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In RNA Seq, How does the AT content help us to know if the data is contaminated ?
at-content rna-seq sequencing written 7 hours ago by Inquisitive8995 • 20 • updated 4 hours ago by Charles Warden ♦ 5.2k
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TCGA germline and somatic snvs
harmonized legacy tcga snv sequencing written 13 hours ago by susibing • 0 • updated 10 hours ago by Kevin Blighe ♦ 28k
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856
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1
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reporting the best alignment(s) only in pairwise2
next-gen alignment sequencing written 3.3 years ago by sumithrasank75 • 90 • updated 10 hours ago by ingridaolendraite • 0
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News: Course: eDNA Metabarcoding in Canada
R news next-gen sequencing written 17 hours ago by carlopecoraro2 • 760
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Trying to use meshclust in windows
next-gen sequencing written 1 day ago by anasofiamoreira94 • 30 • updated 1 day ago by genomax ♦ 55k
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53
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Functional Score Annotation Bacteria (VCF)
genome sift bacteria snp sequencing written 2 days ago by campero189 • 20
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135
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NtSeq Visualization or Viewer
alignment sequencing written 12 days ago by surya.yadav • 0 • updated 3 days ago by Biostar ♦♦ 20
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2
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2
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RNA seq results as fpkm
fpkm rna-seq sequencing written 2.6 years ago by charbel.feghaly • 10 • updated 4 days ago by Ram ♦ 17k
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1
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556
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Removing reads from fastq file based on position
latest next-gen rna-seq sequencing written 2.6 years ago by rmf • 340 • updated 4 days ago by Ram ♦ 17k
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Can RNA-Seq be Used to Predict Non-Synonymous Mutational Load in a Non-Matched Surgical Tumor Sample?
genome gene next-gen rna-seq sequencing written 2.6 years ago by G4G • 0 • updated 4 days ago by Ram ♦ 17k
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Obtaining phased haplotype data
next-gen haplotype sequencing written 2.6 years ago by kshitijtayal • 30 • updated 4 days ago by Ram ♦ 17k
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1
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141
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STAR alignment results in large chunks of NNNNNs
alignment rna-seq sequencing written 20 days ago by Marks • 40 • updated 6 days ago by Biostar ♦♦ 20
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1
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1
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Distinguish Single Cell DNA Sequencing: Human vs Mouse
single cell sequencing sequencing written 6 days ago by Chris_AI • 30 • updated 6 days ago by h.mon ♦ 19k
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How to use Snakemake with tools which don't have clearly defined output options for files?
next-gen pipeline snakemake sequencing written 6 days ago by Artem Kiselev • 20 • updated 6 days ago by WouterDeCoster ♦ 32k
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194
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seqtk subseq command not pulling full fastq reads
next-gen sequencing written 26 days ago by kratnasiri • 0 • updated 6 days ago by Biostar ♦♦ 20
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1
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5 follow
1
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mm9 RNA-seq reference genome
gene tutorial alignment rna-seq sequencing written 7 days ago by mikysyc2016 • 20 • updated 6 days ago by Kevin Blighe ♦ 28k
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3
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3
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Tumor clonality algorithms
ngs snp sequencing written 3.2 years ago by kezcleal • 120 • updated 6 days ago by sm.hashemin • 60
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What type of File is this? groHMM tutorial input says bam but it doesn't look bam
gro-seq next-gen sequencing written 7 days ago by simonalsager • 0 • updated 7 days ago by Pierre Lindenbaum ♦ 112k
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How to launch dextractor properly
sequencing written 7 days ago by susan.tulp • 0
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276
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1
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How to create a nexus file for BEAST ?
alignment sequencing written 3 months ago by lokraj2003 • 30 • updated 8 days ago by zhuofei.xu • 0
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1
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Discrepancy between Nextera PE illumina produced sequence vs Sanger sequence of same sample??!!
genome assembly next-gen gene sequencing written 8 days ago by zayed.saud • 0 • updated 8 days ago by swbarnes2 ♦ 4.0k
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2
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6 follow
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Error while downloading data from database[EGA]
next-gen sequencing written 6 months ago by banerjeeshayantan • 70 • updated 8 days ago by miaowzai • 70
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90
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Troubleshooting assembly contigs of large genome
genome assembly alignment sequencing written 8 days ago by arunprasanna83 • 30
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70
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GBS or RAD?
genome snp sequencing written 8 days ago by mahnazkiani • 40
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70
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Uneven amount of total sequences across individuals in RAD-seq dataset
next-gen sequencing written 8 days ago by CaffeSospeso • 0
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2
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151
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2
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Plotting SNP density heatmap chromosome ideogram
genome snp sequencing written 9 days ago by r.e.joynson • 0 • updated 9 days ago by Ram ♦ 17k
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1
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1
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Pysam Parses Certain Read Pairs Out Of Order?
python next-gen samtools sam sequencing written 8.2 years ago by User 9996 • 770 • updated 9 days ago by Ram ♦ 17k
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4
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5 follow
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Indel Detection For 454 Resequencing
indel next-gen sequencing written 8.2 years ago by Daniel Swan ♦ 13k • updated 9 days ago by Ram ♦ 17k
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6 follow
1
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Gene Set(S) For Gene Predictor Training
gene next-gen sequencing written 8.2 years ago by Darked89 ♦ 4.2k • updated 9 days ago by Ram ♦ 17k
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1
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Bwa: Number Of Threads
next-gen parallel bwa hardware sequencing written 8.3 years ago by Pierre Lindenbaum ♦ 112k • updated 10 days ago by Ram ♦ 17k
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