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- A: What does numbers 5 and 7 in P5 and P7 of illumina adapters signify ?
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Recent Replies
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C: Removing fastq duplicates by
C4 • 0
The library complexity of my ATAC-seq (not RNA-seq) is quite low, and since we sequenced quite de...
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C: Removing fastq duplicates by
_r_am ♦ 31k
Are you sure you should be removing biological duplicates (which I guess are reads duplicated bec...
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C: Removing fastq duplicates by
C4 • 0
"Technical duplicates arising from PCR artefacts, or biological duplicates which are natural col...
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aifiouap9q13 • 0
The problem has been resolved. It turns out that it works only when I use the index file downloa...
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C: Removing fastq duplicates by
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What are biological duplicates in FASTQ files?
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kk2 <- gseKEGG(geneList=geneList, keyType = "ENTREZID", ...
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C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by
dk0319 • 0
Got it to work for 1000 IDs, I am guessing its something to do with runtime
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C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by
genomax ♦ 92k
That may likely be the issue. Let us see if @vkkodali has any recommendations on that end.
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C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by
dk0319 • 0
I tried this all the lines look good, I don't know if its a length issue I am running 161323 line...
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rpolicastro • 2.3k
If you are using tidyverse you could also do `df %>% separate_rows(COG_CATEGORY, sep="\\|") %&...
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C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by
genomax ♦ 92k
I just tried the accessions @vkkodali posted in the original answer on a mac and did not have any...
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C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by
dk0319 • 0
I am using a Mac, I was able to get it to run using an input file but with only two id's. For som...
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