Showing: samtoolsreset
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Variant calling by using samtools and bcftools
variant calling samtools bcftools written 5 days ago by hasani.iut640 • updated 5 days ago by ATpoint12k
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samtools mpileup keeps making an empty file
samtools pileup written 8 days ago by James Reeve30 • updated 8 days ago by gab20
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problem with install samtools
samtools rna-seq written 26 days ago by sabaghianamir700 • updated 8 days ago by Biostar ♦♦ 20
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samtools covert to bam, sort and index all gz.sam
parellel samtools written 11 days ago by cmccabe170 • updated 10 days ago by cmdcolin1.0k
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read depth using samtools
samtools depth written 11 days ago by sara_wasl0 • updated 11 days ago by benformatics400
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Multimapping reads intervention in SNP calling
alignment samtools snp mpileup written 4 weeks ago by sambioinfo20180 • updated 11 days ago by Biostar ♦♦ 20
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Find bams with identical names and merge them
shell picard samtools sam bam written 14 days ago by brendes20 • updated 13 days ago by cpad011210k
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Error in samtools fixmate when dealing with published pair-end data
chip-seq samtools written 15 days ago by jamwest1010 • updated 15 days ago by ATpoint12k
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Number of unmapped reads after filtering issue
samtools sam sequencing written 21 days ago by max_1910 • updated 20 days ago by finswimmer8.9k
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 4 weeks ago by Mehulsharma.25310 • updated 4 weeks ago by h.mon22k
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How To Distinguish Heterozygotes And Homozygotes From Variants In Vcf Format?
vcf samtools written 7.3 years ago by Shinvkuo130 • updated 5 weeks ago by Biostar ♦♦ 20
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Extracting the full read ID when converting from BAM -> FASTQ
fastq bam samtools bwa written 5 weeks ago by ttmigueltt0 • updated 5 weeks ago by toralmanvar730
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Failed to populate reference for id 1?
samtools written 5 weeks ago by cmdcolin1.0k
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samtools: splitting a bam file putting all scaffolds together
splitting bam samtools scaffold written 6 weeks ago by Fedster20 • updated 6 weeks ago by finswimmer8.9k
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How to retain SEQ and QUAL fields in BAM file after filtering?
bam samtools bwa written 6 weeks ago by toddknutson50 • updated 6 weeks ago by Pierre Lindenbaum116k
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How to remove singletons in a BAM file using samtools
singletons alignment samtools bwa written 6 weeks ago by neranjan0 • updated 6 weeks ago by finswimmer8.9k
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Issues with Marking Duplicates in Picard
gatk picard samtools sorting bwa written 6 weeks ago by sarah.kettelkamp0 • updated 6 weeks ago by goodez420
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Extracting tlen From BAM File Using htsjdk
htsjdk bam samtools sam tlen written 2.3 years ago by Hakan.Erol.HE10 • updated 6 weeks ago by Biostar ♦♦ 20
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Error in bcftools view -bvcg command
vcf samtools bcftools snp written 7 weeks ago by hafiz.talhamalik40 • updated 7 weeks ago by WouterDeCoster35k
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