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33
votes
7
answers
14k
views
15 follow
7
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 5.0 years ago by oliver.bayfield130 • updated 18 months ago by michau30
18
votes
4
answers
847
views
7 follow
4
answers
Remove text and keep '> + ID' in fasta file
fasta sed written 2.2 years ago by Harumi10 • updated 2.2 years ago by Alex Reynolds30k
6
votes
4
answers
507
views
5 follow
4
answers
Join multiple sequence lines in to one.
alignment sequence sed awk written 24 months ago by MB20 • updated 24 months ago by cpad011213k
21
votes
4
answers
372
views
7 follow
4
answers
Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 10 months ago by Ambika30 • updated 10 months ago by SMK1.9k
6
votes
3
answers
1.5k
views
3
answers
[SOLVED] manipulating text in linux enviroment
pipeline sed file manipulation awk written 6.1 years ago by theodore60 • updated 3.1 years ago by Biostar ♦♦ 20
5
votes
3
answers
1.7k
views
3
answers
how to change the header of input file
fasta file header sed awk written 6.0 years ago by Raghav100 • updated 6.0 years ago by JC10k
11
votes
3
answers
6.4k
views
3
answers
Extract data using awk/sed and output to different files
sed shell awk written 4.1 years ago by Tao370 • updated 4.1 years ago by Alex Reynolds30k
4
votes
3
answers
908
views
6 follow
3
answers
how to replace dot as 'Missing' value for all columns using sed
sed linux written 3.5 years ago by newbiebio80 • updated 3.5 years ago by Jorge Amigo11k
9
votes
3
answers
1.1k
views
3
answers
10
votes
3
answers
1.2k
views
9 follow
3
answers
fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 2.8 years ago by Tmatamatamas0 • updated 2.8 years ago by Paul1.4k
7
votes
3
answers
1.3k
views
5 follow
3
answers
How do I add ">" symbol to FASTA headers?
fasta sed awk written 2.3 years ago by Alec Watanabe60 • updated 2.3 years ago by genomax83k
0
votes
3
answers
3.5k
views
3
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 2.2 years ago by tpaisie70 • updated 24 months ago by h.mon29k
4
votes
3
answers
546
views
3
answers
4
votes
3
answers
101
views
5 follow
3
answers
11
votes
2
answers
4.3k
views
2
answers
filter out fasta File by pattern
fasta regexp pattern sed awk written 5.2 years ago by Assa Yeroslaviz1.3k • updated 5.2 years ago by Matt Shirley9.3k
6
votes
2
answers
1.6k
views
2
answers
How To Add Specific Word To First word in Fasta header
perl sed unix awk written 5.2 years ago by empyrean999170 • updated 5.2 years ago by Frédéric Mahé3.0k
5
votes
2
answers
3.0k
views
2
answers
8
votes
2
answers
2.7k
views
2
answers
rename reads in fastq files
reads fastq lunix sed sequencing written 4.1 years ago by slimane.khayi40 • updated 4.1 years ago by michael.ante3.6k
3
votes
2
answers
1.2k
views
2
answers
Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 3.3 years ago by Kevin D30 • updated 3.3 years ago by 5heikki8.7k
1
vote
2
answers
1.9k
views
2
answers
4
votes
2
answers
1.5k
views
5 follow
2
answers
Extracting accession number from header using sed
accession number sed written 2.7 years ago by ToastedGoat10 • updated 2.7 years ago by genomax83k
7
votes
2
answers
743
views
7 follow
2
answers
5
votes
2
answers
628
views
2
answers
3
votes
2
answers
593
views
5 follow
2
answers
sed regex code help wanted
microbiome regular expressions sed written 21 months ago by bgold040 • updated 21 months ago by RamRS27k
5
votes
2
answers
564
views
2
answers
How to rename duplicate fasta headers after the first underscore '_'?
fasta duplicate header sed awk written 14 months ago by MB20 • updated 14 months ago by Carambakaracho2.2k
7
votes
2
answers
541
views
6 follow
2
answers
6
votes
2
answers
238
views
6 follow
2
answers
Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 12 months ago by camerond150 • updated 12 months ago by shawn.w.foley1.2k
1
vote
2
answers
270
views
2
answers
How to remove all characters after a specific pattern?
linux sed rna-seq awk written 9 months ago by star230 • updated 9 months ago by Jeffin Rockey1.1k
8
votes
2
answers
215
views
7 follow
2
answers
Removing the last part of fasta header in many alignmnet files
fasta loop sed bash written 7 months ago by Badh20 • updated 7 months ago by JC10k
1
vote
2
answers
165
views
2
answers
How to delete last 5 characters off of FASTA header?
fasta header sed written 8 weeks ago by angela10 • updated 8 weeks ago by wm440
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