Showing: sequencingreset
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242
votes
11
answers
25k
views
166 follow
11
answers
240
votes
11
answers
138k
views
113 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 8.3 years ago by Biomed4.5k • updated 9 months ago by WouterDeCoster39k
231
votes
15
answers
62k
views
77 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 9.0 years ago by Biomed4.5k • updated 4.3 years ago by Barry40
97
votes
16
answers
32k
views
51 follow
16
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.0 years ago by KS360 • updated 5 months ago by Shixiang30
105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.0 years ago by Matthieu430 • updated 3.2 years ago by alexisdereeper30
81
votes
6
answers
46k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.9 years ago by krithika.gu250 • updated 10 months ago by Fred073060
158
votes
15
answers
40k
views
46 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 7.9 years ago by Panos1.7k • updated 4.7 years ago by bstrs0
39
votes
2
answers
14k
views
40 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 6.7 years ago by Istvan Albert ♦♦ 80k • updated 3.1 years ago by pengchy410
151
votes
0
answers
5.1k
views
37 follow
0
answers
Picking A Programming Language And Where To Begin
programming next-gen C subjective sequencing written 7.8 years ago by Travis2.8k • updated 7.3 years ago by Palani Kannan60
45
votes
6
answers
9.8k
views
37 follow
6
answers
58
votes
18
answers
20k
views
35 follow
18
answers
63
votes
8
answers
19k
views
31 follow
8
answers
96
votes
8
answers
25k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 5.6 years ago by Biostar ♦♦ 20
125
votes
6
answers
126k
views
29 follow
6
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 2.7 years ago by jokipokemon00010
55
votes
6
answers
37k
views
29 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.3 years ago by Ric140 • updated 7.3 years ago by Ketil3.9k
94
votes
15
answers
31k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.8 years ago by User 1586280 • updated 12 months ago by endrebak760
58
votes
8
answers
20k
views
27 follow
8
answers
93
votes
5
answers
46k
views
27 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.3 years ago by Pierre Lindenbaum120k • updated 2.1 years ago by martin.triska110
65
votes
8
answers
26k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.0 years ago by brentp23k • updated 3.7 years ago by Malachi Griffith17k
61
votes
7
answers
15k
views
25 follow
7
answers
179
votes
16
answers
13k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 8.6 years ago by Pierre Lindenbaum120k • updated 5.8 years ago by sarahhunter600
61
votes
6
answers
8.8k
views
25 follow
6
answers
21
votes
5
answers
5.8k
views
25 follow
5
answers
41
votes
3
answers
14k
views
24 follow
3
answers
The Difference Between Directional And Nondirectional Sequencing
non rna sequencing written 7.4 years ago by Assa Yeroslaviz1.2k • updated 10 months ago by julianasrinjuli0
47
votes
7
answers
27k
views
23 follow
7
answers
How To Get Number Of Reads In Bam File Efficiently In Python?
python next-gen samtools sequencing written 8.8 years ago by User 9996800 • updated 8 months ago by Arindam Ghosh160
31
votes
2
answers
3.4k
views
23 follow
2
answers
33
votes
6
answers
14k
views
21 follow
6
answers
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq clustering sequencing written 6.5 years ago by Abhi1.5k • updated 11 weeks ago by sabaghianamir700
54
votes
6
answers
46k
views
20 follow
6
answers
32
votes
2
answers
14k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 2.3 years ago by Friederike4.2k • updated 2.3 years ago by Charles Plessy2.7k
33
votes
6
answers
24k
views
18 follow
6
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 8.5 years ago by Stew1.4k • updated 5.1 years ago by Alex Reynolds28k
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