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fasta file extraction
fasta sed awk written 27 days ago by amitpande740 • updated 26 days ago by cpad011214k
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112
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201
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Replace FASTA file headers
fasta loop sed written 5 weeks ago by Begonia_pavonina20 • updated 5 weeks ago by Joe18k
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Split delimited text into a new row
grep sed awk written 9 weeks ago by Ambika30 • updated 9 weeks ago by zx87549.7k
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1
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169
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Extract genes names from GOrilla output file
gene grep sed go awk written 12 weeks ago by rrapopor10 • updated 12 weeks ago by rpolicastro2.3k
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Running a code in batch mode on a list of files
grep sed awk written 3 months ago by A3.9k
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137
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Extract all seqs bewteen two seqs ID in Fastq
fastq sed awk written 4 months ago by erwan.scaon810 • updated 4 months ago by Pierre Lindenbaum131k
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Changing names of Fasta headers
fasta sequence sed unix bash loop written 2.7 years ago by tpaisie70 • updated 4 months ago by Anna90
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renaming fasta file with part of fasta header
sed awk written 5 months ago by KG10 • updated 5 months ago by genomax92k
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205
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unix, awk or sed question on splitting lines
sed unix awk written 5 months ago by geneart$$40 • updated 5 months ago by genomax92k
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removing rows if X percentages of columns / fields are empty
next-gen sed snp awk written 6 months ago by waqasnayab200 • updated 6 months ago by cpad011214k
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0
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176
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How to delete last 5 characters off of FASTA header?
fasta header sed written 8 months ago by angela10 • updated 8 months ago by wm490
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211
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1
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Problem using SED for change IDs in gff file
gff sed written 8 months ago by luciabilbao030 • updated 8 months ago by RamRS30k
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1
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233
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1
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sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf processing sed written 9 months ago by Jautis290 • updated 9 months ago by finswimmer14k
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269
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grep sorting question
grep awk sed unix bash written 9 months ago by rbronste360 • updated 9 months ago by RamRS30k
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198
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Difficult filtering scenario of BED file
grep sed awk written 10 months ago by rbronste360
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6 follow
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8
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302
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7 follow
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Removing the last part of fasta header in many alignmnet files
fasta loop sed bash written 13 months ago by Badh20 • updated 13 months ago by JC12k
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7 follow
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extract lines with multiple conditions on multiple fields/column
grep sed awk written 15 months ago by Sam20 • updated 15 months ago by Arup Ghosh2.7k
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1
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Modifying fasta header
perl python sed unix awk written 6.3 years ago by empyrean999170 • updated 15 months ago by RamRS30k
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349
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1
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Delete character from sequence id
sed written 15 months ago by ericcabarroso0
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341
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How to remove all characters after a specific pattern?
linux sed rna-seq awk written 15 months ago by star260 • updated 15 months ago by Jeffin Rockey1.1k
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292
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extracting last word in [ ]
grep sed terminal linux written 16 months ago by 1234anjalianjali123430 • updated 16 months ago by ATpoint41k
21
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4
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428
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7 follow
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Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 17 months ago by Ambika30 • updated 17 months ago by AK1.9k
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633
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Using awk or sed to edit a column in a gtf file
awk sed gft linux written 18 months ago by imda10 • updated 18 months ago by geek_y11k
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6 follow
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 18 months ago by camerond150 • updated 18 months ago by shawn.w.foley1.2k
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Splitting string in a column using character
regex sed snp awk written 20 months ago by sofie_carolina20 • updated 20 months ago by zx87549.7k
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