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Help Needed with Pbalign SamFIlter

quiver pbalign pacbio samfilter written 9 months ago by anniiee9 • 0 • updated 9 months ago by Biostar ♦♦ 20

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samFilter Shows CoreDump

quiver pbalign samfilter written 9 months ago by anniiee9 • 0

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Recent Replies

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I think there's a way to do this that is not pretty, but prepends the ID field in a way that prov...
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If you need TCGA data then you can probably get it from [GDC Data portal][1]. [1]: https://po...
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I think this should just work without the -S and -h, but I'm not sure which samtools version you ...
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Actually, comparing individual genes (miRNA and mRNA) between samples could be interesting, but s...
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One area where species identification is done by sequencing is pathogen identification. Searching...
C: AB1 Files free download by Pierre Lindenbaum ♦ 98k
**UPDATE**: OP wants BCR-ABL related ab1 files: ( https://www.biostars.org/p/274329 )
A: Extract dna sequences from given ids using R codes/package by Jean-Karim Heriche ♦ 13k
Both biomaRt and rentrez should do the job, the difference is that one will give you Ensembl sequ...
A: How to find protein names by knowing their molecular weight. by Pierre Lindenbaum ♦ 98k
search ncbi/protein using entrez field: e.g. 92623 [https://www.ncbi.nlm.nih.gov/protein?term=9...
A: How to find protein names by knowing their molecular weight. by Jean-Karim Heriche ♦ 13k
Short answer: You can't without additional information. In a typical gel, a band is a mixture ...
A: cell type-specific miRNA analysis and miRNA-mRNA expression correlation by lech.kaczmarczyk • 10
Will write more, but now just a brief clarification. > I don't see any problem in using DESeq...
A: How do I extract list of sequences given their IDs ? by Jean-Karim Heriche ♦ 13k
These IDs seem to be for Sclerotinia sclerotiorum genes. This species is a fungus and [available ...
C: MCScanX result problem by kashifalikhan007 • 40
remove this: -num_alignments 5

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