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Recent Replies
Comment: Gene prediction software
by
Darked89
4.4k
Looks like there are five Clarias genomes:
* https://www.ncbi.nlm.nih.gov/genome/?term=txid13012[Organism:exp]
The most complete seems t…
Comment: Alignment of case vs. control from different origin
by
sativus
•
0
Again, thank you so much for these very clearly explained summaries. After reading some articles on the matter, i feel i have a much better…
Answer: Extract sequences from a fastq file by a list of IDs
by
colindaven
4.9k
Some people I know have used filter-fastq successfully: https://github.com/Floor-Lab/filter-fastq
Comment: Extract sequences from a fastq file by a list of IDs
by
Pierre Lindenbaum
154k
> but none of them work for me
https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs
by
Pierre Lindenbaum
154k
https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs
by
mhpakdel96
•
0
I have tried this one before but the output file is empty
Comment: Extract sequences from a fastq file by a list of IDs
by
mhpakdel96
•
0
I have tried all of them but none of them work for me
Comment: Extract sequences from a fastq file by a list of IDs
by
Pierre Lindenbaum
154k
why screenshots when you can just copy and paste the text ? https://www.biostars.org/p/45356/ https://www.biostars.org/p/201971/ https://w…
Comment: Limma returned only positive logFC values
by
ATpoint
72k
Design, not counts. Show the model.matrix. Is this even raw counts what you have there in the dput rather than any normalized values?
Comment: CIBERSORT Error: File not found
by
ATpoint
72k
No code or anything shown, this is not reproducible. CIBERSORT is a blackbox anyway, so you should email their helpdesk if that exists.
Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
by
rohitsatyam102
▴
690
Answering my own query!
No the IQtree will not test all 480 DNA models I believe having seen the log printed on the screen:
```
Create in…
Answer: Is PanCan data microarray or rna-seq
by
ATpoint
72k
Illumina HiSeq is a sequencing machine / platform, so RNA-seq, not array.
Comment: What does "OS_CNSR" and "PFS_CNSR" mean?
by
JACKY
▴
100
So in other words, I could say that 1 is still alive, and 0 is dead ?
And what about "PFS_P_CNSR" and "OS_P", what is the meaning of it?
Comment: Gene prediction software
by
subashini.fbtpb106
▴
20
Thanks for the answer.
The draft genome of walking catfish Clarias magur with the coverage of 94 percent of estimated genome size. Assembl…
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