Showing: sequencingreset
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242
votes
11
answers
25k
views
166 follow
11
answers
231
votes
15
answers
62k
views
77 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 9.0 years ago by Biomed4.5k • updated 4.3 years ago by Barry40
240
votes
11
answers
138k
views
113 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 8.3 years ago by Biomed4.5k • updated 9 months ago by WouterDeCoster39k
179
votes
16
answers
13k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 8.6 years ago by Pierre Lindenbaum120k • updated 5.8 years ago by sarahhunter600
105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.0 years ago by Matthieu430 • updated 3.2 years ago by alexisdereeper30
96
votes
8
answers
25k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 5.6 years ago by Biostar ♦♦ 20
158
votes
15
answers
40k
views
46 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 7.9 years ago by Panos1.7k • updated 4.7 years ago by bstrs0
39
votes
2
answers
14k
views
40 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 6.7 years ago by Istvan Albert ♦♦ 80k • updated 3.1 years ago by pengchy410
65
votes
8
answers
26k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.0 years ago by brentp23k • updated 3.7 years ago by Malachi Griffith17k
61
votes
6
answers
8.8k
views
25 follow
6
answers
63
votes
8
answers
19k
views
31 follow
8
answers
58
votes
18
answers
20k
views
35 follow
18
answers
51
votes
6
answers
23k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 8.5 years ago by Bio_X2Y3.7k • updated 3.2 years ago by Biostar ♦♦ 20
125
votes
6
answers
126k
views
29 follow
6
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 2.7 years ago by jokipokemon00010
70
votes
5
answers
31k
views
17 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 8.1 years ago by Ketil3.9k
94
votes
15
answers
31k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.8 years ago by User 1586280 • updated 12 months ago by endrebak760
57
votes
4
answers
3.7k
views
9 follow
4
answers
45
votes
6
answers
9.8k
views
37 follow
6
answers
93
votes
5
answers
46k
views
27 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.3 years ago by Pierre Lindenbaum120k • updated 2.1 years ago by martin.triska110
33
votes
5
answers
5.0k
views
13 follow
5
answers
Short Read Aligners/ Snp Calling Comparison
sequencing next-gen mapping snp comparison written 8.6 years ago by Pierre Lindenbaum120k • updated 5.4 years ago by Biostar ♦♦ 20
97
votes
16
answers
32k
views
51 follow
16
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.0 years ago by KS360 • updated 5 months ago by Shixiang30
81
votes
6
answers
46k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.9 years ago by krithika.gu250 • updated 10 months ago by Fred073060
32
votes
6
answers
5.3k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 2.9 years ago by Mike1.3k • updated 14 months ago by Biostar ♦♦ 20
33
votes
6
answers
24k
views
18 follow
6
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 8.5 years ago by Stew1.4k • updated 5.1 years ago by Alex Reynolds28k
22
votes
4
answers
3.2k
views
6 follow
4
answers
31
votes
2
answers
3.4k
views
23 follow
2
answers
37
votes
2
answers
3.0k
views
10 follow
2
answers
32
votes
2
answers
14k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 2.3 years ago by Friederike4.2k • updated 2.3 years ago by Charles Plessy2.7k
28
votes
3
answers
3.9k
views
5 follow
3
answers
Comprehensive Intro To Next Generation Sequencing
illumina next-gen solid sequencing written 8.7 years ago by bow790 • updated 8.7 years ago by Alastair Kerr5.2k
26
votes
7
answers
17k
views
9 follow
7
answers
How To Best Deal With Adapter Contamination (Illumina)?
next-gen adaptor sequencing written 8.5 years ago by Gaffa490 • updated 8.3 years ago by Rna-Seq0
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