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How to delete last 5 characters off of FASTA header?
fasta header sed written 9 days ago by angela10 • updated 9 days ago by wm350
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84
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1
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Problem using SED for change IDs in gff file
gff sed written 4 weeks ago by luciabilbao030 • updated 4 weeks ago by RamRS26k
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1
answer
75
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1
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sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf processing sed written 5 weeks ago by Jautis290 • updated 5 weeks ago by finswimmer13k
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1
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142
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1
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grep sorting question
grep awk sed unix bash written 7 weeks ago by rbronste340 • updated 7 weeks ago by RamRS26k
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109
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0
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7
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478
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6 follow
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8
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196
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7 follow
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Removing the last part of fasta header in many alignmnet files
fasta loop sed bash written 5 months ago by Badh20 • updated 5 months ago by JC9.7k
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1
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298
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7 follow
1
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extract lines with multiple conditions on multiple fields/column
grep sed awk written 7 months ago by Sam20 • updated 7 months ago by Arup Ghosh2.3k
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1
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2.2k
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1
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Modifying fasta header
perl python sed unix awk written 5.7 years ago by empyrean999160 • updated 7 months ago by RamRS26k
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1
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270
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1
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Delete character from sequence id
sed written 7 months ago by ericcabarroso0
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246
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How to remove all characters after a specific pattern?
linux sed rna-seq awk written 7 months ago by star230 • updated 7 months ago by Jeffin Rockey1.1k
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1
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235
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1
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extracting last word in [ ]
grep sed terminal linux written 8 months ago by 1234anjalianjali123430 • updated 8 months ago by ATpoint32k
21
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4
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348
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7 follow
4
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Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 9 months ago by Ambika30 • updated 9 months ago by SMK1.9k
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1
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369
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1
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Using awk or sed to edit a column in a gtf file
awk sed gft linux written 10 months ago by imda10 • updated 10 months ago by geek_y10k
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218
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6 follow
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 10 months ago by camerond150 • updated 10 months ago by shawn.w.foley1.2k
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337
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1
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Splitting string in a column using character
regex sed snp awk written 12 months ago by sofie_carolina20 • updated 12 months ago by zx87549.1k
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486
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2
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How to rename duplicate fasta headers after the first underscore '_'?
fasta duplicate header sed awk written 13 months ago by MB20 • updated 13 months ago by Carambakaracho2.0k
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394
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0
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6
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1
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How to extract organisms name from the headers in a multi-fasta file?
fasta header sed regex written 13 months ago by MB20 • updated 13 months ago by finswimmer13k
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3
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512
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1
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441
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Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 15 months ago by sdbaney0 • updated 15 months ago by RamRS26k
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1
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2
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434
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1
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Proper sed format to remove and of line characters?
fasta sed written 16 months ago by stacy73440 • updated 16 months ago by jcabraham0
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7
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13k
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15 follow
7
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Remove duplicates in fasta file based on ID
fasta sed sort written 4.9 years ago by oliver.bayfield130 • updated 16 months ago by michau30
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1
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808
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1
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awk and sed in bash script and no output
bash sed awk written 16 months ago by bk1140 • updated 16 months ago by Alex Reynolds29k
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1
answer
437
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1
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Replace between character and white space using unix sed
replace sed unix written 17 months ago by dllopezr60 • updated 17 months ago by Kevin Blighe56k
12
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1
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467
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1
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Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 17 months ago by bk1140 • updated 17 months ago by Joe16k
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1
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580
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1
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10
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4.0k
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5 follow
1
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Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 3.0 years ago by eoin30 • updated 18 months ago by savscosta0
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570
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5 follow
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sed regex code help wanted
microbiome regular expressions sed written 19 months ago by bgold040 • updated 19 months ago by RamRS26k
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