samfilter Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: samfilter • reset

or Classic search

votes

answers

579

views

answers

Help Needed with Pbalign SamFIlter

quiver pbalign pacbio samfilter written 18 months ago by anniiee9 • 0 • updated 18 months ago by Biostar ♦♦ 20

votes

answers

425

views

answers

samFilter Shows CoreDump

quiver pbalign samfilter written 18 months ago by anniiee9 • 0

Recent Votes

Recent Locations • All »

United States, just now
Cambridge, MA, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 2 minutes ago

Recent Awards • All »

Scholar to finswimmer ♦ 2.8k
Teacher to Kevin Blighe ♦ 21k
Appreciated to Emily_Ensembl ♦ 15k
Teacher to genomax ♦ 49k
Commentator to Emily_Ensembl ♦ 15k
Commentator to genomax ♦ 49k

Recent Replies

C: KOBAS web server by jkofsky • 10
Hi, Looks like this is happening again. Who did you email to ask about this? Thanks
A: KOBAS web server by jkofsky • 10
Looks like this issue is happening again... any tips from last time? I would assume they know and...
A: how to make this plot for mutation in paired samples? by igor ♦ 6.2k
OncoPrinter (web-based): http://www.cbioportal.org/oncoprinter.jsp ![enter image description here...
A: Estimating cross contamination in a set of BAMS by igor ♦ 6.2k
A really nice method is [GATK CalculateContamination][1] and gives you an exact contamination est...
C: Simple visual output of Pairwise Sequence alignment by genomax ♦ 49k
https://www.biostars.org/u/47293/ : https://www.biostars.org/p/309884/
C: Clustering of DAVID gene enrichment results from gene expression studies by krushnach80 • 300
@Kevin you have a topMatrix object here , but i did clustering and taking some of the clustered ...
C: how to make this plot for mutation in paired samples? by WouterDeCoster ♦ 29k
https://www.biostars.org/p/309884/
C: Simple visual output of Pairwise Sequence alignment by cschu181 • 1.2k
Could you post an image, would be interesting to see how it looks like.
A: SNPs density with sliding windows by Pierre Lindenbaum ♦ 108k
bedtools [intersect][1] with option -c -c For each entry in A, report the number of overlap...
C: Remove extra sequences without unique names from fasta by Pierre Lindenbaum ♦ 108k
> I concatenate all hundreds of my fasta files into ONE fasta file? ' just testing that runn...
C: What is the recent preference for RNA-seq read deposition perior to publication by i.sudbery • 2.3k
I always deposit in GEO (which automatically forwards to SRA/ENA). I've never had any stress with...
C: GDC server down??? by giselesimasrs • 0
I'm having the same problem (I was using it last week without any problems) My r-base package ve...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1516 users visited in the last hour