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- Do I have to check every fastqc to make good quality?
- A: PDB visualization methods
- Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
- Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
- C: Download ENCODE Project BED files using REST API
- C: Best databases for Chip-Seq
- A: How to search for consensus sequence in RNA-seq data?
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Recent Replies
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C: VEP and Annovar Annotation by
BAGeno • 20
I want two things First is annotation of whole genome. Second is to check pharmacogenomically i...
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C: PDB visualization methods by
juara • 0
Thanks. DS Visualizer does not support mac. Chimera has very basic features unless I do not know ...
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C: VEP and Annovar Annotation by
BAGeno • 20
I am using these options --sift b, --polyphen b, --ccds, --hgvs, --symbol, --regulatory, --bio...
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C: PDB visualization methods by
juara • 0
Thanks for your suggestion. Is there a free trial for PyMOL?
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C: VEP and Annovar Annotation by
BAGeno • 20
I am using standalone VEP
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A: cBioportal survival analysis help by
TriS • 2.9k
if you have some R skills a way to do that is to calculate the "ntile" per each of those genes (i...
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C: Download ENCODE Project BED files using REST API by
mark.ziemann • 870
Perfect! That's exactly what I was after!
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C: Download ENCODE Project BED files using REST API by
tangming2005 • 2.1k
you might want to try the Encodexplorer http://bioconductor.org/packages/release/bioc/html/ENCODE...
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C: How to search for consensus sequence in RNA-seq data? by
Samuel Brady • 190
Great answer with lots of options and details. Thanks Alex.
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A: cBioportal survival analysis help by
Samuel Brady • 190
Unfortunately, there is no way to do this in cBioPortal. cBioPortal will call patients with eithe...
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C: The difference between sam files by
jianzheng934963534 • 0
Thanks for your answer. To be more specific,first,I have an fastq file and I align it to the refe...
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C: Download SAM/BAM files from SRA takes ages!!! by
Matt Shirley ♦ 7.5k
You can easily check fo alignment information in the [sra run browser](https://trace.ncbi.nlm.nih...
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