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Which max-gap value will be suitable for Bovine 50K SNP chip data in selscan software?

selscan selection signature ihs written 12 months ago by kas • 0

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358

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haplotype phasing related issues

selscan plink beagle written 12 months ago by kas • 0 • updated 12 months ago by ATpoint ♦ 40k

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732

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selscan not outputting ihs

haplotypes vcf selscan written 18 months ago by sonia.olaechea • 140 • updated 15 months ago by Josué Barrera • 10

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531

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The same loci for XP-EHH by Selscan

xpehh selscan plink written 2.1 years ago by Victor • 10

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790

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How to generate the map file for selscan?

selscan phase plink beagle written 2.3 years ago by Victor • 10

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1.4k

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Selscan error: Variant physical position must be strictly increasing.

selscan map snp written 2.6 years ago by spiral01 • 100

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3.0k

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6 follow

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P-Value calculation from iHS and XP-EHH scores

R selscan statistics ngs selection written 3.8 years ago by SOHAIL • 310 • updated 3.8 years ago by GabrielMontenegro • 560

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6.5k

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How to interpret XPEHH (recent selection) score?

selscan selection written 4.9 years ago by eyb • 190 • updated 4.9 years ago by Giovanni M Dall'Olio ♦ 27k

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Recent Replies

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yes i tried with k31 and k51 and chose k51 because it gave higher contigs compared to k31. but in...
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Sorry. I will pay more attention to this the next time. I have solved this problem. Thank you any...
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If you have the reference then `mutate.sh` from BBMap suite can introduce mutations that you cont...
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Make sure the order of channels is as follows. conda config --add channels defaults con...
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hi, Work on copy or have a look at data versioning systems like pins (R package) ... best A
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Since I often land on this answer (by the will of Google), whenever I look through my colleague's...
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All these Blast2GO features and more are now available via OmicsBox from https://www.biobam.com/o...
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Thanks for the trick. awk has worked for me.
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Try: $ awk '$0 ~ /^>16S_rRNA/ {getline seq; print $0,seq}' test.fa $ sed -n '/^>16...
C: Looping over list in R by rodolfo.peacewalker • 0
rpolicastro, thanks for your help. The map function worked well! Now I have an issue related with...

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