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270
votes
11
answers
33k
views
192 follow
11
answers
279
votes
11
answers
165k
views
126 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 9.9 years ago by Biomed4.7k • updated 2.3 years ago by WouterDeCoster44k
232
votes
15
answers
65k
views
78 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 10.5 years ago by Biomed4.7k • updated 5.8 years ago by Barry40
109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.6 years ago by Matthieu460 • updated 4.7 years ago by alexisdereeper30
179
votes
16
answers
14k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 10.1 years ago by Pierre Lindenbaum131k • updated 7.4 years ago by sarahhunter600
98
votes
5
answers
52k
views
28 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 9.8 years ago by Pierre Lindenbaum131k • updated 3.7 years ago by martin.triska130
42
votes
2
answers
16k
views
42 follow
2
answers
Tutorial: Sequencing Technology Review Papers
tutorial papers sequencing written 8.3 years ago by Istvan Albert ♦♦ 86k • updated 4.6 years ago by pengchy430
132
votes
7
answers
141k
views
32 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 12 months ago by Renesh1.9k
161
votes
15
answers
46k
views
47 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 9.4 years ago by Panos1.7k • updated 6.2 years ago by bstrs0
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 7.1 years ago by Biostar ♦♦ 20
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.3 years ago by User 1586280 • updated 2.5 years ago by endrebak840
66
votes
8
answers
28k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.6 years ago by brentp23k • updated 5.3 years ago by Malachi Griffith18k
61
votes
6
answers
9.3k
views
25 follow
6
answers
57
votes
4
answers
4.1k
views
9 follow
4
answers
110
votes
5
answers
125k
views
23 follow
5
answers
How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 10.4 years ago by Biomed4.7k • updated 7.1 years ago by Chris Miller21k
37
votes
2
answers
3.3k
views
10 follow
2
answers
51
votes
6
answers
24k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 10.1 years ago by Bio_X2Y3.9k • updated 4.7 years ago by Biostar ♦♦ 20
60
votes
18
answers
22k
views
37 follow
18
answers
90
votes
7
answers
60k
views
58 follow
7
answers
62
votes
7
answers
17k
views
26 follow
7
answers
45
votes
5
answers
6.4k
views
7 follow
5
answers
46
votes
4
answers
9.3k
views
10 follow
4
answers
How To Produce Simulated 'Synthetic' Sequences
model simulation next-gen sequencing written 10.5 years ago by Stefano Berri4.1k • updated 10.5 years ago by Jonathan Manning640
31
votes
2
answers
4.4k
views
23 follow
2
answers
51
votes
3
answers
3.8k
views
7 follow
3
answers
What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 10.0 years ago by Jeremy Leipzig19k • updated 21 months ago by Biostar ♦♦ 20
48
votes
6
answers
12k
views
39 follow
6
answers
34
votes
2
answers
17k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 3.9 years ago by Friederike6.5k • updated 3.9 years ago by Charles Plessy2.7k
72
votes
5
answers
32k
views
18 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 10.6 years ago by Pierre Lindenbaum131k • updated 9.6 years ago by Ketil4.0k
60
votes
6
answers
6.9k
views
17 follow
6
answers
Figure Of Diminishing Sequencing Costs
sequencing next-gen cost written 10.1 years ago by Eric Normandeau10k • updated 5.9 years ago by Obi Griffith18k
63
votes
8
answers
20k
views
31 follow
8
answers
57
votes
6
answers
43k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 8.9 years ago by Ric160 • updated 8.9 years ago by Ketil4.0k
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