Showing: samreset
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5 follow
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How to extract reads with no INDEL?
indel samtools sam written 6 days ago by Jeason Rad30 • updated 6 days ago by dariober7.7k
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97
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 14 days ago by sbdk8230 • updated 14 days ago by Brian Bushnell11k
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How to extract sequence message from SAM?
bed sam sequencing written 20 days ago by Jeason Rad30 • updated 20 days ago by Pierre Lindenbaum94k
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131
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Extract specific fragments from SAM and count them
sam snp written 21 days ago by Jeason Rad30 • updated 21 days ago by kennethcondon2007540
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Parsing reads from SAM file by Fwd-Fwd orientation
flag R sam written 4 weeks ago by ThePresident20 • updated 4 weeks ago by Pierre Lindenbaum94k
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samtools updation in linux
next-gen sam written 5 weeks ago by shafnaasmy.v.s0 • updated 5 weeks ago by WouterDeCoster17k
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135
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Understanding Picards HsMetrics
picardtools bam sam written 7 weeks ago by finswimmer77130 • updated 7 weeks ago by Pierre Lindenbaum94k
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88
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Bam file without any sequence
psl2sam sam blat written 7 weeks ago by tiago211287720
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119
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0
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198
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Faster way to get coverage per base
alignment sam written 9 weeks ago by finswimmer77130 • updated 9 weeks ago by Vivek Todur30
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Error of bam-to-sam conversion using samtools
tophat2 samtools sam rna-seq bam written 10 weeks ago by Gary370 • updated 10 weeks ago by genomax28k
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Extract the mapped contig sequences from SAM/BAM file
bam samtools sam bwa written 11 weeks ago by sbdk8230 • updated 11 weeks ago by haro70
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SAM files alignment section: PNEXT
bam samtools sam written 12 weeks ago by AlchemistMoz10 • updated 12 weeks ago by Devon Ryan66k
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Novoalign: right index? and SAM output
novoalign ngs sam mapping written 12 weeks ago by maude0 • updated 12 weeks ago by Devon Ryan66k
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136
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4
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226
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What second field zero means in sam file?
sam written 12 weeks ago by biotech500
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227
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Help: Read Sam File and find chromosome
genome python bam sam sequence written 3 months ago by thiemo.moellenkamp0 • updated 3 months ago by Helene360
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How to convert extended CIGAR to regular CIGAR
cigar bam sam written 3 months ago by artemd0 • updated 3 months ago by Pierre Lindenbaum94k
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7 follow
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Conversion Of Blat Output To Sam/Bam
conversion format sam bam blat written 6.4 years ago by Michael Dondrup41k • updated 4 months ago by Botond Sipos1.5k
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285
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226
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508
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BWA-MEM using long PacBio reads
bwa-mem alignement sam pacbio written 4 months ago by Roxane Boyer220 • updated 4 months ago by Brian Bushnell11k
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229
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Change signification in bam for duplicates
duplicates bam sam written 4 months ago by fedulka50 • updated 4 months ago by Devon Ryan66k
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330
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6 follow
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SAM / BAM alignments
bam sam written 4 months ago by John11k
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281
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1
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importing .SAM files into R (Rstudio)
R sam bowtie written 4 months ago by Ameerosein70 • updated 4 months ago by Goutham Atla7.1k
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