Showing: samtoolsreset
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Run Samtools on multiple files
rnaseq samtools written 3 days ago by V50 • updated 3 days ago by WouterDeCoster19k
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10 follow
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Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.3 years ago by Rm7.5k • updated 5 days ago by cmdcolin630
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150
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5 follow
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samtools view region
paired-end samtools rna-seq written 6 days ago by xd_d40 • updated 6 days ago by dariober7.8k
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SAM/BCF tools output alternate counts
samtools next-gen bcftools snp variant-detection written 10 days ago by jodyphelan0 • updated 10 days ago by Pierre Lindenbaum95k
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106
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samtools sorting to index a BAM file
bam samtools written 11 days ago by db300010 • updated 11 days ago by Pierre Lindenbaum95k
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6 follow
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Sorting .bam file by tag
samtools bamtools sequencing written 3 months ago by Srw10 • updated 12 days ago by cif0770
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179
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Read depth calling for X chromsome - script modification
read depth calling samtools mpileup written 11 months ago by mbhargava20030 • updated 23 days ago by Biostar ♦♦ 20
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fetch fully unaligned pairs and pairs with one unaligned read with samtools view
bam samtools written 2.8 years ago by 141341254653464453.2k • updated 24 days ago by Biostar ♦♦ 20
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No qual scores in VCF
vcf samtools bcftools written 7 months ago by Jon Binkley140 • updated 25 days ago by 5244231890
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samtools mpileup output documentation
samtools mpileup output written 4 weeks ago by bec0 • updated 4 weeks ago by James Bonfield60
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201
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No output from samtools index?
samtools written 7 weeks ago by Helene370
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125
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How can I extract base on specific loci from all reads overlapping that?
bam samtools written 5 weeks ago by Jeason Rad30 • updated 5 weeks ago by cpad01121.0k
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pileup format: what's the difference between upper and lower case?
samtools pileup written 5 weeks ago by blur50 • updated 5 weeks ago by Devon Ryan68k
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5 follow
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How to extract reads with no INDEL?
indel samtools sam written 5 weeks ago by Jeason Rad30 • updated 5 weeks ago by dariober7.8k
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Samtools mpileup -g and -u flags throwing errors for a specific bam file
samtools written 6 weeks ago by top121410 • updated 6 weeks ago by Pierre Lindenbaum95k
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Is samtools' compression of bam to cram lossless?
samtools cram written 9 weeks ago by bjarki.sigurjons10 • updated 7 weeks ago by James Bonfield60
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