Showing: samtoolsreset
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Mauve alignment vs samtools for SNP calling
snp calling alignment samtools snp mauve written 10 days ago by gabriel.jabud0 • updated 10 days ago by jrj.healey11k
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[bcf_sync] incorrect number of fields (0 != 5) at 0:0
software error genome samtools snp bcftools written 3.1 years ago by david.4.ray10 • updated 17 days ago by zx87546.8k
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Sorting of bam files
samtools rna-seq written 18 days ago by Liftedkris0 • updated 18 days ago by ATpoint14k
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How to remove bam files that don't contain matching reads
bowtie2 bam samtools written 23 days ago by samlambrechts299130 • updated 23 days ago by Pierre Lindenbaum118k
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remove duplicates with markdup
samtools rna-seq written 27 days ago by dimitrischat60 • updated 27 days ago by h.mon24k
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Convert BAM files to paired end FASTQ
fastq bam samtools written 4 weeks ago by berke.toptas0 • updated 4 weeks ago by JC7.6k
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From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 4 weeks ago by raquelgarza9530 • updated 4 weeks ago by h.mon24k
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Multimapping reads intervention in SNP calling
alignment samtools snp mpileup written 3 months ago by sambioinfo20180 • updated 4 weeks ago by Biostar ♦♦ 20
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 5.7 years ago by fridhackery140 • updated 5 weeks ago by ying.kev0
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Extract reads within given region, and their mates
bam samtools written 3.7 years ago by user230613270 • updated 6 weeks ago by cmdcolin1.1k
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Efficent Estimation of Sequencing Coverage
samtools coverage written 6 weeks ago by dario.garvan430 • updated 6 weeks ago by harold.smith.tarheel4.3k
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Samtools problem with running (Conda)
samtools conda written 6 weeks ago by bwczech60 • updated 6 weeks ago by Devon Ryan88k
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Samtools and fax, deal with strand
samtools written 6 weeks ago by Darrill0
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SNP calling using samtools
rnaseq samtools bcftools snp mpileup written 10 weeks ago by ankit4035hinsu10 • updated 8 weeks ago by Biostar ♦♦ 20
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Can BWA restart a calculation after a break?
samtools bwa written 8 weeks ago by DNAngel20 • updated 8 weeks ago by dariober9.9k
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Strange output of samtools flag stat?
mouse samtools rna-seq hisat2 written 8 weeks ago by heking0 • updated 8 weeks ago by Istvan Albert ♦♦ 79k
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Audit trail for Bioinformatics software tools
next-gen alignment samtools align written 10 weeks ago by kspata40 • updated 8 weeks ago by Biostar ♦♦ 20
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