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3
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64
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Clustering sequences with low identity
sequences clustering written 3 days ago by agata88 • 810 • updated 3 days ago by Mensur Dlakic • 9.0k
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65
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Finding assembled transcript sequences from StringTie output
stringtie assembled transcripts sequences rna-seq written 4 days ago by Jen • 0
9
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4
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11 follow
4
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How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 3.8 years ago by seta • 1.4k • updated 27 days ago by DNAvinci • 0
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342
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Choosing random set of 500 fasta files from a folder containing large amount of fasta files in python or jupyter notebook
fasta files list sequences random written 6 weeks ago by Fadhalsh441 • 0
9
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3
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3
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Tool: SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta bioinformatics java sequences tool written 14 months ago by Hugo • 340
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241
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Similarity matrix to distance matrix for protein sequences
similarity protein sequences distance R written 3 months ago by kbaitsi • 0
0
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1
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2.1k
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1
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Which computational tool should I use to remove eukaryotic sequences from my sample (created with RNA-seq and Shotgun Metagenomics and Illumina)?
shotgun-metagenomics eukaryotic sequences mg-rast written 5.6 years ago by BioNtE • 0 • updated 7 months ago by csidhu • 0
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257
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1
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GO enrichment through protein sequences
enrichment sequences tool go proteomic written 7 months ago by anna • 10
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3
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441
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3
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Split multi-fasta file into smaller files using R
fasta R multi-fasta sequences blastn written 8 months ago by slushverte01 • 0 • updated 8 months ago by Juke34 • 5.1k
0
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1
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548
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1
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For loop to multiple fasta files using TrimAL
loop trimal sequences written 14 months ago by leticia.baldassio • 0 • updated 14 months ago by GenoMax ♦ 96k
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1
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1.6k
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1
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HTTP 400: Bad request error in Biopython Entrez.efetch
ncbi python biopython entrez sequences written 20 months ago by Solowars • 60
3
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1
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2.7k
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1
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how to create a fasta file with subset of sequences using seqinr
seqin R sequences fasta written 2.1 years ago by Camilla • 10 • updated 21 months ago by Biostar ♦♦ 20
0
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487
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Finding a suitable Independent Variable for a Protein sequence homology analysis
homology sequences blast sequence homology written 2.0 years ago by minasmayth • 0 • updated 24 months ago by Biostar ♦♦ 20
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552
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Performing a dn/ds analysis on cancer genes
dn/ds tcga sequences snp cancer written 2.2 years ago by mariamcurbelo2061 • 0
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5 follow
1
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How to download all premRNA sequences (exons + introns) for human GRCh38 with Ensembl IDs?
ensembl database rna-seq human sequences written 2.2 years ago by O.rka • 240 • updated 2.2 years ago by Biostar ♦♦ 20
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Primer-blast impossible with multiple sequences ?
sequences primer-blast written 2.3 years ago by Picasa • 590 • updated 2.2 years ago by Biostar ♦♦ 20
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1
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Meme-chip: How do I make my input sequences all the same length?
meme-chip meme sequences written 2.2 years ago by kdc15 • 40 • updated 2.2 years ago by Alex Reynolds ♦ 31k
1
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1
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679
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How to convert MEME MOTIF to all potential sequences?
rna meme motif sequences written 2.4 years ago by Oo • 0 • updated 2.4 years ago by jared.andrews07 ♦ 8.6k
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1
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1
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remove dubplicate from ensemble seqeunce?
ensembl sequences written 4.2 years ago by najibveto • 40 • updated 2.4 years ago by zx8754 ♦ 9.9k
3
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1
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1
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BioPython BLAST Records HSP Sequences
ncbi biopython blast sequences written 2.7 years ago by samvanstroud • 0 • updated 2.7 years ago by Gungor Budak • 250
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559
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how to retrieve sequences from genome
genome sequences written 2.9 years ago by bisht20diksha • 20 • updated 2.9 years ago by WouterDeCoster ♦ 45k
7
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1
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739
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1
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How does Burrows-Wheeler Transformation work on genetic sequences?
burrows-wheeler transform sequences compression written 2.9 years ago by gregoryhuang2005 • 10 • updated 2.9 years ago by kloetzl • 1.1k
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1.7k
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How to divide FASTA file?
fasta sequences written 3.1 years ago by l.souza • 70 • updated 3.1 years ago by GenoMax ♦ 96k
0
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761
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Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
fasta filter blast leismania sequences written 3.3 years ago by dzisis1986 • 20 • updated 3.1 years ago by Biostar ♦♦ 20
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Aligning short sequences to fastq
short aligning sequences rna-seq written 3.5 years ago by BPors • 40
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How to download all transcripts from Mouse with exons as upper case and introns as lower case?
genome mouse database sequences rna-seq written 3.5 years ago by O.rka • 240
2
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1
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Why to delete gaps in alignments to phylogeny?
phylogeny gaps sequences written 3.6 years ago by l.souza • 70 • updated 3.6 years ago by Jean-Karim Heriche ♦ 24k
5
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2.7k
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5 follow
2
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Nucleotide statistics for fasta sequences
sequences written 3.6 years ago by l.souza • 70 • updated 3.6 years ago by GenoMax ♦ 96k
3
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2
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2
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How many sequences to phylogeny?
phylogeny outgroup sequences written 3.6 years ago by l.souza • 70 • updated 3.6 years ago by Joe ♦ 18k
5
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1
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997
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6 follow
1
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Software for cleaning FASTA files
cleaning alignment sequences written 3.7 years ago by l.souza • 70
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