Showing: sequencingreset
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249
votes
11
answers
28k
views
172 follow
11
answers
231
votes
15
answers
63k
views
77 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 9.5 years ago by Biomed4.6k • updated 4.8 years ago by Barry40
253
votes
11
answers
148k
views
119 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 8.9 years ago by Biomed4.6k • updated 16 months ago by WouterDeCoster42k
179
votes
16
answers
13k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 9.1 years ago by Pierre Lindenbaum124k • updated 6.4 years ago by sarahhunter600
105
votes
8
answers
40k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.6 years ago by Matthieu430 • updated 3.7 years ago by alexisdereeper30
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 9.7 years ago by Pierre Lindenbaum124k • updated 6.1 years ago by Biostar ♦♦ 20
160
votes
15
answers
42k
views
46 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 8.4 years ago by Panos1.7k • updated 5.3 years ago by bstrs0
40
votes
2
answers
15k
views
40 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 7.3 years ago by Istvan Albert ♦♦ 81k • updated 3.7 years ago by pengchy410
65
votes
8
answers
27k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.6 years ago by brentp23k • updated 4.3 years ago by Malachi Griffith18k
61
votes
6
answers
9.0k
views
25 follow
6
answers
63
votes
8
answers
19k
views
31 follow
8
answers
58
votes
18
answers
21k
views
35 follow
18
answers
51
votes
6
answers
24k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 9.1 years ago by Bio_X2Y3.7k • updated 3.7 years ago by Biostar ♦♦ 20
125
votes
7
answers
131k
views
30 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 9.7 years ago by Pierre Lindenbaum124k • updated 17 days ago by Renesh1.8k
70
votes
5
answers
31k
views
17 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 9.6 years ago by Pierre Lindenbaum124k • updated 8.7 years ago by Ketil4.0k
94
votes
15
answers
32k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.3 years ago by User 1586280 • updated 18 months ago by endrebak800
57
votes
4
answers
3.9k
views
9 follow
4
answers
45
votes
6
answers
11k
views
37 follow
6
answers
95
votes
5
answers
48k
views
27 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.9 years ago by Pierre Lindenbaum124k • updated 2.7 years ago by martin.triska110
33
votes
5
answers
5.2k
views
13 follow
5
answers
Short Read Aligners/ Snp Calling Comparison
sequencing next-gen mapping snp comparison written 9.1 years ago by Pierre Lindenbaum124k • updated 6.0 years ago by Biostar ♦♦ 20
98
votes
17
answers
33k
views
51 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.5 years ago by KS360 • updated 11 months ago by Shixiang40
83
votes
6
answers
52k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 5.5 years ago by krithika.gu260 • updated 17 months ago by Fred073060
32
votes
6
answers
6.0k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 3.5 years ago by Mike1.4k • updated 20 months ago by Biostar ♦♦ 20
33
votes
6
answers
25k
views
18 follow
6
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 9.1 years ago by Stew1.4k • updated 5.6 years ago by Alex Reynolds29k
22
votes
4
answers
3.4k
views
6 follow
4
answers
31
votes
2
answers
3.7k
views
23 follow
2
answers
109
votes
5
answers
115k
views
23 follow
5
answers
How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 9.4 years ago by Biomed4.6k • updated 6.1 years ago by Chris Miller21k
37
votes
2
answers
3.1k
views
10 follow
2
answers
34
votes
6
answers
15k
views
23 follow
6
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 7.1 years ago by Abhi1.5k • updated 9 months ago by sabaghianamir7010
33
votes
2
answers
16k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 2.9 years ago by Friederike5.2k • updated 2.9 years ago by Charles Plessy2.7k
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