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4
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Tool: SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta bioinformatics java sequences tool written 10 months ago by Hugo • 290
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Which computational tool should I use to remove eukaryotic sequences from my sample (created with RNA-seq and Shotgun Metagenomics and Illumina)?
shotgun-metagenomics eukaryotic sequences mg-rast written 5.2 years ago by BioNtE • 0 • updated 3 months ago by csidhu • 0
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1
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149
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1
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GO enrichment through protein sequences
enrichment sequences tool go proteomic written 3 months ago by anna • 10
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3
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233
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3
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Split multi-fasta file into smaller files using R
fasta R multi-fasta sequences blastn written 3 months ago by slushverte01 • 0 • updated 3 months ago by Juke34 • 4.8k
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391
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For loop to multiple fasta files using TrimAL
loop trimal sequences written 9 months ago by leticia.baldassio • 0 • updated 9 months ago by genomax ♦ 91k
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How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 3.4 years ago by seta • 1.4k • updated 13 months ago by Juke34 • 4.8k
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1
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HTTP 400: Bad request error in Biopython Entrez.efetch
ncbi python biopython entrez sequences written 16 months ago by Solowars • 50
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1
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how to create a fasta file with subset of sequences using seqinr
seqin R sequences fasta written 21 months ago by Camilla • 10 • updated 17 months ago by Biostar ♦♦ 20
0
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435
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Finding a suitable Independent Variable for a Protein sequence homology analysis
homology sequences blast sequence homology written 20 months ago by minasmayth • 0 • updated 20 months ago by Biostar ♦♦ 20
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481
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Performing a dn/ds analysis on cancer genes
dn/ds tcga sequences snp cancer written 21 months ago by mariamcurbelo2061 • 0
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5 follow
1
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How to download all premRNA sequences (exons + introns) for human GRCh38 with Ensembl IDs?
ensembl database rna-seq human sequences written 22 months ago by O.rka • 210 • updated 22 months ago by Biostar ♦♦ 20
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Primer-blast impossible with multiple sequences ?
sequences primer-blast written 23 months ago by Picasa • 560 • updated 23 months ago by Biostar ♦♦ 20
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Meme-chip: How do I make my input sequences all the same length?
meme-chip meme sequences written 23 months ago by kdc15 • 40 • updated 23 months ago by Alex Reynolds ♦ 31k
1
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How to convert MEME MOTIF to all potential sequences?
rna meme motif sequences written 2.0 years ago by Oo • 0 • updated 2.0 years ago by jared.andrews07 ♦ 7.5k
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remove dubplicate from ensemble seqeunce?
ensembl sequences written 3.8 years ago by najibveto • 40 • updated 2.1 years ago by zx8754 ♦ 9.7k
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1
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1.8k
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1
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BioPython BLAST Records HSP Sequences
ncbi biopython blast sequences written 2.4 years ago by samvanstroud • 0 • updated 2.3 years ago by Gungor Budak • 250
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1
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505
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1
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how to retrieve sequences from genome
genome sequences written 2.5 years ago by bisht20diksha • 20 • updated 2.5 years ago by WouterDeCoster ♦ 44k
7
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1
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667
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1
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How does Burrows-Wheeler Transformation work on genetic sequences?
burrows-wheeler transform sequences compression written 2.6 years ago by gregoryhuang2005 • 10 • updated 2.6 years ago by kloetzl • 1.1k
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1.5k
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How to divide FASTA file?
fasta sequences written 2.8 years ago by l.souza • 70 • updated 2.8 years ago by genomax ♦ 91k
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717
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Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
fasta filter blast leismania sequences written 2.9 years ago by dzisis1986 • 20 • updated 2.8 years ago by Biostar ♦♦ 20
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Aligning short sequences to fastq
short aligning sequences rna-seq written 3.1 years ago by BPors • 40
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How to download all transcripts from Mouse with exons as upper case and introns as lower case?
genome mouse database sequences rna-seq written 3.1 years ago by O.rka • 210
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2.2k
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1
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Why to delete gaps in alignments to phylogeny?
phylogeny gaps sequences written 3.2 years ago by l.souza • 70 • updated 3.2 years ago by Jean-Karim Heriche ♦ 23k
5
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2.4k
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5 follow
2
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Nucleotide statistics for fasta sequences
sequences written 3.2 years ago by l.souza • 70 • updated 3.2 years ago by genomax ♦ 91k
3
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2
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1.1k
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2
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How many sequences to phylogeny?
phylogeny outgroup sequences written 3.2 years ago by l.souza • 70 • updated 3.2 years ago by Joe ♦ 18k
5
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952
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6 follow
1
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Software for cleaning FASTA files
cleaning alignment sequences written 3.3 years ago by l.souza • 70
7
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1
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824
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6 follow
1
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Phylogeny Analysis Data
phylogeny data amino acids sequences dna written 3.4 years ago by l.souza • 70 • updated 3.4 years ago by genebow • 160
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Merging FASTA files
fasta sequences written 3.4 years ago by l.souza • 70 • updated 3.4 years ago by finswimmer ♦ 13k
5
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1
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942
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1
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Big Data Translation
genome proteome translation sequences dna written 3.4 years ago by l.souza • 70 • updated 3.4 years ago by genomax ♦ 91k
0
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0
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644
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0
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Specified Sequence of a probe
probes human bead chip 450k array sequences written 3.5 years ago by niutster • 100
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