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33
votes
7
answers
14k
views
15 follow
7
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 5.0 years ago by oliver.bayfield130 • updated 18 months ago by michau30
11
votes
3
answers
6.4k
views
3
answers
Extract data using awk/sed and output to different files
sed shell awk written 4.1 years ago by Tao370 • updated 4.1 years ago by Alex Reynolds30k
11
votes
2
answers
4.3k
views
2
answers
filter out fasta File by pattern
fasta regexp pattern sed awk written 5.2 years ago by Assa Yeroslaviz1.3k • updated 5.2 years ago by Matt Shirley9.3k
11
votes
1
answer
4.3k
views
6 follow
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 3.2 years ago by eoin30 • updated 20 months ago by savscosta0
0
votes
3
answers
3.5k
views
3
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 2.2 years ago by tpaisie70 • updated 24 months ago by h.mon29k
2
votes
1
answer
3.3k
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 2.2 years ago by arsilan32480 • updated 2.2 years ago by Kevin Blighe59k
5
votes
2
answers
3.0k
views
2
answers
8
votes
2
answers
2.7k
views
2
answers
rename reads in fastq files
reads fastq lunix sed sequencing written 4.1 years ago by slimane.khayi40 • updated 4.1 years ago by michael.ante3.6k
7
votes
1
answer
2.6k
views
1
answer
Rename INFO tags in a VCF file
vcf bcftools sed vcftools awk written 4.8 years ago by Sean210
3
votes
1
answer
2.3k
views
1
answer
Modifying fasta header
perl python sed unix awk written 5.8 years ago by empyrean999170 • updated 9 months ago by RamRS27k
5
votes
1
answer
2.0k
views
1
answer
samtools/sed for editing bam file
sed samtools written 3.4 years ago by simo01710
11
votes
1
answer
1.9k
views
7 follow
1
answer
1
vote
2
answers
1.9k
views
2
answers
1
vote
1
answer
1.8k
views
1
answer
Manipulating header (and contents) of a vcf file
vcf sed variants written 4.2 years ago by kirannbishwa011.2k • updated 4.2 years ago by RamRS27k
5
votes
3
answers
1.7k
views
3
answers
how to change the header of input file
fasta file header sed awk written 6.0 years ago by Raghav100 • updated 6.0 years ago by JC10k
6
votes
2
answers
1.6k
views
2
answers
How To Add Specific Word To First word in Fasta header
perl sed unix awk written 5.2 years ago by empyrean999170 • updated 5.2 years ago by Frédéric Mahé3.0k
3
votes
1
answer
1.6k
views
1
answer
6
votes
3
answers
1.5k
views
3
answers
[SOLVED] manipulating text in linux enviroment
pipeline sed file manipulation awk written 6.0 years ago by theodore60 • updated 3.1 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.5k
views
5 follow
1
answer
Changing fasta headers in multifasta file
sed written 2.3 years ago by James20 • updated 2.3 years ago by genomax83k
4
votes
2
answers
1.5k
views
5 follow
2
answers
Extracting accession number from header using sed
accession number sed written 2.7 years ago by ToastedGoat10 • updated 2.7 years ago by genomax83k
2
votes
1
answer
1.5k
views
1
answer
7
votes
3
answers
1.3k
views
5 follow
3
answers
How do I add ">" symbol to FASTA headers?
fasta sed awk written 2.3 years ago by Alec Watanabe60 • updated 2.3 years ago by genomax83k
0
votes
1
answer
1.2k
views
1
answer
Renaming and editing a bed file
bed chip-seq sed awk written 3.3 years ago by Debbie10 • updated 3.3 years ago by Alex Reynolds30k
10
votes
3
answers
1.2k
views
9 follow
3
answers
fasta files: keep only lines containing certain characters + the respective sequences
fasta grep sed written 2.8 years ago by Tmatamatamas0 • updated 2.8 years ago by Paul1.4k
3
votes
2
answers
1.2k
views
2
answers
Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 3.3 years ago by Kevin D30 • updated 3.3 years ago by 5heikki8.7k
9
votes
3
answers
1.1k
views
3
answers
4
votes
3
answers
908
views
6 follow
3
answers
how to replace dot as 'Missing' value for all columns using sed
sed linux written 3.5 years ago by newbiebio80 • updated 3.5 years ago by Jorge Amigo11k
0
votes
0
answers
889
views
0
answers
5
votes
1
answer
876
views
1
answer
awk and sed in bash script and no output
bash sed awk written 18 months ago by bk1140 • updated 18 months ago by Alex Reynolds30k
1
vote
0
answers
862
views
0
answers
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