Showing: samtoolsreset
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emtpy bcf file
alignment samtools mpileup written 10 days ago by Illinu80
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Error in plot-vcfstats
samtools bcftools written 7 days ago by bharata1803190
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samtool flagstat question
bam samtools written 21 months ago by alex130 • updated 7 days ago by Biostar ♦♦ 10
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determine unique snp
python samtools vcftools snp mapping written 10 days ago by slimane.khayi20 • updated 10 days ago by Pierre Lindenbaum89k
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samtools flag 1548
bitwise flags samtools written 11 days ago by RT270 • updated 11 days ago by Pierre Lindenbaum89k
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Segmentation fault (core dumped) with Samtools index sorted.bam
bam samtools index written 18 days ago by deepak6430 • updated 18 days ago by Devon Ryan62k
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understanding multi-mapped reads
unique tophat2 samtools multi-mapped written 26 days ago by Assa Yeroslaviz1.0k • updated 25 days ago by Carlo Yague2.2k
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What is mean that mpileup read depth (read count) 0?
samtools mpileup written 4 weeks ago by Peavil10 • updated 4 weeks ago by Devon Ryan62k
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[Samtools] How to extract reads matching a given sequence
sequence alignment samtools sequencing written 2.8 years ago by madkitty490 • updated 5 weeks ago by nyirock0
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Filtering both concordantly and discordantly mapped reads
ngs samtools sequencing written 6 weeks ago by valerie30 • updated 6 weeks ago by d-cameron320
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Why is it absolutely necessary to filter a VCF?
vcf bcftools samtools vcftools filtering written 6 weeks ago by beausoleilmo60 • updated 6 weeks ago by mforde84440
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Sam Tools Pileup Format
format samtools mpileup written 4.9 years ago by Vittorio Fortino20 • updated 6 weeks ago by Biostar ♦♦ 10
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samtools addreplacerg gives error
alignment samtools bam written 6 weeks ago by penington.j0 • updated 6 weeks ago by John Marshall970
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Weird issue with bam file generated by samtools
samtools bam bwa mem written 6 weeks ago by Vijay Lakhujani560 • updated 6 weeks ago by Devon Ryan62k
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How best to parse samtools mpileup results?
vcf samtools vcftools mpileup written 7 weeks ago by yarmda0 • updated 7 weeks ago by Pierre Lindenbaum89k
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Error sorted paired-end .bam using samtools
paired-end erne samtools bam written 9 weeks ago by holbrookjoanna20 • updated 7 weeks ago by John10k
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Piping a bam file to samtools calmd
samtools calmd pipe written 9 weeks ago by rubic110 • updated 9 weeks ago by Dan D5.9k
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