Showing: sequencingreset
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253
votes
11
answers
148k
views
119 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 8.9 years ago by Biomed4.6k • updated 16 months ago by WouterDeCoster42k
125
votes
7
answers
131k
views
30 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 9.7 years ago by Pierre Lindenbaum124k • updated 17 days ago by Renesh1.8k
109
votes
5
answers
115k
views
23 follow
5
answers
How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 9.4 years ago by Biomed4.6k • updated 6.1 years ago by Chris Miller21k
231
votes
15
answers
63k
views
77 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 9.5 years ago by Biomed4.6k • updated 4.8 years ago by Barry40
83
votes
6
answers
52k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 5.5 years ago by krithika.gu260 • updated 17 months ago by Fred073060
59
votes
6
answers
50k
views
20 follow
6
answers
95
votes
5
answers
48k
views
27 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.9 years ago by Pierre Lindenbaum124k • updated 2.7 years ago by martin.triska110
39
votes
4
answers
43k
views
16 follow
4
answers
from .BAM to .BAI using samtools
next-gen samtools sequencing written 5.2 years ago by Kizuna780 • updated 6 months ago by eidriangm0
160
votes
15
answers
42k
views
46 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 8.4 years ago by Panos1.7k • updated 5.3 years ago by bstrs0
105
votes
8
answers
40k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.6 years ago by Matthieu430 • updated 3.7 years ago by alexisdereeper30
57
votes
6
answers
39k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.9 years ago by Ric160 • updated 7.9 years ago by Ketil4.0k
29
votes
1
answer
39k
views
9 follow
1
answer
What Is The Difference Between Sequencing Depth And Coverage
read coverage sequencing written 8.7 years ago by User 6659970 • updated 8.7 years ago by Dr. Mabuse47k
25
votes
8
answers
38k
views
14 follow
8
answers
52
votes
6
answers
36k
views
15 follow
6
answers
Converting Bam To Fastq
next-gen fastq format tool sequencing written 9.7 years ago by Zach Stednick650 • updated 2.9 years ago by Biostar ♦♦ 20
37
votes
2
answers
34k
views
6 follow
2
answers
What Is Snp Calling?
next-gen snp sequencing written 9.6 years ago by Giovanni M Dall'Olio26k • updated 8.9 years ago by Joesoap0
29
votes
1
answer
34k
views
9 follow
1
answer
Meaning Of Fpkm Value Used By Cufflinks
tophat next-gen cuffdiff sequencing cufflinks gene written 8.3 years ago by Oliver230 • updated 8.3 years ago by Karl330
16
votes
2
answers
33k
views
8 follow
2
answers
What'S The Meaning Of "Bridge Pcr" In The Next Generation Sequencing
pcr sequencing written 6.4 years ago by weiqiangduan130 • updated 6.4 years ago by William4.5k
98
votes
17
answers
33k
views
51 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.5 years ago by KS360 • updated 11 months ago by Shixiang40
43
votes
2
answers
33k
views
10 follow
2
answers
94
votes
15
answers
32k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.3 years ago by User 1586280 • updated 18 months ago by endrebak800
70
votes
5
answers
31k
views
17 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 9.6 years ago by Pierre Lindenbaum124k • updated 8.7 years ago by Ketil4.0k
250
votes
11
answers
28k
views
174 follow
11
answers
47
votes
7
answers
28k
views
23 follow
7
answers
How To Get Number Of Reads In Bam File Efficiently In Python?
python next-gen samtools sequencing written 9.4 years ago by User 9996800 • updated 14 months ago by Arindam Ghosh200
65
votes
8
answers
27k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.6 years ago by brentp23k • updated 4.3 years ago by Malachi Griffith18k
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 9.7 years ago by Pierre Lindenbaum124k • updated 6.1 years ago by Biostar ♦♦ 20
33
votes
6
answers
25k
views
18 follow
6
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 9.1 years ago by Stew1.4k • updated 5.6 years ago by Alex Reynolds29k
38
votes
5
answers
24k
views
17 follow
5
answers
Human Exome Capture Library Coordinates Download
exome agilent next-gen sequencing written 8.9 years ago by Biomed4.6k • updated 6.5 years ago by John St. John1.1k
51
votes
6
answers
24k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 9.1 years ago by Bio_X2Y3.7k • updated 3.7 years ago by Biostar ♦♦ 20
49
votes
1
answer
23k
views
1
answer
Paired-end reads - what is what?
paired-end rna-seq sequencing written 4.5 years ago by darxsys190 • updated 4.5 years ago by thackl2.7k
2
votes
1
answer
22k
views
1
answer
how to install samtools
next-gen sequencing written 3.9 years ago by Chenglin120
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