131131537810
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133
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5
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21
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1.2k
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2
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2
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0
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201
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0
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Best SAM flags to evaluate host contamination
ngs sam written 12 weeks ago by ctseto70 • updated 12 weeks ago by finswimmer12k
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104
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4
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2
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843
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 20 months ago by Macspider2.8k • updated 3 months ago by shouldsee.gem0
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165
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1
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160
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2
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281
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5 follow
2
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5
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1
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274
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1
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Checking MAPQ=255 (unique mapping) interpretation
mapping sam written 4 months ago by BioinformaticsLad130 • updated 4 months ago by Devon Ryan91k
3
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1
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303
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1
answer
Bam file MC tag as integer
mc bam validatesamfile sam written 4 months ago by chariko30
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2
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300
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2
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How to find a variant in a particular position in a bam file only using samtools
bam samtools sam written 4 months ago by tw61730 • updated 4 months ago by swbarnes26.1k
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456
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5 follow
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0
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171
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3
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329
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Finding the number of aligned nucleotides per read in a sam file
cigar stings sam written 10 months ago by ioannis30 • updated 5 months ago by jilguero88810
1
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239
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1
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6
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5
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4.7k
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7 follow
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 6.2 years ago by fridhackery140 • updated 6 months ago by ying.kev0
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253
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0
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290
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8
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1
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How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
sam bwa written 7.2 years ago by Leonor Palmeira3.7k • updated 6 months ago by Biostar ♦♦ 20
7
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1
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815
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8
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3
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344
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6 follow
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Find bams with identical names and merge them
shell picard samtools sam bam written 7 months ago by brendes20 • updated 7 months ago by cpad011211k
7
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1
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318
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1
answer
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