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Recent Replies
Comment: How to access the ACLAME server?
by
GenoMax
115k
This appears to be a 10+ year old paper and as with many of these services it may be dead. Are you certain it was available recently?
Answer: How can I find a DNA sequence that codes for a protein from a large FASTQ file?
by
GenoMax
115k
I will add one more idea. Once you get the DNA sequence of the protein you are looking for you can align (using a NGS data aligner) the rea…
Answer: How to regress out age and sex using limma removeBatchEffect
by
linnaeusbundalian
•
0
afaik, limma::removeBatchEffect can accept two batches i.e specifying batch = (first batch) and batch2 = (second batch)
Answer: How can I find a DNA sequence that codes for a protein from a large FASTQ file?
by
Mensur Dlakic
★
18k
I think most people on this forum will tell you that you should solve your homeworks independently. That is the whole point of learning, an…
Comment: How to add the ancestral allele (AA) information in a vcf file?
by
Pierre Lindenbaum
145k
no, unless you have file similar to http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/supporting/ancestral_alignments/
Comment: How to add the ancestral allele (AA) information in a vcf file?
by
taniamahmood38
▴
20
Thanks for the help. But please kindly clarify that if the vcfancestralallele command will work on any specie vcf file other than human?
…
Comment: Lasso regression and cross-validation on RNA seq dataset
by
Mensur Dlakic
★
18k
Yes, the idea is to perform CV on a train dataset and evaluate on test. For this to be reliable, some kind of a stratified split is needed …
Comment: Automatic rename of filenames with bash script
by
cpad0112
20k
How I do it if i want modifiy all files in a folder? A . instead of .txt or a simple ``?
instead of `for filename in *.fasta`, you can…
Comment: Automatic rename of filenames with bash script
by
Morta
•
0
Ok. Thanks is now working with txt files with the word *.txt instead of *.fasta!
Answer: Automatic rename of filenames with bash script
by
Pierre Lindenbaum
145k
ah yes sorry, that was the output , not my script. OK the message in german is clear. There is no file with the suffix *.fasta in the direc…
Comment: Automatic rename of filenames with bash script
by
Morta
•
0
I posted only the output of the script.
I copied one to one your new script.
Comment: Automatic rename of filenames with bash script
by
Pierre Lindenbaum
145k
I wrote
ls -lah "${filename}"
not
ls -lah '${filename}'
Comment: Automatic rename of filenames with bash script
by
Morta
•
0
I did with rename but I was curious about how I do with this bashscript. I try to understand the error of the script for what I want to do.
Comment: Automatic rename of filenames with bash script
by
cpad0112
20k
what are you trying to do? You do not need a loop here. Use rename.
Comment: Automatic rename of filenames with bash script
by
Morta
•
0
1. Ok. I know is risky!
2. Yes
I replaced *.fasta with *.txt now it's editing all files with ending *.txt.
I wasn't clear that the code…
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