Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 567 results • page 1 of 19 • next >
0
votes
0
answers
58
views
0
answers
Alignment in SAM but not in counts from STAR aligner
rnaseq sam star rna-seq sequencing written 1 day ago by ericjkort • 0
0
votes
0
answers
45
views
0
answers
Issue when merging FastQ
merging fastq bam mapping sam written 2 days ago by gayal25016 • 0
1
vote
0
answers
141
views
0
answers
Tool: Filtering BAM files efficiently
genome alignment sam bam tool written 7 weeks ago by ddeemer • 0
0
votes
0
answers
134
views
0
answers
Sort Sam file by chromosome and position in python
genome python alignment sam written 8 weeks ago by hectorbaigessanchez • 0
0
votes
1
answer
5.6k
views
7 follow
1
answer
Truncated sam file - Parse error
bam sam bwa written 3.4 years ago by fiona.newberry • 80 • updated 11 weeks ago by dB • 0
0
votes
1
answer
195
views
1
answer
Inside a .sam file, how do I know which read maps where to which scaffold in the assembly?
fasta assembly sam written 12 weeks ago by fullmooninu • 0 • updated 12 weeks ago by colindaven • 2.6k
4
votes
0
answers
225
views
5 follow
0
answers
Revert bam to fastq
bam sam written 3 months ago by MAPK • 1.7k • updated 3 months ago by h.mon ♦ 32k
3
votes
0
answers
226
views
0
answers
Tool: SamReadViewer - A small utility to visualise read alignment directly from sam format without reference.
viewer read sam tool written 3 months ago by Juke34 • 4.9k
3
votes
1
answer
284
views
1
answer
Finding a gene signature among multiple group
rnaseq signature sam written 4 months ago by Rahil • 180 • updated 4 months ago by Kevin Blighe ♦ 69k
3
votes
1
answer
1.9k
views
1
answer
Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 6.9 years ago by Coryza • 30 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
253
views
1
answer
Extract base information from aligned reads in a sam file
reads basepair sam written 5 months ago by yliueagle • 230
38
votes
5
answers
675
views
12 follow
5
answers
Forum: Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
forum bam samtools sam written 5 months ago by 2xijok • 50 • updated 5 months ago by Jeremy Leipzig ♦ 19k
4
votes
1
answer
312
views
5 follow
1
answer
Paired-End Reads and Variant Calling
fastq sam bwa written 5 months ago by ocortes • 0 • updated 5 months ago by h.mon ♦ 32k
2
votes
1
answer
1.4k
views
1
answer
Error running sam-dump
ncbi bam samtools sam written 4.2 years ago by beausoleilmo • 360 • updated 5 months ago by Biostar ♦♦ 20
0
votes
1
answer
270
views
1
answer
Wiggle Files, BAM/SAM Help
wiggle bam sam written 5 months ago by dylan.t.fossl • 0 • updated 5 months ago by jkkbuddika • 160
0
votes
0
answers
185
views
0
answers
How to find all positions of one particular contig to which the short reads have been mapped?
mapping bwa shortreads longreads sam written 5 months ago by Ashi • 10
52
votes
6
answers
45k
views
16 follow
6
answers
BAM/SAM to FASTA conversion
bam sam written 6.0 years ago by biolab • 1.2k • updated 5 months ago by kristina.mahan • 120
0
votes
2
answers
2.0k
views
2
answers
Filtering reads aligned to specific chromosome
bamtofastq bedtools bam sam snp written 4.9 years ago by signauncreal • 0 • updated 5 months ago by Biostar ♦♦ 20
31
votes
6
answers
35k
views
19 follow
6
answers
How To Sort Sam File
samtools sam written 6.9 years ago by Chen • 1.0k • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
245
views
0
answers
bowtie2 '-a' does not return all alignments
bowtie2 alignment sam score written 6 months ago by shim • 10
0
votes
0
answers
198
views
0
answers
Remove reads where quality score length does not equal sequence length
alignment trimming sequence sam quality score written 6 months ago by elisobel • 0
0
votes
2
answers
253
views
5 follow
2
answers
How to remove reads with only Ns from bam/sam/cram file?
samtools bam cram sam remove reads written 7 months ago by erik.stricker • 0 • updated 7 months ago by Anand Rao • 350
1
vote
1
answer
256
views
1
answer
count reads (.sam) mapped to scaffolds with non-standard headers
samtools bbmap sam counts written 7 months ago by rakshy • 0
0
votes
0
answers
1.4k
views
0
answers
Samview from bam file aligned to cDNA reference
bam sam rna-seq written 4.7 years ago by bharata1803 • 490 • updated 7 months ago by Biostar ♦♦ 20
2
votes
2
answers
701
views
2
answers
Making BAM or SAM files equivalent
alignment popoolation2 sam popoolation bam written 2.1 years ago by keturner123 • 0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
2
answers
289
views
2
answers
Filter bam files based on length of contig
assembly metagenomics bam map sam written 7 months ago by susheelbhanu • 0 • updated 7 months ago by ATpoint ♦ 44k
7
votes
2
answers
501
views
2
answers
quality check of bam files
gatk quality bam sam written 8 months ago by gubrins • 60 • updated 8 months ago by Pierre Lindenbaum ♦ 133k
10
votes
2
answers
8.6k
views
2
answers
Could Any One Explain What Information Inside Sam File?
sam written 6.8 years ago by M K • 510 • updated 9 months ago by Biostar ♦♦ 20
7
votes
1
answer
343
views
1
answer
Does my .sam file look ok? How to convert it?
sam rna-seq written 9 months ago by tanya_fiskur • 40
0
votes
0
answers
299
views
5 follow
0
answers
Keep the paired reads whose length less than 400,000 bp
filter alignment sam rna-seq bam written 9 months ago by ek699 • 0
<prev • 567 results • page 1 of 19 • next >
Recent Votes
Recent Locations • All »
  • Stockholm, 2 minutes ago
  • China, 2 minutes ago
  • France, Paris, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2079 users visited in the last hour
_