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270
votes
11
answers
33k
views
192 follow
11
answers
232
votes
15
answers
65k
views
78 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 10.5 years ago by Biomed4.7k • updated 5.8 years ago by Barry40
279
votes
11
answers
165k
views
126 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 9.9 years ago by Biomed4.7k • updated 2.3 years ago by WouterDeCoster44k
179
votes
16
answers
14k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 10.1 years ago by Pierre Lindenbaum131k • updated 7.4 years ago by sarahhunter600
109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.6 years ago by Matthieu460 • updated 4.7 years ago by alexisdereeper30
42
votes
2
answers
16k
views
42 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 8.3 years ago by Istvan Albert ♦♦ 86k • updated 4.6 years ago by pengchy430
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 7.1 years ago by Biostar ♦♦ 20
161
votes
15
answers
46k
views
47 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 9.4 years ago by Panos1.7k • updated 6.2 years ago by bstrs0
66
votes
8
answers
28k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.6 years ago by brentp23k • updated 5.3 years ago by Malachi Griffith18k
61
votes
6
answers
9.3k
views
25 follow
6
answers
60
votes
18
answers
22k
views
37 follow
18
answers
63
votes
8
answers
20k
views
31 follow
8
answers
132
votes
7
answers
141k
views
32 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 12 months ago by Renesh1.9k
51
votes
6
answers
24k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 10.1 years ago by Bio_X2Y3.9k • updated 4.7 years ago by Biostar ♦♦ 20
72
votes
5
answers
32k
views
18 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 10.6 years ago by Pierre Lindenbaum131k • updated 9.6 years ago by Ketil4.0k
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.3 years ago by User 1586280 • updated 2.5 years ago by endrebak840
57
votes
4
answers
4.1k
views
9 follow
4
answers
48
votes
6
answers
12k
views
39 follow
6
answers
90
votes
7
answers
60k
views
58 follow
7
answers
98
votes
5
answers
52k
views
28 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 9.8 years ago by Pierre Lindenbaum131k • updated 3.7 years ago by martin.triska130
100
votes
17
answers
35k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.5 years ago by KS370 • updated 23 months ago by Shixiang70
35
votes
6
answers
7.1k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 4.4 years ago by Mike1.6k • updated 2.7 years ago by Biostar ♦♦ 20
33
votes
5
answers
5.4k
views
13 follow
5
answers
Short Read Aligners/ Snp Calling Comparison
sequencing next-gen mapping snp comparison written 10.1 years ago by Pierre Lindenbaum131k • updated 7.0 years ago by Biostar ♦♦ 20
33
votes
5
answers
27k
views
18 follow
5
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 10.1 years ago by Stew1.4k • updated 6.6 years ago by Alex Reynolds31k
22
votes
4
answers
3.6k
views
6 follow
4
answers
31
votes
2
answers
4.4k
views
23 follow
2
answers
110
votes
5
answers
125k
views
23 follow
5
answers
How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 10.4 years ago by Biomed4.7k • updated 7.1 years ago by Chris Miller21k
37
votes
2
answers
3.3k
views
10 follow
2
answers
34
votes
6
answers
16k
views
23 follow
6
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 8.1 years ago by Abhi1.5k • updated 21 months ago by sabaghianamir7010
34
votes
2
answers
17k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 3.9 years ago by Friederike6.5k • updated 3.9 years ago by Charles Plessy2.7k
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