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9
votes
2
answers
86
views
5 follow
2
answers
Split delimited text into a new row
grep sed awk written 2 days ago by Ambika30 • updated 2 days ago by zx87549.6k
3
votes
1
answer
113
views
1
answer
Extract genes names from GOrilla output file
gene grep sed go awk written 22 days ago by rrapopor10 • updated 22 days ago by rpolicastro1.7k
2
votes
1
answer
142
views
1
answer
0
votes
1
answer
114
views
1
answer
Extract all seqs bewteen two seqs ID in Fastq
fastq sed awk written 9 weeks ago by erwan.scaon810 • updated 9 weeks ago by Pierre Lindenbaum130k
0
votes
4
answers
4.0k
views
4
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 2.5 years ago by tpaisie70 • updated 10 weeks ago by Anna80
1
vote
1
answer
159
views
1
answer
renaming fasta file with part of fasta header
sed awk written 3 months ago by KG10 • updated 3 months ago by genomax89k
3
votes
3
answers
176
views
3
answers
unix, awk or sed question on splitting lines
sed unix awk written 3 months ago by geneart$$20 • updated 3 months ago by genomax89k
0
votes
2
answers
150
views
2
answers
removing rows if X percentages of columns / fields are empty
next-gen sed snp awk written 4 months ago by waqasnayab200 • updated 4 months ago by cpad011214k
4
votes
3
answers
198
views
5 follow
3
answers
0
votes
0
answers
133
views
0
answers
1
vote
2
answers
423
views
2
answers
How to delete last 5 characters off of FASTA header?
fasta header sed written 5 months ago by angela10 • updated 5 months ago by wm490
1
vote
1
answer
183
views
1
answer
Problem using SED for change IDs in gff file
gff sed written 6 months ago by luciabilbao030 • updated 6 months ago by RamRS30k
2
votes
1
answer
196
views
1
answer
sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf processing sed written 6 months ago by Jautis290 • updated 6 months ago by finswimmer13k
3
votes
1
answer
241
views
1
answer
grep sorting question
grep awk sed unix bash written 7 months ago by rbronste360 • updated 7 months ago by RamRS30k
2
votes
0
answers
172
views
0
answers
8
votes
2
answers
721
views
6 follow
2
answers
8
votes
2
answers
266
views
7 follow
2
answers
Removing the last part of fasta header in many alignmnet files
fasta loop sed bash written 11 months ago by Badh20 • updated 11 months ago by JC11k
12
votes
1
answer
554
views
7 follow
1
answer
extract lines with multiple conditions on multiple fields/column
grep sed awk written 12 months ago by Sam20 • updated 12 months ago by Arup Ghosh2.7k
3
votes
1
answer
2.4k
views
1
answer
Modifying fasta header
perl python sed unix awk written 6.1 years ago by empyrean999170 • updated 13 months ago by RamRS30k
5
votes
1
answer
327
views
1
answer
Delete character from sequence id
sed written 13 months ago by ericcabarroso0
1
vote
2
answers
325
views
2
answers
How to remove all characters after a specific pattern?
linux sed rna-seq awk written 13 months ago by star240 • updated 13 months ago by Jeffin Rockey1.1k
3
votes
1
answer
282
views
1
answer
extracting last word in [ ]
grep sed terminal linux written 14 months ago by 1234anjalianjali123430 • updated 14 months ago by ATpoint38k
21
votes
4
answers
411
views
7 follow
4
answers
Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 14 months ago by Ambika30 • updated 14 months ago by SMK1.9k
8
votes
1
answer
555
views
1
answer
Using awk or sed to edit a column in a gtf file
awk sed gft linux written 15 months ago by imda10 • updated 15 months ago by geek_y11k
6
votes
2
answers
276
views
6 follow
2
answers
Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 16 months ago by camerond150 • updated 16 months ago by shawn.w.foley1.2k
3
votes
1
answer
391
views
1
answer
Splitting string in a column using character
regex sed snp awk written 18 months ago by sofie_carolina20 • updated 18 months ago by zx87549.6k
5
votes
2
answers
739
views
2
answers
How to rename duplicate fasta headers after the first underscore '_'?
fasta duplicate header sed awk written 18 months ago by MB20 • updated 18 months ago by Carambakaracho2.2k
1
vote
0
answers
509
views
0
answers
6
votes
1
answer
846
views
1
answer
How to extract organisms name from the headers in a multi-fasta file?
fasta header sed regex written 19 months ago by MB20 • updated 19 months ago by finswimmer13k
4
votes
3
answers
595
views
3
answers
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