Showing: samtoolsreset
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bcftools: DP filter based on chromosome and sex
wgs pyvcf bcftools samtools vcftools written 6 days ago by bsmith030465100 • updated 6 days ago by Pierre Lindenbaum112k
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Pysam Parses Certain Read Pairs Out Of Order?
python next-gen samtools sam sequencing written 8.2 years ago by User 9996770 • updated 9 days ago by Ram17k
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141
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Indel calling from sanger reads
bcftools samtools sequencing written 15 days ago by fabian.grammes10 • updated 15 days ago by Ram17k
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Extract reads within given region, and their mates
bam samtools written 3.2 years ago by user230613260 • updated 16 days ago by Ram17k
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210
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Conversion of sam to bam using samtools
ngs bam samtools sam rna-seq written 7 weeks ago by abhilashreddy4950 • updated 17 days ago by Biostar ♦♦ 20
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How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 19 days ago by yech199020 • updated 18 days ago by Pierre Lindenbaum112k
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201
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filtering reads that are uniquely mapped
python alignment samtools rna-seq written 20 days ago by florian.bernard520 • updated 20 days ago by finswimmer5.3k
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pysam truncated file error
python samtools pysam written 14 months ago by pupatel0 • updated 27 days ago by Biostar ♦♦ 20
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5 follow
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Comparing reads of multiple BAM files (using getopts for parsing)
bam samtools seqtl getopts written 29 days ago by m9390 • updated 29 days ago by jrj.healey6.7k
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133
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samtools error #E27
samtools written 4 weeks ago by michael0 • updated 4 weeks ago by Ram17k
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1
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Bcftools view options for SNPs calling.
bcftools samtools snp mpileup written 3.2 years ago by Eddie_I10 • updated 4 weeks ago by Kevin Blighe28k
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1
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177
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Variant Allele Frequency
vcf samtools snp written 5 weeks ago by kspata30 • updated 4 weeks ago by btsui260
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idxstats non mapped reads
idxstats alignment samtools written 5 weeks ago by haro230 • updated 5 weeks ago by Devon Ryan84k
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139
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Efficient processing of a read and its mate from bam file
htsjdk java bam samtools sam written 5 weeks ago by mhasa00630 • updated 5 weeks ago by finswimmer5.3k
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167
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Order of samtools mpileup - arbitrary or not?
samtools mpileup written 5 weeks ago by blur90 • updated 5 weeks ago by Devon Ryan84k
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5 follow
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Which indication of a failure can be found in bwa-mem or samtools' output?
samtools bwa written 5 weeks ago by serpalma.v10 • updated 5 weeks ago by ATpoint7.4k
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Extract the mate pair information with htsjdk
htsjdk bam samtools written 6 weeks ago by mhasa00630 • updated 6 weeks ago by Pierre Lindenbaum112k
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131
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TLEN sam format
alignment samtools written 6 weeks ago by hpapoli60 • updated 6 weeks ago by Amitm1.6k
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107
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mpileup mapping quality
samtools mapq written 6 weeks ago by hpapoli60 • updated 6 weeks ago by Kevin Blighe28k
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7
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Sort and convert the SAM files to BAM
ngs data analysis samtools rna seq bam sam written 7 weeks ago by amitunited05320 • updated 7 weeks ago by finswimmer5.3k
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212
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174
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93 follow
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How To Filter Mapped Reads With Samtools
samtools written 5.9 years ago by sohadb1357440 • updated 8 weeks ago by Simply Bioinformatics110
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1
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607
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11 follow
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264
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samtools sort: truncated file. Aborting
truncated file samtools written 8 weeks ago by yuabrahamliu30 • updated 8 weeks ago by swbarnes24.0k
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