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Converting a BAM/VCF into genetic recombination map tsv file

--genemap bam/vcf selscan .tsv file format written 28 days ago by taniamahmood38 • 20

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279

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Which max-gap value will be suitable for Bovine 50K SNP chip data in selscan software?

selscan selection signature ihs written 16 months ago by kas • 0

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487

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haplotype phasing related issues

selscan plink beagle written 16 months ago by kas • 0 • updated 16 months ago by ATpoint ♦ 46k

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847

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selscan not outputting ihs

haplotypes vcf selscan written 22 months ago by biosol • 150 • updated 19 months ago by Josué Barrera • 10

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597

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The same loci for XP-EHH by Selscan

xpehh selscan plink written 2.5 years ago by Victor • 10

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886

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How to generate the map file for selscan?

selscan phase plink beagle written 2.6 years ago by Victor • 10

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1.5k

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Selscan error: Variant physical position must be strictly increasing.

selscan map snp written 2.9 years ago by spiral01 • 100

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3.2k

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6 follow

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P-Value calculation from iHS and XP-EHH scores

R selscan statistics ngs selection written 4.1 years ago by SOHAIL • 330 • updated 4.1 years ago by GabrielMontenegro • 570

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7.2k

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How to interpret XPEHH (recent selection) score?

selscan selection written 5.2 years ago by eyb • 210 • updated 5.2 years ago by Giovanni M Dall'Olio ♦ 27k

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Recent Replies

C: How to convert WGS data to microarray format? by cpad0112 ♦ 15k
what's WGS format? In title request is for microarray format and in post, you were talking about ...
C: Get gene symbols from gene ids for mouse using BioMart by tommaso.gastaldi • 0
Hi, how can I align them? which function should I use? how can I then replace them with the exter...
C: Getting 0 bytes or 1 line from galaxy by cpad0112 ♦ 15k
galaxy outputs the logs, for each job. Look at the logs.
C: Use of Two Dual Indexed Adapter by atitparajuli2018 • 0
Yes, why to use dual than single-plexing?
C: Virtual Box of VEP tool for windows by cpad0112 ♦ 15k
Contact the developer of the virtualbox. Post the source of VEP virtual box. In virtual box, you ...
C: fineRADstructure file error by m.giakoumis1 • 0
I'm having this same issue! Did you ever figure out what the error means?
A: R org.Hs.eg.db matching ensembl gene ids with gene symbol by Kevin Blighe ♦ 71k
Another way: build a master table and use that: require(org.Hs.eg.db) keytypes(org.Hs.e...
C: Need help on installing poretools by dreamfeathers08 • 10
Hi Pierre, Thank you for your explanation. It helps in my understanding.
A: BLAST nr database by dxh0222 • 0
That means you open files limit is 256, you can change this limit with this code on terminal, uli...
C: find unique sequences among a set of fasta entries by GenoMax ♦ 96k
`kmercountexact.sh` from BBMap suite can also be used for this. What I am not sure of is how one...
C: find unique sequences among a set of fasta entries by Mensur Dlakic • 9.0k
This may help: - https://github.com/OpenGene/UniqueKMER
A: find unique sequences among a set of fasta entries by Mensur Dlakic • 9.0k
I suggest you try to count k-mers. Pick a decent size, say 31, and find all unique k-mers of that...

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