Showing: samtoolsreset
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samtools idxstats reports zero aligned or unaligned reads
idxstats samtools written 9 weeks ago by Grinch10 • updated 7 days ago by Biostar ♦♦ 20
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Error with samtools faidx...Different line length in sequence
faidx samtools written 9 weeks ago by oars110 • updated 8 days ago by Biostar ♦♦ 20
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Error of SAMSequenceDictionary
samtools sam igv written 10 days ago by niu.shengyong30 • updated 10 days ago by genomax47k
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Samtools mpileup meaning of IMF and IDV
vcf samtools mpileup written 2.7 years ago by cruckert810 • updated 12 days ago by vo20
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How reads are considered as mapped using samtools idxstats?
htseq idxstats samtools written 19 days ago by Vijay Lakhujani2.1k • updated 18 days ago by Pierre Lindenbaum107k
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samtools mpileup output only contains vcf header
variant calling samtools mpileup written 20 days ago by s10206012510 • updated 19 days ago by swbarnes23.5k
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no output after running samtools depth
bam samtools written 21 days ago by Ana100
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How to simply extract certain filed from sam file
assembly samtools sam written 25 days ago by 93496353410 • updated 25 days ago by swbarnes23.5k
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Remove reads counts overlapping with blacklist regions in BAM files
chip-seq samtools written 2.1 years ago by armandorp30 • updated 26 days ago by Biostar ♦♦ 20
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Should PCR duplicates always be removed?
gbs samtools pcr duplicates written 10 months ago by jtwalker20 • updated 5 weeks ago by Biostar ♦♦ 20
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BAM File Export Coverage Values from IGV or using PySam/Samtools
alignment samtools igv bam sequencing written 5 weeks ago by EOX12310 • updated 5 weeks ago by cpad01125.2k
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 5 weeks ago by Noam Teyssier10 • updated 5 weeks ago by Kevin Blighe19k
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Does samtools view -b -h <input.bam> -L <input.bed> keep the original header?
header samtools written 6 weeks ago by rubic160 • updated 6 weeks ago by d-cameron1.7k
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samtools faidx error
faidx samtools written 9 months ago by rbronste160 • updated 6 weeks ago by acavga130
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