Showing: samtoolsreset
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2
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17
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5 follow
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Merge .bam files by groups of lanes
bam samtools job rna-seq written 34 minutes ago by elb100 • updated 2 minutes ago by drkennetz270
2
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1
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80
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1
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Extract the SAM File header section
htsjdk java bam samtools sam written 20 hours ago by mhasa00630 • updated 8 hours ago by Pierre Lindenbaum110k
3
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1
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88
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1
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VCF files-Keep all alternative alleles
vcf bcftools samtools vcftools snp written 1 day ago by juara10 • updated 1 day ago by Pierre Lindenbaum110k
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2
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130
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5 follow
2
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11
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1
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1
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CanĀ“T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 6.9 years ago by Pilar E.90 • updated 2 days ago by Biostar ♦♦ 20
4
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1
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105
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1
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2
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1
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462
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7 follow
1
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Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 12 months ago by divya20 • updated 5 days ago by swbarnes23.8k
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101
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0
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3
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1
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97
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Extract R1 and R2 bam files from merged bam file
samtools rna-seq written 7 days ago by chahat_u50 • updated 7 days ago by h.mon16k
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72
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5
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121
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1
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4
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130
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1
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Why does this samtools command work?
samtools rna-seq written 7 days ago by chahat_u50 • updated 7 days ago by h.mon16k
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2
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2
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Size different between two uBam file which generate from the same Fastq.
gatk bam samtools written 8 days ago by weichi10 • updated 8 days ago by h.mon16k
13
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1
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188
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8 follow
1
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No alignment, only header in sam file
samtools unix rna-seq written 8 days ago by ss0 • updated 8 days ago by ATpoint5.5k
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1
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139
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1
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3
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2
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6.4k
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How To Filter Against Common Snp Database To Look For Rare Variants?
samtools snp written 6.3 years ago by Bioscientist1.6k • updated 12 days ago by Biostar ♦♦ 20
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61
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4
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GBS SNPs calling
fast-gbs gatk snp calling samtools gbs written 17 months ago by shinken12350 • updated 14 days ago by Arthur Melo0
1
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1
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96
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1
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Adding tag XS to HISAT2 sam files perior to StringTie
stringtie alignment samtools rna-seq hisat2 written 17 days ago by Farbod3.1k • updated 17 days ago by Vijay Lakhujani2.7k
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144
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1
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1
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1
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78
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5 follow
1
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Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 19 days ago by blur90 • updated 19 days ago by Devon Ryan81k
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468
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1
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Sorting samtools output by flag or grepping its tags
flag grep samtools chimeric written 11 months ago by BPors30 • updated 20 days ago by Biostar ♦♦ 20
4
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1
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99
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1
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Does samtools depth know how to handle paired-end reads
samtools coverage written 21 days ago by roy.granit700 • updated 21 days ago by ATpoint5.5k
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108
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difference between mapq=0 and samtools flag 0x900
samtools mapq written 21 days ago by bitpir70 • updated 21 days ago by Devon Ryan81k
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2
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129
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5 follow
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Filter sam/bam files
filter bam samtools sam gbs written 22 days ago by ramesh.8v200 • updated 21 days ago by swbarnes23.8k
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127
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1
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Can't find chr1 in a large fasta file using samtools/htsjdk
fasta assembly reference samtools written 23 days ago by ljw10010 • updated 22 days ago by Eric Lim710
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1
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1
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.bam file of human reference genome (hg19)
samtools written 3.4 years ago by Max130 • updated 23 days ago by Biostar ♦♦ 20
0
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1
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116
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1
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Samtools mpileup returns empty vcf file
samtools mpileup written 29 days ago by shreyasibiswas8830 • updated 29 days ago by Ram15k
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1
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85
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1
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samtools and I/O redirection
samtools written 4 weeks ago by wangdp123110
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