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270
votes
11
answers
33k
views
192 follow
11
answers
279
votes
11
answers
165k
views
126 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 9.9 years ago by Biomed4.7k • updated 2.3 years ago by WouterDeCoster44k
232
votes
15
answers
65k
views
78 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 10.5 years ago by Biomed4.7k • updated 5.8 years ago by Barry40
90
votes
7
answers
60k
views
58 follow
7
answers
109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.6 years ago by Matthieu460 • updated 4.7 years ago by alexisdereeper30
100
votes
17
answers
35k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.5 years ago by KS370 • updated 23 months ago by Shixiang70
161
votes
15
answers
46k
views
47 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 9.4 years ago by Panos1.7k • updated 6.2 years ago by bstrs0
42
votes
2
answers
16k
views
42 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 8.3 years ago by Istvan Albert ♦♦ 86k • updated 4.6 years ago by pengchy430
48
votes
6
answers
12k
views
39 follow
6
answers
152
votes
11
answers
5.5k
views
37 follow
11
answers
Picking A Programming Language And Where To Begin
programming next-gen C subjective sequencing written 9.3 years ago by Travis2.8k • updated 8.8 years ago by Palani Kannan60
60
votes
18
answers
22k
views
37 follow
18
answers
132
votes
7
answers
141k
views
32 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 12 months ago by Renesh1.9k
57
votes
6
answers
43k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 8.9 years ago by Ric160 • updated 8.9 years ago by Ketil4.0k
63
votes
8
answers
20k
views
31 follow
8
answers
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 7.1 years ago by Biostar ♦♦ 20
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.3 years ago by User 1586280 • updated 2.5 years ago by endrebak840
98
votes
5
answers
52k
views
28 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 9.8 years ago by Pierre Lindenbaum131k • updated 3.7 years ago by martin.triska130
58
votes
8
answers
22k
views
27 follow
8
answers
66
votes
8
answers
28k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.6 years ago by brentp23k • updated 5.3 years ago by Malachi Griffith18k
62
votes
7
answers
17k
views
26 follow
7
answers
179
votes
16
answers
14k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 10.1 years ago by Pierre Lindenbaum131k • updated 7.4 years ago by sarahhunter600
61
votes
6
answers
9.3k
views
25 follow
6
answers
21
votes
5
answers
7.7k
views
25 follow
5
answers
42
votes
3
answers
16k
views
24 follow
3
answers
The Difference Between Directional And Nondirectional Sequencing
non rna sequencing written 8.9 years ago by Assa Yeroslaviz1.4k • updated 2.4 years ago by julianasrinjuli0
110
votes
5
answers
125k
views
23 follow
5
answers
How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 10.4 years ago by Biomed4.7k • updated 7.1 years ago by Chris Miller21k
47
votes
7
answers
29k
views
23 follow
7
answers
How To Get Number Of Reads In Bam File Efficiently In Python?
python next-gen samtools sequencing written 10.4 years ago by User 9996810 • updated 2.2 years ago by Arindam Ghosh340
34
votes
6
answers
16k
views
23 follow
6
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 8.1 years ago by Abhi1.5k • updated 21 months ago by sabaghianamir7010
52
votes
5
answers
59k
views
23 follow
5
answers
from .BAM to .BAI using samtools
next-gen samtools sequencing written 6.2 years ago by Kizuna820 • updated 10 months ago by Waldeyr Mendes Cordeiro da Silva10
31
votes
2
answers
4.4k
views
23 follow
2
answers
66
votes
6
answers
58k
views
20 follow
6
answers
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