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53
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Is there a perfect WGS dataset?
next-gen sequence written 3 hours ago by marongiu.luigi • 190 • updated 3 hours ago by Pierre Lindenbaum ♦ 108k
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78
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What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence alignment dna written 22 hours ago by beausoleilmo • 190
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97
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How to improve single-cells data ?
genome assembly next-gen sequence written 1 day ago by darbinator • 0
0
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1
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63
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1
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Find all sequence of a specific genus amplified by a couple of primers
alignment sequence primer pcr written 1 day ago by Shred • 60
3
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105
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filter_fasta.py not removing sequences from fastq based on read IDs
sequencing fastq sequence qiime written 1 day ago by fjs5035 • 0 • updated 1 day ago by Vijay Lakhujani ♦ 2.5k
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39
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Codeml file and output
genome alignment sequence written 2 days ago by Mehmet • 370
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59
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Coverage variance and mean coverage
sequence coverage tool written 2 days ago by ash • 10 • updated 2 days ago by finswimmer ♦ 2.8k
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1
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82
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1
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have trouble to upload data to washU browser
sequence chip-seq written 2 days ago by mikysyc2016 • 10 • updated 2 days ago by jared.andrews07 • 730
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1
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62
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1
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Sequence Length Distribution after trimmomatic
next-gen sequence written 3 days ago by marongiu.luigi • 190
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55
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Downloading NCBI data with geographic location tag
genome gene sequence ncbi downloading data written 3 days ago by Willian Klassen de Oliveira • 0
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2
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94
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2
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Remove extra sequences without unique names from fasta
fasta duplicates sequence uniq bash written 4 days ago by nmkn • 0 • updated 4 days ago by Pierre Lindenbaum ♦ 108k
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2
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121
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2
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Simple visual output of Pairwise Sequence alignment
pairwise python alignment visualisation sequence written 10 days ago by chelseakarasawyer • 0
3
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2
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104
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2
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How to get plasmid or costruct sequence from fastq file in c.elegans Whole-genome Sequencing?
R sequence sequencing written 4 days ago by giovannaventola3es9 • 0 • updated 4 days ago by jrj.healey • 4.6k
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2
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61
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5 follow
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The fastest protein sequence aligner available
sequence alignment protein written 4 days ago by Bioaln • 260 • updated 4 days ago by Vijay Lakhujani ♦ 2.5k
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1
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94
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Blastn Gives Different Results Based on Database Size
alignment sequence blast written 4 days ago by khv • 0 • updated 4 days ago by lieven.sterck • 1.7k
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drawing comparison gene maps between strains- synterny diagrams
gene software error sequence written 3.4 years ago by mwanerhi erfgtr • 30 • updated 4 days ago by Biostar ♦♦ 20
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1
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93
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1
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Assembling a sequence from the pairs of letters (X,Y)
R sequence written 5 days ago by Bogdan • 510 • updated 5 days ago by zx8754 ♦ 4.5k
1
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1
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554
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1
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how to get read density for the first 1000 nt of each transcript
sequence next-gen rna-seq written 23 months ago by Sara • 20 • updated 5 days ago by Devon Ryan ♦ 81k
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174
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5 follow
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grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 7 days ago by benoit.kunath • 10
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100
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6 follow
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What sequencing read aligners other than RazerS guarantee full sensitivity?
alignment sequence written 9 days ago by adam.nunn • 0
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88
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help to generate 100% Stacked Bar Chart or a histogram
gene R sequence written 10 days ago by kamel • 0
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1
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97
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1
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are all gff file provided by NCBI clearly annotated with gene and protein sequence start and end information?
genome assembly sequence gene written 11 days ago by Yingzi Zhang • 0 • updated 9 days ago by Carambakaracho • 270
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94
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bwa mem -T (alignment score) not doing anything
genome sequence snp written 9 days ago by chris.bird • 0
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1
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84
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1
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Subset reads from bam file
alignment sequence rna-seq written 10 days ago by fabio.demartino2 • 0 • updated 10 days ago by h.mon ♦ 15k
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84
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Formal definition of protein sequence similarity
similarity sequence alignment written 10 days ago by backpropaganda • 0
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1
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104
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1
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Samtools mpileup taking a long time to finish
genome assembly sequence alignment written 11 days ago by williamsbrian5064 • 80 • updated 11 days ago by ATpoint • 4.4k
3
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2
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110
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5 follow
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Identifying CNVs from targeted amplicon sequencing
ngs sequence amplicon sequencing written 22 days ago by kvn95ss • 0 • updated 11 days ago by mkulecka • 300
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49
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Interpreting dnadiff output
genome sequence alignment written 11 days ago by 112498262 • 0
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125
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0
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Compare nucleotides across aligned sequences
identity similarity sequence biopython alignment written 11 days ago by brimaloney • 0 • updated 11 days ago by zx8754 ♦ 4.5k
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178
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8 follow
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Split sequence according the 'N' base
sequence written 11 days ago by Alex • 20 • updated 11 days ago by cpad0112 ♦ 6.3k
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